Rorug05G0409500
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
56530156 .. 56531060
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0409500.1

Sequence Viewer

Length: 414 bp
ATGGATTTTAACAGGAACAAGATTGAAATGTATGAGTGGCGGAACTGTGTAGGAGGCTCCTTGGGCTATAGCCTAATCGAGATTTGGGATGAAAAACCTTCAAAACTCTCCAAGTCTCCATACTCCAATCTGAATGCACAGAACAGTGGAAGCCGAACTGAGGAAGAGCTGCAGATCGGAGCTGCGGAAGTGCGGAGACTAAATCATTATGGTGATATCTCTCTGCCCTGCTTCACCACAGACGGGTATTCTGCTCTGCTCTGCTCTGCTTCTCGATCTTGTTTTCTTCATGATTCCCCGTTGGTTTGCTTTCACCAAGATCTAAGAGTTTTCTCCGATCTAAGTGTTGACGGGTGGTGGCTTTCTTCTCTATCCAAATCAGAATTAGATGATGCCAAGCCTCATCGTCCCTGA

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

5.29

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018257)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 40, 185, 193
AfiI CCNNNNNNNGG 2 cut(s) 160, 243
AgsI TTSAA 2 cut(s) 26, 102
AluBI AGCT 2 cut(s) 169, 182
AluI AGCT 2 cut(s) 169, 182
Alw26I GTCTC 2 cut(s) 120, 190
ApeKI GCWGC 2 cut(s) 169, 182
AsuHPI GGTGA 3 cut(s) 224, 226, 305
BbvI GCAGC 2 cut(s) 156, 169
BcoDI GTCTC 2 cut(s) 120, 190
BfmI CTRYAG 2 cut(s) 67, 170
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 170, 183
BlsI GCNGC 2 cut(s) 171, 184
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 243
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 160, 243
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 156, 169
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 160, 243
BsmAI GTCTC 2 cut(s) 120, 190
BsmFI GGGAC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 174, 275, 319, 337
BspACI CCGC 3 cut(s) 40, 185, 193
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 174, 275, 319, 337
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 47, 146
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 159, 323, 341
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 4 cut(s) 177, 278, 322, 340
BstMAI GTCTC 2 cut(s) 120, 190
BstMBI GATC 4 cut(s) 174, 275, 319, 337
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSFI CTRYAG 2 cut(s) 67, 170
BstV1I GCAGC 2 cut(s) 156, 169
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 289
CviAII CATG 1 cut(s) 290
CviJI RGCY 8 cut(s) 57, 66, 72, 153, 169, 182, 361, 400
CviKI_1 RGCY 8 cut(s) 57, 66, 72, 153, 169, 182, 361, 400
DdeI CTNAG 3 cut(s) 159, 323, 341
DpnI GATC 4 cut(s) 176, 277, 321, 339
DpnII GATC 4 cut(s) 174, 275, 319, 337
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 60
Eco32I GATATC 1 cut(s) 217
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 293
FaiI YATR 5 cut(s) 33, 69, 121, 210, 291
FaqI GGGAC 1 cut(s) 393
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 170, 183
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 170, 183
GluI GCNGC 2 cut(s) 170, 183
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 293
HphI GGTGA 3 cut(s) 224, 226, 305
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 132, 179, 337, 382
Hpy188III TCNNGA 3 cut(s) 79, 273, 290
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 47, 146
HpyCH4V TGCA 2 cut(s) 137, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 159, 323, 341
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 4 cut(s) 174, 275, 319, 337
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 62, 179
LpnPI CCDG 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 156, 169
LweI GCATC 1 cut(s) 382
MalI GATC 4 cut(s) 176, 277, 321, 339
MboI GATC 4 cut(s) 174, 275, 319, 337
MboII GAAGA 3 cut(s) 176, 278, 357
MflI RGATCY 1 cut(s) 319
MluCI AATT 1 cut(s) 383
MnlI CCTC 3 cut(s) 47, 154, 411
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 4 cut(s) 174, 275, 319, 337
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 58
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 159
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 171, 184
PspN4I GGNNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 170, 183
Sau3AI GATC 4 cut(s) 174, 275, 319, 337
SetI ASST 3 cut(s) 100, 171, 184
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 2 cut(s) 67, 170
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 1 cut(s) 383
SsiI CCGC 3 cut(s) 40, 185, 193
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 47, 146
TaqI TCGA 2 cut(s) 78, 274
TasI AATT 1 cut(s) 383
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 151
TseI GCWGC 2 cut(s) 169, 182
TspDTI ATGAA 2 cut(s) 105, 278
TspRI CASTG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.