Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018257

Physical Location & Seq

Genomic Coordinates Reverse (-)

63976779 .. 63980898

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGGATGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTTGCTATAGAGGTGCAGATGTGTTCTTGTTGGCCTTCTCTCTCATCAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGCAAGTCCCTTAAAGAAAAATGCATGTATAGGAGTCGATATTCTATCGTCTTTCTCTTGCTTCCTAATAGAAGTTCTTGTTGTCAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

9.22

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	19 - 83	2.7e-17	Ras family
Roc	PF08477	19 - 77	7e-08	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018257)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012900
rosa_rugosa	Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha	Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana	Rw3G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	45
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	4 cut(s)	23, 45, 80, 117
AspS9I	GGNCC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 165
Bse118I	RCCGGY	2 cut(s)	43, 72
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	12, 262
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
BseMII	CTCAG	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	25, 47, 82, 119
BsiSI	CCGG	2 cut(s)	44, 73
BslFI	GGGAC	3 cut(s)	49, 185, 285
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	3 cut(s)	49, 185, 285
BsnI	GGCC	4 cut(s)	25, 47, 82, 119
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	4 cut(s)	25, 47, 82, 119
BspCNI	CTCAG	1 cut(s)	69
BsrFI	RCCGGY	2 cut(s)	43, 72
BssAI	RCCGGY	2 cut(s)	43, 72
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	199, 249
BstC8I	GCNNGC	2 cut(s)	45, 142
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	12, 262
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	25, 47, 82, 119
BtsCI	GGATG	2 cut(s)	12, 262
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	45, 142
Cfr10I	RCCGGY	2 cut(s)	43, 72
Cfr13I	GGNCC	1 cut(s)	24
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	7 cut(s)	25, 47, 76, 82, 119, 140, 144
CviKI_1	RGCY	7 cut(s)	25, 47, 76, 82, 119, 140, 144
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	321
FaiI	YATR	6 cut(s)	93, 147, 189, 319, 323, 385
FaqI	GGGAC	3 cut(s)	49, 185, 285
FatI	CATG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	2 cut(s)	19, 249
FspBI	CTAG	1 cut(s)	227
HaeIII	GGCC	4 cut(s)	25, 47, 82, 119
HapII	CCGG	2 cut(s)	44, 73
Hin1II	CATG	1 cut(s)	321
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	44, 73
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	199, 249
HpyCH4V	TGCA	2 cut(s)	101, 317
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	8 cut(s)	40, 57, 86, 154, 186, 252, 278, 279
MaeI	CTAG	1 cut(s)	227
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	204
MluCI	AATT	2 cut(s)	176, 204
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	72, 89, 93, 174
Mph1103I	ATGCAT	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	2 cut(s)	44, 73
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	267
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	3 cut(s)	100, 146, 175
SfcI	CTRYAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	176, 204
SseBI	AGGCCT	1 cut(s)	82
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	199, 249
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	176, 204
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	165
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.