Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005790

Physical Location & Seq

Genomic Coordinates Forward (+)

36268865 .. 36274973

Gene Structure 6109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAATCGGGCATGCTAGTCGTGGAAGCATCATTTGGTGTTCTTCATAAGGGCTCAAGTATGGAAAAATATTGGGATGCTTTAAGGAATTCGTGGATATGGGAAGAATTTTATAGAGCATGGAACTTCCGACCGGCATTTGAGTATGGACTTATTCCTGAGCCAAGCTCCAATGAGAGCCCGAGTCCAAGACCACCACTCATCACCTCCGGCCTCCGCACACATCTCTCAAGACCATCTCGGCGCTGCCTCCAGCATTCTTCGATCACCACGACACCACCATTAGCGAGCTCGAGAGGAAGCTGCTATCACGGAGAGCTGCGCCAACTCAACCACAGAAGTCGCACGAACACCATCGCCGGAGACGCCGGCGTGGACCGAGCTCCTCACACACCTTCGATCCGTCTTGGGTCAATGCACTCTCAACCGGCCAAAATCGTGGTAAGGCCTTCGGCTTGGATCATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004174 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009063 GO:0009081 GO:0009083 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009987 GO:0015980 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0016491 GO:0016645 GO:0016649 GO:0016722 GO:0017133 GO:0019395 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0030258 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032592 GO:0032787 GO:0032991 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043783 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045251 GO:0045333 GO:0046395 GO:0048037 GO:0048038 GO:0048039 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051539 GO:0051540 GO:0055114 GO:0070013 GO:0071704 GO:0072329 GO:0097159 GO:0098573 GO:0098798 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF_QO FAD_binding_2 NAD_binding_8

