Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018257

Physical Location & Seq

Genomic Coordinates Reverse (-)

56537204 .. 56541655

Gene Structure 4452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0409600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4080 bp

ATGGTGCCGCCGGCCGGCTTCAGGAGGTGTCTAGTCCACCTTGGTATTGTGAACAGAAGAACCAGGCATGCTCTTAAGCTGCTTATACAAAAACATCGCATAAGTCTTGTCTTCCTCAGCGAGACTCACTGTACAAAGGACCAGCATCAATCCCTTCGCCGTTTTGTTGGTCTGCCTCATATTGCTCACTTCGATCGTGTGGAGCGATCGGGGGGCCTTGCTTTGCTTTGGGATGATTCTATCTCGGTTAGGGTTCAAGATGTGGAGAGGTATTATATTGATGCTTTCGTTAAAGCTCCTAACGAGGTGGAATGGAGGTTTACTGGATTTTATGGTCATCCCGAAACCGGCCAACGTCATCTGTCCTGGGATTTATTACGATCTCTGGTCCGGAACTCGGGAGAGAGATGGGTAGTTGCCGGGGATTTCAATGAGATTATGGAGTTGGGTGAGAAGTCTGGTGGCAGACTGCGTAGTCAGAGTCAGATGCAGGCTTTTCGACAAGCTCTTTCAGATTGTAACCTCAAGGATATGGGGGCTGCTGGAGGTCTGTTTACGTGGTGTGATTCCAATACGAAAGAGAGGTTAGATAGAGGTACTTGTTCACCGGCCTGGATATCGGAATTTAGTTTTTCTCGTGTGATCAATCTTCATCCTAGTCGGTCGGACCACACTCCTCTCCTGTTGGAGGTCCGAAAGGAGCAGTTGAGATTTGAGAAGTTTCGACGCCAGTTCCGTTTTGAAGAGATGTGGTGTGCCCATGAAGGTTTCTCAGCCAAAGTGGAGGAGGCTTGGGGAATTCCATATGGTGGGGAGCCTATGCTTCAGCTGTGCCGCAAAGTAAAGGGATTGGGGACTCATCTTTTGGAGTGGGATCGAACTATTTTCCGTAGTAGAAGAGAGGAAGTGGAAGGGGTACGGGCACAACAAGATGCTCTTCTCCAGAAACCGTTCGACCAAAGTGATCATGCCCTCAAGCTGCAACTTTCGCAAAGATTGAATGAGTTGATGTCCATTGATGAGACGTATTGGAGGCAACGGTCTAGAGCGGTTTGGCTTAGGGATGGTGACCGGAACTCTCGTTTCTTTCATAAGAAAGCATCGAACAGACGGCAAAAAAACAAAATTAAAGGCCTTTTCGATATCAATGGAGTATGGCAAGAGTCCACGGCCGGTATAGATGGGGTTGTGTTGGATTACTTTCAGCATATTTTCAGCTCCCAACCACAGGACTTGGAGGCTCAAAACTTGGTTCTTCAGACTATTGAGCCTCGTGTCTCAGCAGACATGAATGCCATCTTATTGGCTCCCTACAGCTTGGAGGAAGTTCGTATAGCGTTATTTCAGATGCATCCTTCGAAAGCGCCAGGATTGGATGGTCTCTCACCTTTCTTTTTTCAGAAATACTGGGACTTAGTTGGGCAGGAGGTCAGTAATGCGGTGATTTCAATGTTAACTCATTCTGAAATTCCCCCTGATTTGAATTTCACCTATGTCGCCCTCATTCCAAAGATTAAAGAAGTTGTGAATATGTCCCATCTTCGGCCTATTGCGTTATGCAATGTGATTTATAAAATTTCTTCAAAAGTTATTGCTAACCGACTGAAAAGTTTCTTGTCAGATATTATTTCTCCTCAACAGAGTGTGTTTGTTCCAAATCGGCTTATTTCTGATAATACTTTGGTAGCGTCAGAGCTAGCCCATTACATGCACAGGTTGAGGCGTGGACACGAAGGTTTTTTGGCTCTTAAATTGGATATCAGTAAAGCATACGATAGACTGGAATGGGGTTTCTTACAGAGAATCATGTTGAAAATGGGGTTTGCGGAGGAATGGGTGGACCTGATTATGTCTTGCCTTTCTACGGTGCGTTATTCCTTCCTTGTTAATGGTACACCTAGGGGTTATGTGACACCGCAGCGTGGGTTGCGACAAGGCGACCCATTGTCCCCCTACTTGTTTTTATTATGTGCAGAGGGCCTGTCCGCTCTTATTTCCCACGGAGTTTCTAGTGGCCAATGGCAGGGGCTGCGTATTTGTGATGGTGCCCCTACTATCAGTCATCTTTTGTTTGCAGACGATAGTATGCTTTATTCTATTGCTATGCCTCAGGATTGCACCATGATTAGGGATTTGCTAAATATTTATGAAAGGGCCTCTGGGCAACAGGTGAACCTACAGAAGAGTAGTGTTGTTTTGAGTGGGAGTGTTTTACCGCCTTTGAGAGACAATATGGCTCAAATCCTGGGGGTTCAGATGGTGGAGAAGCATGATAAGTATTTGGGGATTCCGACCCTTATTGGTAGATCCAAGTCAGAAACTTTTGCTTATATTAAAGATAACCTGTCAAAAAAATTGACAGGTTGGAGATCCAAATTGCTTAGTGCTGCCGGTAGAGAAATCTTAATCAAGGTGGTGGCTCAGGCTCTACCACTGTATACCATGAATTGCTACCTACTCCCTCAGAATCTTATTCAGGAACTCCACCAGCTTTGTCCACAGTTTTGGTGGGGTAGTACGGACGACAAGAAAGCTATGCATTGGCAGGCTTGGGATGACCTCTGTAAACCCAAAAGTATGGGAGGTATGGGTTTCCGACATCTTTTTGCTTTTAACTTGGCTATGTTAGCCAAGCAAGGGTGGCGGTTACTCCAATATCCTGACTCCCTGATCGGTCAACTTTTTAAAGCTCTATACTTCCCCCACAGTAATTTTTGGGAAGCTGAGCTAGGTTCCCAGCCATCTTTTGCATGGCGAAGTATCTTGCAAGGCCGAGACATACTTAAAGCGGGCATTAAACGTCACATTGGGAATGGTTTGTCTACCAATATATGGCGGGATCCGTGGTTGATGGGTGAGGATTTGGGTGCTTACTTCTCGAGTCGAGCAACTTTCGTTGCTGATCTTTTCATCTCTCCAGGTGTGTGGAATGTTACTCTTTTATCTGAACTTTTTCCTGCTTATATTGTTCAGAAGATCCTCACTCTTCCTCTTAGTCCTCGGGTTCATGAGGATAGATGGATTTGGGGTGCAGATAAAAAAGGCCAGTTCACGGTAAAGTCGGCCTACCATGTAGCTAGGAATAGGATTCTTGATGATGTTTCATCCATACCGAATCCAAGTGCTACTCTTTGGCGTCAGCTGTGGAAAGCTCAGGTTCCAAGCAATGTGAAGATATGTGCTTGGAAAGCAGCCTCTAACATTCTTCCTACTCGGGGTCGGCTTAGTGAACGTGGTGTTGATATAGACACCCAATGCCCACTTTGTGACGAAGAAGTTGAAACTCCTCTCCATGCAACTCGTGACTGTCCCCATGCTACTAGTTTGATTCATGGTGCCAATATTTCCCTTGTTTCGGCCCCTTCCACTGTAGCAGATTGGCTCACAGTTGTTTCAGCGACATATCCTCATCATTTTGCCTCTTCGTTGATGATTTTGTGGGCTACTTGGAGGAATAGAAATGCTAAAGTTTGGGGAGGTGATTTTAAGCAGGCCTCCGAGATTGTCCCAATGTCATTGGGTTGGTTGGCAGAATTTAAAGCAGCTCGCATTACTACCCGGTTGGGGTTGGCAACTCGTCCAGTACCCAAATGGTCGAAACCACCAGTTGGCTTTGTGAAGTTGAATGTTGACGCTGCTTTTGATCATACCTCGTGTCGTACGGGTTTAGGTGGGGTGTTCCGAGATCATGTAGGGACTTTTCTTCATGGGTTTCGACATTCTGTTGCAATTGCTCAATCAGCTAGACATGCCGAGCTATTAGCATTGATATTGGGAGTGCAGTTGGCCATTGACCATCATCTTACACCTTTGATTGTGGAGTCGGACTGCCTGGACTTGGTGTCAGCATTGTCCTCATCTTCATTGGATTGTTCGGAGCTGGGTTTTTTGCTGGTAGACCTGCGAACTTTGTTACATGAAGCATTGGATGCTCGTGTGCTTAAGGTAGCTAGGCAGGCCAATAGTGTGGCCCATATTTTGGCGCAGGAGGCCAAGCATGATGATTTTCAGATAGATTATTTCTCAGATATTCCTCCGTCTATGGAGGCTAGTTTAATCAATGATTGTAATGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

1359

Amino Acids

153.97

Weight (kDa)

8.79

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	21 - 198	1.6e-10	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	506 - 762	1e-25	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1017 - 1108	2.4e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	1209 - 1331	1.2e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018257)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012900
