Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005790

Physical Location & Seq

Genomic Coordinates Reverse (-)

35183632 .. 35197107

Gene Structure 13476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGTCGATCATGCTGAGTCATATTCTGAAACGAAACTCGAATTCGTACATTGGGCGGCTGGCTTCTGCTTCCGCGTCTGGACGGCTATTCTCGTGGAGGAGGAGGACTTTCTGCAGTGAACCGCAGAGAGAGTCTATTCAATACGACGTCGTGATAGTTGGGGCGGGGCCGGCTGGTTTATCGGCGGCGATTAGGTTCAAACAATTGTGCCGTGAAAATGATACTGATTTGTCAGTCTGCGTTGTGGAGAAAGGAGCTGAAGTCGGTGCTCACATTATTTCTGGTAATGTCTTTGAACCCCGGGCTCTGGATGAACTTCTCCCACAATGGAGACAGGAAGAGTCACCCATCACCGTCCCTGTTTCTTCTGACAAGTTTTTGTTACTTACAAAGAATCATGCATTTTCGCTGCCTTGTCCTTTTAATAACAGAGGAAACTATGTCATAAGTTTAAGTCAGTTAGTACGATGGATGGGAGTGAAGGCAGAAGAATTGGGAGTAGAAATATATCCAGGCTTTGCTGCTAGTGAGATATTATATGATTCAAATGACACTGTTGTTGGCATTCGAACTAATGATATGGGAATATCCAAAGATGGTTCAAAGAAGGAAAATTTTCAACCTGGCATAGAATTGAAAGGGCGGGTCACACTTCTAGCTGAAGGGTGTCGAGGATCATTGTCAGAGAAAATAATGGATAAATACAACTTGAGAGAGAAGGGGCATGCTCAGCATCAGACTTATGCTTTGGGAATCAAAGAGGTTTGGGAAATTGATGAGAGAAAACACAAACCAGGTGCTGTGATTCACACGCTTGGTTGGCCCTTGGATCAGAAGACATATGGAGGTTCATTTCTGTACCACATGAAAGATAGACAGATTTCTATTGGCTTTGTGGTTGCTTTGAATTATCAAAACCCTTTCTTAAGTCCATATGAAGAATTCCAGAAATTTAAGCATCATCCTGCAATCAAGCCACTGCTAGAGGGTGGGACTGTTCTTCAATATGGCGCTCGCACCTTGAATGAAGGTGGCTTTCAGTCTATCCCATATCCAGCTTTCCCTGGAGGAGCAGTTATTGGATGCTCTGCTGGCTTTTTAAATGTACCAAAAATTAAGGGAACACATACTGCAATGAAATCAGGCATGCTAGCTGCGGAAGCATCGTTTGGTGTTCTTCATAAAGGCTCAAGTTTGGAAAAATACTGGGATGCTTTAAGGAATTCGTGGATATGGGAAGAATTATATAGAGCACGGAACTTCCGACCGGCATTTGAGTATGGACTTATTCCTGGCTTGGCCATAAGTGCGTTAGAACACTACATAATGAAAGGGAGAGCTGCCTTAACGCTGAAGCATGGAAAACCTGATAATGAAGCAACAAATGTTGCAGAGTTCCACTGTCCAATTAAATATCCAAAGCCAGATGGGGTTTTATCTTTTGATATTCCAACCTCCCTACACAGGAGCAATACAAATCATGAGCATGACCAACCAGCTCACCTTCGGTTGAAGGACCCGAAGAAGCCTGAACTTGTCAACTTGCCAGTGTATGCTGGTCCTGAGTCACGATATTGTCCTGCACGTGTTTACGAGTATAACCCTGATGAAACGGGTCAGCTGAAGTTGCAGATCAACGCTCAGAATTGCTTACATTGCAAGGCTTGCGATATCAAAGACCCTAAGCAAAACATAGAGTGGACTGCGCCAGAAGGAGGTGGTGGCCCAGGCTATTCAATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004174 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009063 GO:0009081 GO:0009083 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009987 GO:0015980 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0016491 GO:0016645 GO:0016649 GO:0016722 GO:0017133 GO:0019395 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0030258 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032592 GO:0032787 GO:0032991 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043783 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045251 GO:0045333 GO:0046395 GO:0048037 GO:0048038 GO:0048039 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051539 GO:0051540 GO:0055114 GO:0070013 GO:0071704 GO:0072329 GO:0097159 GO:0098573 GO:0098798 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF_QO FAD_binding_2 NAD_binding_8

Protein Analysis

581

Amino Acids

64.7

Weight (kDa)