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

10.2

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43400 AT2G43400
fragaria_vesca	FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960
malus_domestica	MD04G1042900.v1.1
prunus_persica	Prupe.1G197500_v2.0.a1
pyrus_communis	pycom04g03770
rosa_chinensis	RchiOBHm_Chr4g0406421
rosa_laevigata	RLG00000008773
rosa_multiflora	Rmu_ssc0000186.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028480 Rroxscaffold_5G00351230
rosa_rugosa	Rorug04G0069200
rosa_samantha	Rh4AG138000 Rh4BG135300 Rh4CG145700 Rh4DG132700
rosa_wichuraiana	Rw4G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	394, 467
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	88, 107
AcyI	GRCGYC	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	5 cut(s)	168, 291, 303, 319, 383
AluI	AGCT	5 cut(s)	168, 291, 303, 319, 383
Alw21I	GWGCWC	2 cut(s)	293, 385
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	394, 467
Ama87I	CYCGRG	2 cut(s)	181, 292
AoxI	GGCC	3 cut(s)	211, 429, 446
ApeKI	GCWGC	3 cut(s)	246, 303, 319
ApoI	RAATTY	2 cut(s)	88, 107
AspLEI	GCGC	2 cut(s)	246, 324
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	196, 259
AvaI	CYCGRG	2 cut(s)	181, 292
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	4 cut(s)	56, 182, 293, 385
Bbv12I	GWGCWC	2 cut(s)	293, 385
BbvI	GCAGC	3 cut(s)	233, 290, 306
BccI	CCATC	2 cut(s)	244, 362
BcgI	CGANNNNNNTGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	2 cut(s)	17, 469
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	3 cut(s)	247, 304, 320
BlsI	GCNGC	3 cut(s)	248, 305, 321
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	2 cut(s)	181, 292
BmgT120I	GGNCC	1 cut(s)	376
BmsI	GCATC	2 cut(s)	38, 67
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	40, 214
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	366
Bse118I	RCCGGY	3 cut(s)	133, 368, 427
Bse8I	GATNNNNATC	1 cut(s)	464
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	233, 290, 306
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	213, 431, 448
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	293, 385
BsiHKCI	CYCGRG	2 cut(s)	181, 292
BsiSI	CCGG	5 cut(s)	134, 210, 360, 369, 428
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	213, 431, 448
BsoBI	CYCGRG	2 cut(s)	181, 292
Bsp1286I	GDGCHC	4 cut(s)	56, 182, 293, 385
Bsp143I	GATC	4 cut(s)	264, 399, 459, 465
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	3 cut(s)	213, 431, 448
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	462
BspPI	GGATC	2 cut(s)	394, 467
BsrFI	RCCGGY	3 cut(s)	133, 368, 427
BssAI	RCCGGY	3 cut(s)	133, 368, 427
BssMI	GATC	4 cut(s)	264, 399, 459, 465
BssNI	GRCGYC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	14, 289, 370
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	2 cut(s)	246, 324
BstKTI	GATC	4 cut(s)	267, 402, 462, 468
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	4 cut(s)	264, 399, 459, 465
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	233, 290, 306
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	213, 431, 448
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	14, 289, 370
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	2 cut(s)	246, 324
Cfr10I	RCCGGY	3 cut(s)	133, 368, 427
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	1 cut(s)	374
CviAII	CATG	3 cut(s)	13, 120, 463
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	266, 401, 461, 467
DpnII	GATC	4 cut(s)	264, 399, 459, 465
EaeI	YGGCCR	1 cut(s)	429
Ecl136II	GAGCTC	2 cut(s)	291, 383
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	4 cut(s)	56, 182, 293, 385
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	2 cut(s)	291, 383
Eco88I	CYCGRG	2 cut(s)	181, 292
EcoICRI	GAGCTC	2 cut(s)	291, 383
EcoRI	GAATTC	1 cut(s)	88
EcoT38I	GRGCYC	4 cut(s)	56, 182, 293, 385
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	3 cut(s)	16, 123, 466
FaiI	YATR	8 cut(s)	14, 48, 62, 100, 114, 121, 147, 464
FatI	CATG	3 cut(s)	12, 119, 462
Fnu4HI	GCNGC	3 cut(s)	247, 304, 320
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	4 cut(s)	56, 182, 293, 385
Fsp4HI	GCNGC	3 cut(s)	247, 304, 320
FspBI	CTAG	2 cut(s)	17, 469
GlaI	GCGC	2 cut(s)	245, 323
GluI	GCNGC	3 cut(s)	247, 304, 320
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	213, 431, 448
HapII	CCGG	5 cut(s)	134, 210, 360, 369, 428
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	246, 324
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	16, 123, 466
Hin6I	GCGC	2 cut(s)	244, 322
HinP1I	GCGC	2 cut(s)	244, 322
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	5 cut(s)	134, 210, 360, 369, 428
HphI	GGTGA	2 cut(s)	196, 259
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	4 cut(s)	158, 231, 294, 463
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	405, 459
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	16, 123, 466
HspAI	GCGC	2 cut(s)	244, 322
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	264, 399, 459, 465
LmnI	GCTCC	2 cut(s)	173, 388
LpnPI	CCDG	7 cut(s)	147, 171, 223, 266, 373, 382, 441
Lsp1109I	GCAGC	3 cut(s)	233, 290, 306
LweI	GCATC	2 cut(s)	38, 67
MaeI	CTAG	2 cut(s)	17, 469
MalI	GATC	4 cut(s)	266, 401, 461, 467
MboI	GATC	4 cut(s)	264, 399, 459, 465
MboII	GAAGA	3 cut(s)	35, 116, 252
MhlI	GDGCHC	4 cut(s)	56, 182, 293, 385
MluCI	AATT	2 cut(s)	88, 107
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	217, 224, 260, 290, 396
MreI	CGCCGGCG	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	368
MseI	TTAA	1 cut(s)	83
MspI	CCGG	5 cut(s)	134, 210, 360, 369, 428
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	365
NaeI	GCCGGC	1 cut(s)	370
NdeII	GATC	4 cut(s)	264, 399, 459, 465
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	3 cut(s)	16, 123, 466
NmeAIII	GCCGAG	1 cut(s)	220
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	248, 305, 321
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	2 cut(s)	293, 385
PspPI	GGNCC	1 cut(s)	376
SacI	GAGCTC	2 cut(s)	293, 385
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	247, 304, 320
Sau3AI	GATC	4 cut(s)	264, 399, 459, 465
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	4 cut(s)	56, 182, 293, 385
SetI	ASST	7 cut(s)	170, 209, 293, 305, 321, 385, 397
SfaNI	GCATC	2 cut(s)	38, 67
Sfr274I	CTCGAG	1 cut(s)	292
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	3 cut(s)	55, 229, 292
SmoI	CTYRAG	3 cut(s)	55, 229, 292
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	88, 107
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	2 cut(s)	17, 469
SstI	GAGCTC	2 cut(s)	293, 385
StuI	AGGCCT	1 cut(s)	448
TaqI	TCGA	3 cut(s)	263, 293, 398
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	88, 107
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	3 cut(s)	246, 303, 319
TspDTI	ATGAA	2 cut(s)	17, 35
TspGWI	ACGGA	2 cut(s)	327, 392
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	88, 107
XceI	RCATGY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	292
XspI	CTAG	2 cut(s)	17, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.