rosa_rugosa	Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha	Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana	Rw3G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1572
AasI	GACNNNNNNGTC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	3909
AccB1I	GGYRCC	3 cut(s)	4, 2045, 3335
AccB7I	CCANNNNNTGG	4 cut(s)	809, 2832, 3608, 3979
AccBSI	CCGCTC	2 cut(s)	1049, 1988
AccI	GTMKAC	3 cut(s)	2438, 2822, 3897
AccIII	TCCGGA	1 cut(s)	390
AclWI	GGATC	6 cut(s)	882, 2301, 2364, 2834, 2847, 2971
AcoI	YGGCCR	5 cut(s)	12, 349, 1170, 2014, 3786
AcsI	RAATTY	6 cut(s)	623, 798, 1467, 1483, 1575, 3533
AcuI	CTGAAG	3 cut(s)	4, 809, 1241
AcyI	GRCGYC	2 cut(s)	727, 3136
AdeI	CACNNNGTG	1 cut(s)	3266
AfaI	GTAC	7 cut(s)	133, 598, 918, 1894, 2518, 3585, 3661
AflII	CTTAAG	2 cut(s)	74, 3941
AhdI	GACNNNNNGTC	2 cut(s)	1945, 3841
AhlI	ACTAGT	1 cut(s)	3320
AjnI	CCWGG	7 cut(s)	62, 365, 611, 1366, 2244, 2917, 3831
Alw26I	GTCTC	6 cut(s)	116, 1016, 1282, 1385, 2220, 2769
AlwI	GGATC	6 cut(s)	882, 2301, 2364, 2834, 2847, 2971
AlwNI	CAGNNNCTG	1 cut(s)	2029
Ama87I	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
Aor13HI	TCCGGA	1 cut(s)	390
ApeKI	GCWGC	9 cut(s)	79, 539, 979, 1918, 2029, 2387, 3191, 3542, 3635
ApoI	RAATTY	6 cut(s)	623, 798, 1467, 1483, 1575, 3533
ArsI	GACNNNNNNTTYG	4 cut(s)	847, 879, 3623, 3655
Asp700I	GAANNNNTTC	3 cut(s)	950, 1610, 2952
AspA2I	CCTAGG	1 cut(s)	1898
AspLEI	GCGC	2 cut(s)	1366, 3985
AsuC2I	CCSGG	2 cut(s)	421, 3559
AsuHPI	GGTGA	9 cut(s)	461, 597, 1079, 1377, 1453, 1480, 2182, 2867, 3491
AsuII	TTCGAA	1 cut(s)	1358
AsuNHI	GCTAGC	1 cut(s)	1696
AvaI	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
AvaII	GGWCC	5 cut(s)	139, 388, 667, 691, 1840
AvrII	CCTAGG	1 cut(s)	1898
AxyI	CCTNAGG	1 cut(s)	2109
BaeGI	GKGCMC	3 cut(s)	760, 925, 2050
BalI	TGGCCA	2 cut(s)	2016, 3788
BamHI	GGATCC	1 cut(s)	2839
BanI	GGYRCC	3 cut(s)	4, 2045, 3335
BauI	CACGAG	5 cut(s)	636, 1272, 3300, 3652, 3933
BbsI	GAAGAC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	9 cut(s)	66, 526, 966, 1930, 2016, 2374, 3203, 3554, 3622
BceAI	ACGGC	3 cut(s)	144, 1127, 1185
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	7 cut(s)	64, 367, 613, 1368, 2246, 2919, 3833
BclI	TGATCA	3 cut(s)	642, 964, 3643
BcnI	CCSGG	2 cut(s)	421, 3559
BcoDI	GTCTC	6 cut(s)	116, 1016, 1282, 1385, 2220, 2769
BcuI	ACTAGT	1 cut(s)	3320
BfmI	CTRYAG	3 cut(s)	1312, 2177, 3369
BfoI	RGCGCY	1 cut(s)	1367
BfrI	CTTAAG	2 cut(s)	74, 3941
