Rh6DG153800
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018257
Physical Location & Seq
Forward (+)
22837733 .. 22839823
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG153800.1

Sequence Viewer

Length: 300 bp
ATGTGGATGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTTGCTATAGAGTGGATACTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTGCTGCAGTCTATATTGAGTGCAGCTCCAATACTCAGCAGAGATCATAG

Protein Analysis

99

Amino Acids

11.25

Weight (kDa)

8.97

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 36 - 97 4.3e-06 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018257)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002701.1_g000001
rosa_roxburghii Rroxscaffold_1G00012900
rosa_rugosa Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana Rw3G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 162
AoxI GGCC 3 cut(s) 23, 45, 80
ApeKI GCWGC 2 cut(s) 254, 273
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 241, 285
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 94
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 91, 255
BfuI GTATCC 1 cut(s) 94
BisI GCNGC 2 cut(s) 255, 274
BlsI GCNGC 2 cut(s) 256, 275
Bme1390I CCNGG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu10I CCTNAGC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse118I RCCGGY 2 cut(s) 43, 72
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 12, 193
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseMII CTCAG 2 cut(s) 68, 299
BseXI GCAGC 2 cut(s) 241, 285
BsgI GTGCAG 1 cut(s) 292
BshFI GGCC 3 cut(s) 25, 47, 82
BsiSI CCGG 2 cut(s) 44, 73
BslFI GGGAC 2 cut(s) 49, 116
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 49, 116
BsnI GGCC 3 cut(s) 25, 47, 82
Bsp143I GATC 2 cut(s) 190, 293
BspANI GGCC 3 cut(s) 25, 47, 82
BspCNI CTCAG 2 cut(s) 69, 298
BspMAI CTGCAG 1 cut(s) 259
BsrFI RCCGGY 2 cut(s) 43, 72
BssAI RCCGGY 2 cut(s) 43, 72
BssMI GATC 2 cut(s) 190, 293
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 130, 180
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 77, 285
BstF5I GGATG 2 cut(s) 12, 193
BstKTI GATC 2 cut(s) 193, 296
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 2 cut(s) 190, 293
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 2 cut(s) 91, 255
BstV1I GCAGC 2 cut(s) 241, 285
BstV2I GAAGAC 1 cut(s) 248
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 25, 47, 82
BtsCI GGATG 2 cut(s) 12, 193
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 45
Cfr10I RCCGGY 2 cut(s) 43, 72
Cfr13I GGNCC 1 cut(s) 24
CviJI RGCY 5 cut(s) 25, 47, 76, 82, 276
CviKI_1 RGCY 5 cut(s) 25, 47, 76, 82, 276
DdeI CTNAG 2 cut(s) 77, 285
DpnI GATC 2 cut(s) 192, 295
DpnII GATC 2 cut(s) 190, 293
DraIII CACNNNGTG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 162
FaiI YATR 4 cut(s) 93, 120, 264, 298
FaqI GGGAC 2 cut(s) 49, 116
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 255, 274
FokI GGATG 2 cut(s) 19, 180
Fsp4HI GCNGC 2 cut(s) 255, 274
FspBI CTAG 1 cut(s) 158
GluI GCNGC 2 cut(s) 255, 274
HaeIII GGCC 3 cut(s) 25, 47, 82
HapII CCGG 2 cut(s) 44, 73
HpaII CCGG 2 cut(s) 44, 73
HphI GGTGA 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 130, 180
HpyCH4V TGCA 2 cut(s) 257, 273
HpyF3I CTNAG 2 cut(s) 77, 285
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 293
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 6 cut(s) 40, 57, 86, 183, 209, 210
Lsp1109I GCAGC 2 cut(s) 241, 285
MaeI CTAG 1 cut(s) 158
MalI GATC 2 cut(s) 192, 295
MboI GATC 2 cut(s) 190, 293
MboII GAAGA 3 cut(s) 74, 250, 253
MfeI CAATTG 2 cut(s) 135, 246
MluCI AATT 3 cut(s) 107, 135, 246
MnlI CCTC 4 cut(s) 72, 93, 105, 223
MroNI GCCGGC 1 cut(s) 43
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 44, 73
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 2 cut(s) 135, 246
MvaI CCWGG 1 cut(s) 198
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 2 cut(s) 190, 293
NgoMIV GCCGGC 1 cut(s) 43
PceI AGGCCT 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 256, 275
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 2 cut(s) 255, 274
Sau3AI GATC 2 cut(s) 190, 293
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 198
SetI ASST 1 cut(s) 278
SfcI CTRYAG 2 cut(s) 91, 255
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 107, 135, 246
SseBI AGGCCT 1 cut(s) 82
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 130, 180
TasI AATT 3 cut(s) 107, 135, 246
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 254, 273
TspRI CASTG 1 cut(s) 45
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.