BfuAI	ACCTGC	1 cut(s)	3909
BlnI	CCTAGG	1 cut(s)	1898
BlpI	GCTNAGC	1 cut(s)	2724
Bme1390I	CCNGG	9 cut(s)	64, 367, 421, 613, 1368, 2246, 2919, 3559, 3833
Bme18I	GGWCC	5 cut(s)	139, 388, 667, 691, 1840
BmeRI	GACNNNNNGTC	2 cut(s)	1945, 3841
BmeT110I	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
BmrFI	CCNGG	9 cut(s)	64, 367, 421, 613, 1368, 2246, 2919, 3559, 3833
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	9 cut(s)	154, 271, 477, 922, 1109, 1338, 1360, 3919, 4063
BmtI	GCTAGC	1 cut(s)	1700
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	3 cut(s)	564, 926, 2901
Bpu10I	CCTNAGC	4 cut(s)	116, 1058, 2421, 3153
Bpu1102I	GCTNAGC	1 cut(s)	2724
Bpu14I	TTCGAA	1 cut(s)	1358
BpuEI	CTTGAG	2 cut(s)	509, 959
BpuMI	CCSGG	2 cut(s)	421, 3559
BsaAI	YACGTR	1 cut(s)	558
BsaHI	GRCGYC	2 cut(s)	727, 3136
BsaI	GGTCTC	1 cut(s)	1385
BsaJI	CCNNGG	9 cut(s)	40, 366, 420, 1167, 1898, 1999, 2245, 2843, 2999
BsaWI	WCCGGW	2 cut(s)	390, 1071
Bse118I	RCCGGY	6 cut(s)	10, 14, 347, 607, 1172, 2390
Bse1I	ACTGG	7 cut(s)	328, 730, 1412, 1785, 3046, 3581, 3605
Bse21I	CCTNAGG	1 cut(s)	2109
Bse3DI	GCAATG	2 cut(s)	1567, 3172
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	7 cut(s)	64, 367, 613, 1368, 2246, 2919, 3833
BseDI	CCNNGG	9 cut(s)	40, 366, 420, 1167, 1898, 1999, 2245, 2843, 2999
BseGI	GGATG	9 cut(s)	238, 337, 652, 1069, 1351, 1381, 2560, 3104, 3934
BseMI	GCAATG	2 cut(s)	1567, 3172
BseMII	CTCAG	9 cut(s)	130, 786, 1293, 2123, 2435, 2477, 2715, 3167, 4038
BseNI	ACTGG	7 cut(s)	328, 730, 1412, 1785, 3046, 3581, 3605
BseRI	GAGGAG	4 cut(s)	666, 800, 1623, 3276
BseSI	GKGCMC	3 cut(s)	760, 925, 2050
BseX3I	CGGCCG	2 cut(s)	12, 1170
BseXI	GCAGC	9 cut(s)	66, 526, 966, 1930, 2016, 2374, 3203, 3554, 3622
BseYI	CCCAGC	2 cut(s)	2736, 3880
BsgI	GTGCAG	3 cut(s)	1992, 3051, 3800
Bsh1285I	CGRYCG	5 cut(s)	15, 196, 209, 665, 1173
BshNI	GGYRCC	3 cut(s)	4, 2045, 3335
BsiEI	CGRYCG	5 cut(s)	15, 196, 209, 665, 1173
BsiHKCI	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
BsiWI	CGTACG	1 cut(s)	3659
BslFI	GGGAC	7 cut(s)	868, 1424, 1519, 1933, 3294, 3491, 3709
BsmAI	GTCTC	6 cut(s)	116, 1016, 1282, 1385, 2220, 2769
BsmBI	CGTCTC	1 cut(s)	1016
BsmFI	GGGAC	7 cut(s)	868, 1424, 1519, 1933, 3294, 3491, 3709
BsmI	GAATGC	1 cut(s)	1297
Bso31I	GGTCTC	1 cut(s)	1385
BsoBI	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
Bsp119I	TTCGAA	1 cut(s)	1358
Bsp1286I	GDGCHC	3 cut(s)	760, 925, 2050
Bsp13I	TCCGGA	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	131
Bsp1720I	GCTNAGC	1 cut(s)	2724
BspCNI	CTCAG	9 cut(s)	129, 785, 1292, 2122, 2434, 2476, 2716, 3166, 4037
BspEI	TCCGGA	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	3007
BspMI	ACCTGC	1 cut(s)	3909
BspOI	GCTAGC	1 cut(s)	1700
BspPI	GGATC	6 cut(s)	882, 2301, 2364, 2834, 2847, 2971
BspQI	GCTCTTC	1 cut(s)	942
BspT104I	TTCGAA	1 cut(s)	1358
BspT107I	GGYRCC	3 cut(s)	4, 2045, 3335
BspTI	CTTAAG	2 cut(s)	74, 3941
BspTNI	GGTCTC	1 cut(s)	1385
BsrBI	CCGCTC	2 cut(s)	1049, 1988
BsrDI	GCAATG	2 cut(s)	1567, 3172
BsrFI	RCCGGY	6 cut(s)	10, 14, 347, 607, 1172, 2390
BsrGI	TGTACA	1 cut(s)	131
BsrI	ACTGG	7 cut(s)	328, 730, 1412, 1785, 3046, 3581, 3605
BssAI	RCCGGY	6 cut(s)	10, 14, 347, 607, 1172, 2390
BssECI	CCNNGG	9 cut(s)	40, 366, 420, 1167, 1898, 1999, 2245, 2843, 2999
BssNAI	GTATAC	1 cut(s)	2439
BssNI	GRCGYC	2 cut(s)	727, 3136
BssSI	CACGAG	5 cut(s)	636, 1272, 3300, 3652, 3933
BssT1I	CCWWGG	2 cut(s)	40, 1898
Bst1107I	GTATAC	1 cut(s)	2439
Bst2BI	CACGAG	5 cut(s)	636, 1272, 3300, 3652, 3933
Bst2UI	CCWGG	7 cut(s)	64, 367, 613, 1368, 2246, 2919, 3833
Bst6I	CTCTTC	6 cut(s)	738, 892, 942, 2177, 2991, 3427
BstACI	GRCGYC	2 cut(s)	727, 3136
BstAFI	CTTAAG	2 cut(s)	74, 3941
BstAPI	GCANNNNNTGC	2 cut(s)	2029, 3929
BstAUI	TGTACA	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	1358
BstDSI	CCRYGG	3 cut(s)	1167, 1999, 2843
BstEII	GGTNACC	1 cut(s)	1067
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	9 cut(s)	238, 337, 652, 1069, 1351, 1381, 2560, 3104, 3934
BstH2I	RGCGCY	1 cut(s)	1367
BstHHI	GCGC	2 cut(s)	1366, 3985
BstMAI	GTCTC	6 cut(s)	116, 1016, 1282, 1385, 2220, 2769
BstMCI	CGRYCG	5 cut(s)	15, 196, 209, 665, 1173
BstNI	CCWGG	7 cut(s)	64, 367, 613, 1368, 2246, 2919, 3833
BstNSI	RCATGY	3 cut(s)	71, 1711, 3752
BstPI	GGTNACC	1 cut(s)	1067
BstSCI	CCNGG	9 cut(s)	62, 365, 419, 611, 1366, 2244, 2917, 3557, 3831
BstSFI	CTRYAG	3 cut(s)	1312, 2177, 3369
BstSLI	GKGCMC	3 cut(s)	760, 925, 2050
BstV1I	GCAGC	9 cut(s)	66, 526, 966, 1930, 2016, 2374, 3203, 3554, 3622
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	4 cut(s)	2306, 2369, 2839, 2976
BstXI	CCANNNNNNTGG	5 cut(s)	1303, 2505, 2578, 2925, 3967
BstYI	RGATCY	4 cut(s)	2306, 2369, 2839, 2976
BstZ17I	GTATAC	1 cut(s)	2439
BstZI	CGGCCG	2 cut(s)	12, 1170
Bsu36I	CCTNAGG	1 cut(s)	2109
BtgI	CCRYGG	3 cut(s)	1167, 1999, 2843
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	9 cut(s)	238, 337, 652, 1069, 1351, 1381, 2560, 3104, 3934
BtsIMutI	CAGTG	3 cut(s)	127, 2432, 3366
BveI	ACCTGC	1 cut(s)	3909
CaiI	CAGNNNCTG	1 cut(s)	2029
CciI	TCATGA	1 cut(s)	3007
CfoI	GCGC	2 cut(s)	1366, 3985
Cfr10I	RCCGGY	6 cut(s)	10, 14, 347, 607, 1172, 2390
CseI	GACGC	4 cut(s)	735, 1677, 3125, 3641
Csp6I	GTAC	7 cut(s)	132, 597, 917, 1893, 2517, 3584, 3660
CspCI	CAANNNNNGTGG	4 cut(s)	1215, 1250, 2474, 2509
CviQI	GTAC	7 cut(s)	132, 597, 917, 1893, 2517, 3584, 3660
DraI	TTTAAA	2 cut(s)	2686, 3538
DraIII	CACNNNGTG	1 cut(s)	3266
DrdI	GACNNNNNNGTC	1 cut(s)	474
DriI	GACNNNNNGTC	2 cut(s)	1945, 3841
DseDI	GACNNNNNNGTC	1 cut(s)	474
EaeI	YGGCCR	5 cut(s)	12, 349, 1170, 2014, 3786
EagI	CGGCCG	2 cut(s)	12, 1170
Eam1104I	CTCTTC	6 cut(s)	738, 892, 942, 2177, 2991, 3427
Eam1105I	GACNNNNNGTC	2 cut(s)	1945, 3841
EarI	CTCTTC	6 cut(s)	738, 892, 942, 2177, 2991, 3427
EclXI	CGGCCG	2 cut(s)	12, 1170
Eco130I	CCWWGG	2 cut(s)	40, 1898
Eco147I	AGGCCT	2 cut(s)	1134, 3494
Eco31I	GGTCTC	1 cut(s)	1385
Eco32I	GATATC	3 cut(s)	618, 1144, 1759
Eco47I	GGWCC	5 cut(s)	139, 388, 667, 691, 1840
Eco52I	CGGCCG	2 cut(s)	12, 1170
Eco57I	CTGAAG	3 cut(s)	4, 809, 1241
Eco81I	CCTNAGG	1 cut(s)	2109
Eco88I	CYCGRG	4 cut(s)	397, 2878, 3000, 3213
Eco91I	GGTNACC	1 cut(s)	1067
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoO109I	RGGNCCY	3 cut(s)	214, 1978, 2154
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRI	GAATTC	1 cut(s)	798
EcoRII	CCWGG	7 cut(s)	62, 365, 611, 1366, 2244, 2917, 3831
EcoRV	GATATC	3 cut(s)	618, 1144, 1759
EcoT14I	CCWWGG	2 cut(s)	40, 1898
EcoT22I	ATGCAT	2 cut(s)	1353, 2541
ErhI	CCWWGG	2 cut(s)	40, 1898
Esp3I	CGTCTC	1 cut(s)	1016
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FaqI	GGGAC	7 cut(s)	868, 1424, 1519, 1933, 3294, 3491, 3709
FauI	CCCGC	2 cut(s)	2782, 2829
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	3 cut(s)	642, 964, 3643
FblI	GTMKAC	3 cut(s)	2438, 2822, 3897
FokI	GGATG	9 cut(s)	245, 324, 639, 1076, 1338, 1388, 2567, 3091, 3941
GlaI	GCGC	2 cut(s)	1365, 3984
GsaI	CCCAGC	2 cut(s)	2740, 3884
GsuI	CTGGAG	3 cut(s)	564, 926, 2901
HaeII	RGCGCY	1 cut(s)	1367
HgaI	GACGC	4 cut(s)	735, 1677, 3125, 3641
HhaI	GCGC	2 cut(s)	1366, 3985
Hin1I	GRCGYC	2 cut(s)	727, 3136
Hin6I	GCGC	2 cut(s)	1364, 3983
HinP1I	GCGC	2 cut(s)	1364, 3983
HincII	GTYRAC	3 cut(s)	1455, 2678, 3631
HindII	GTYRAC	3 cut(s)	1455, 2678, 3631
HpaI	GTTAAC	1 cut(s)	1455
HphI	GGTGA	9 cut(s)	461, 597, 1079, 1377, 1453, 1480, 2182, 2867, 3491
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	7 cut(s)	164, 758, 905, 1365, 1727, 1888, 3372
HpyCH4IV	ACGT	5 cut(s)	355, 557, 1025, 2800, 3232
HpySE526I	ACGT	5 cut(s)	355, 557, 1025, 2800, 3232
Hsp92I	GRCGYC	2 cut(s)	727, 3136
HspAI	GCGC	2 cut(s)	1364, 3983
Kpn2I	TCCGGA	1 cut(s)	390
KroI	GCCGGC	2 cut(s)	10, 14
KroNI	GCCGGC	2 cut(s)	12, 16
Ksp22I	TGATCA	3 cut(s)	642, 964, 3643
KspAI	GTTAAC	1 cut(s)	1455
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	7 cut(s)	202, 301, 700, 814, 1223, 1312, 3877
Lsp1109I	GCAGC	9 cut(s)	66, 526, 966, 1930, 2016, 2374, 3203, 3554, 3622
LweI	GCATC	9 cut(s)	154, 271, 477, 922, 1109, 1338, 1360, 3919, 4063
MaeII	ACGT	5 cut(s)	355, 557, 1025, 2800, 3232
MaeIII	GTNAC	9 cut(s)	518, 1067, 1909, 2646, 2801, 2932, 3266, 3302, 3912
MbiI	CCGCTC	2 cut(s)	1049, 1988
MfeI	CAATTG	1 cut(s)	3729
MflI	RGATCY	4 cut(s)	2306, 2369, 2839, 2976
MhlI	GDGCHC	3 cut(s)	760, 925, 2050
MlsI	TGGCCA	2 cut(s)	2016, 3788
MluNI	TGGCCA	2 cut(s)	2016, 3788
MlyI	GAGTC	7 cut(s)	118, 490, 850, 1172, 2657, 2890, 3830
MmeI	TCCRAC	7 cut(s)	645, 666, 1173, 2315, 2345, 2620, 3804
Mox20I	TGGCCA	2 cut(s)	2016, 3788
Mph1103I	ATGCAT	2 cut(s)	1353, 2541
MroI	TCCGGA	1 cut(s)	390
MroNI	GCCGGC	2 cut(s)	10, 14
MroXI	GAANNNNTTC	3 cut(s)	950, 1610, 2952
MscI	TGGCCA	2 cut(s)	2016, 3788
Msp20I	TGGCCA	2 cut(s)	2016, 3788
MspA1I	CMGCKG	2 cut(s)	829, 3142
MspCI	CTTAAG	2 cut(s)	74, 3941
MspR9I	CCNGG	9 cut(s)	64, 367, 421, 613, 1368, 2246, 2919, 3559, 3833
MunI	CAATTG	1 cut(s)	3729
Mva1269I	GAATGC	1 cut(s)	1297
MvaI	CCWGG	7 cut(s)	64, 367, 613, 1368, 2246, 2919, 3833
NaeI	GCCGGC	2 cut(s)	12, 16
NciI	CCSGG	2 cut(s)	421, 3559
NdeI	CATATG	1 cut(s)	805
NgoMIV	GCCGGC	2 cut(s)	10, 14
NheI	GCTAGC	1 cut(s)	1696
NmeAIII	GCCGAG	2 cut(s)	2798, 3778
NmuCI	GTSAC	5 cut(s)	1067, 1909, 2801, 3266, 3302
NsiI	ATGCAT	2 cut(s)	1353, 2541
NspI	RCATGY	3 cut(s)	71, 1711, 3752
NspV	TTCGAA	1 cut(s)	1358
PaeI	GCATGC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	2878
PagI	TCATGA	1 cut(s)	3007
PceI	AGGCCT	2 cut(s)	1134, 3494
PciSI	GCTCTTC	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	2 cut(s)	202, 733
PctI	GAATGC	1 cut(s)	1297
PdiI	GCCGGC	2 cut(s)	12, 16
PdmI	GAANNNNTTC	3 cut(s)	950, 1610, 2952
PfeI	GAWTC	8 cut(s)	236, 566, 1803, 2287, 2467, 3088, 3115, 3328
Pfl23II	CGTACG	1 cut(s)	3659
PflMI	CCANNNNNTGG	4 cut(s)	809, 2832, 3608, 3979
Ple19I	CGATCG	2 cut(s)	196, 209
PleI	GAGTC	7 cut(s)	118, 489, 850, 1171, 2657, 2889, 3829
PpsI	GAGTC	7 cut(s)	118, 489, 850, 1171, 2657, 2889, 3829
Ppu21I	YACGTR	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	1572
Psp6I	CCWGG	7 cut(s)	62, 365, 611, 1366, 2244, 2917, 3831
PspEI	GGTNACC	1 cut(s)	1067
PspFI	CCCAGC	2 cut(s)	2736, 3880
PspGI	CCWGG	7 cut(s)	62, 365, 611, 1366, 2244, 2917, 3831
PspLI	CGTACG	1 cut(s)	3659
PstNI	CAGNNNCTG	1 cut(s)	2029
PsuI	RGATCY	4 cut(s)	2306, 2369, 2839, 2976
PvuI	CGATCG	2 cut(s)	196, 209
PvuII	CAGCTG	2 cut(s)	829, 3142
RsaI	GTAC	7 cut(s)	133, 598, 918, 1894, 2518, 3585, 3661
RsaNI	GTAC	7 cut(s)	132, 597, 917, 1893, 2517, 3584, 3660
SapI	GCTCTTC	1 cut(s)	942
SchI	GAGTC	7 cut(s)	118, 490, 850, 1172, 2657, 2890, 3830
ScrFI	CCNGG	9 cut(s)	64, 367, 421, 613, 1368, 2246, 2919, 3559, 3833
SduI	GDGCHC	3 cut(s)	760, 925, 2050
SfaNI	GCATC	9 cut(s)	154, 271, 477, 922, 1109, 1338, 1360, 3919, 4063
SfcI	CTRYAG	3 cut(s)	1312, 2177, 3369
Sfr274I	CTCGAG	1 cut(s)	2878
SfuI	TTCGAA	1 cut(s)	1358
SinI	GGWCC	5 cut(s)	139, 388, 667, 691, 1840
SlaI	CTCGAG	1 cut(s)	2878
SmlI	CTYRAG	5 cut(s)	74, 524, 974, 2878, 3941
SmoI	CTYRAG	5 cut(s)	74, 524, 974, 2878, 3941
SpeI	ACTAGT	1 cut(s)	3320
SphI	GCATGC	1 cut(s)	71
SseBI	AGGCCT	2 cut(s)	1134, 3494
SspI	AATATT	2 cut(s)	2143, 3343
StuI	AGGCCT	2 cut(s)	1134, 3494
StyD4I	CCNGG	9 cut(s)	62, 365, 419, 611, 1366, 2244, 2917, 3557, 3831
StyI	CCWWGG	2 cut(s)	40, 1898
TaiI	ACGT	5 cut(s)	358, 560, 1028, 2803, 3235
TaqII	GACCGA	2 cut(s)	651, 2663
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	2 cut(s)	10, 837
TfiI	GAWTC	8 cut(s)	236, 566, 1803, 2287, 2467, 3088, 3115, 3328
TscAI	CASTG	3 cut(s)	134, 2439, 3373
TseFI	GTSAC	5 cut(s)	1067, 1909, 2801, 3266, 3302
TseI	GCWGC	9 cut(s)	79, 539, 979, 1918, 2029, 2387, 3191, 3542, 3635
Tsp45I	GTSAC	5 cut(s)	1067, 1909, 2801, 3266, 3302
TspGWI	ACGGA	6 cut(s)	725, 878, 2016, 2534, 2832, 4026
TspRI	CASTG	3 cut(s)	134, 2439, 3373
Van91I	CCANNNNNTGG	4 cut(s)	809, 2832, 3608, 3979
Vha464I	CTTAAG	2 cut(s)	74, 3941
VpaK11BI	GGWCC	5 cut(s)	139, 388, 667, 691, 1840
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	6 cut(s)	623, 798, 1467, 1483, 1575, 3533
XbaI	TCTAGA	1 cut(s)	1043
XceI	RCATGY	3 cut(s)	71, 1711, 3752
XcmI	CCANNNNNNNNNTGG	3 cut(s)	2505, 2748, 3588
XhoI	CTCGAG	1 cut(s)	2878
XmaJI	CCTAGG	1 cut(s)	1898
XmiI	GTMKAC	3 cut(s)	2438, 2822, 3897
XmnI	GAANNNNTTC	3 cut(s)	950, 1610, 2952
Zsp2I	ATGCAT	2 cut(s)	1353, 2541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.