8.45

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETFQO_UQ-bd	PF21162	248 - 341	1e-43	ETF-QO, ubiquinone-binding
Fer4_ETF_QO	PF05187	477 - 579	3.1e-45	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43400 AT2G43400
fragaria_vesca	FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960 FvH4_4g10960
malus_domestica	MD04G1042900.v1.1
prunus_persica	Prupe.1G197500_v2.0.a1
pyrus_communis	pycom04g03770
rosa_chinensis	RchiOBHm_Chr4g0406421
rosa_laevigata	RLG00000008773
rosa_multiflora	Rmu_ssc0000186.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028480 Rroxscaffold_5G00351230
rosa_rugosa	Rorug04G0069200
rosa_samantha	Rh4AG138000 Rh4BG135300 Rh4CG145700 Rh4DG132700
rosa_wichuraiana	Rw4G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccII	CGCG	1 cut(s)	74
AciI	CCGC	7 cut(s)	55, 72, 122, 164, 185, 643, 1157
AclWI	GGATC	2 cut(s)	682, 837
AcoI	YGGCCR	1 cut(s)	1299
AcsI	RAATTY	5 cut(s)	40, 613, 941, 950, 1222
AcuI	CTGAAG	4 cut(s)	279, 681, 1373, 1643
AcvI	CACGTG	1 cut(s)	1586
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	4 cut(s)	47, 465, 860, 1107
AfiI	CCNNNNNNNGG	3 cut(s)	307, 1464, 1715
AflII	CTTAAG	1 cut(s)	925
AflIII	ACRYGT	1 cut(s)	1585
AjnI	CCWGG	6 cut(s)	511, 622, 793, 1063, 1291, 1726
AjuI	GAANNNNNNNTTGG	2 cut(s)	1152, 1184
AluBI	AGCT	7 cut(s)	257, 659, 1058, 1154, 1340, 1499, 1621
AluI	AGCT	7 cut(s)	257, 659, 1058, 1154, 1340, 1499, 1621
Alw21I	GWGCWC	2 cut(s)	271, 1255
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	682, 837
AlwNI	CAGNNNCTG	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	4 cut(s)	167, 821, 1299, 1723
ApeKI	GCWGC	4 cut(s)	409, 521, 1154, 1340
ApoI	RAATTY	5 cut(s)	40, 613, 941, 950, 1222
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	2 cut(s)	1013, 1708
AspS9I	GGNCC	5 cut(s)	167, 822, 1516, 1559, 1724
AsuC2I	CCSGG	2 cut(s)	301, 302
AsuHPI	GGTGA	3 cut(s)	336, 343, 1493
AsuII	TTCGAA	1 cut(s)	568
AsuNHI	GCTAGC	1 cut(s)	1150
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	1516, 1559
BalI	TGGCCA	1 cut(s)	1301
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	1586
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	2 cut(s)	271, 1255
BbvI	GCAGC	4 cut(s)	396, 508, 1141, 1327
BccI	CCATC	5 cut(s)	356, 462, 466, 590, 1421
BceAI	ACGGC	2 cut(s)	98, 195
BciT130I	CCWGG	6 cut(s)	513, 624, 795, 1065, 1293, 1728
BcnI	CCSGG	2 cut(s)	301, 302
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	4 cut(s)	525, 656, 983, 1151
BfmI	CTRYAG	1 cut(s)	112
BfoI	RGCGCY	1 cut(s)	1014
BfrI	CTTAAG	1 cut(s)	925
BisI	GCNGC	6 cut(s)	56, 186, 410, 522, 1155, 1341
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	6 cut(s)	57, 187, 411, 523, 1156, 1342
Bme1390I	CCNGG	8 cut(s)	301, 302, 513, 624, 795, 1065, 1293, 1728
Bme18I	GGWCC	2 cut(s)	1516, 1559
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	5 cut(s)	167, 822, 1516, 1559, 1724
BmiI	GGNNCC	2 cut(s)	168, 1518
BmrFI	CCNGG	8 cut(s)	301, 302, 513, 624, 795, 1065, 1293, 1728
BmrI	ACTGGG	1 cut(s)	1216
BmsI	GCATC	5 cut(s)	742, 967, 1073, 1172, 1201
BmtI	GCTAGC	1 cut(s)	1154
BmuI	ACTGGG	1 cut(s)	1216
BpiI	GAAGAC	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	1086
Bpu10I	CCTNAGC	1 cut(s)	1683
Bpu1102I	GCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	2 cut(s)	730, 1174
BpuMI	CCSGG	2 cut(s)	301, 302
BsaAI	YACGTR	1 cut(s)	1586
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	299, 300, 825, 1063, 1726
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 1059, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 1464, 1715
Bse118I	RCCGGY	2 cut(s)	169, 1267
Bse1I	ACTGG	2 cut(s)	1211, 1547
Bse3DI	GCAATG	2 cut(s)	1140, 1654
BseBI	CCWGG	6 cut(s)	513, 624, 795, 1065, 1293, 1728
BseDI	CCNNGG	5 cut(s)	299, 300, 825, 1063, 1726
BseGI	GGATG	5 cut(s)	316, 477, 961, 1088, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	307, 1464, 1715
BseMI	GCAATG	2 cut(s)	1140, 1654
BseMII	CTCAG	4 cut(s)	5, 743, 1554, 1655
BseNI	ACTGG	2 cut(s)	1211, 1547
BseRI	GAGGAG	3 cut(s)	112, 115, 1083
BseXI	GCAGC	4 cut(s)	396, 508, 1141, 1327
BsgI	GTGCAG	1 cut(s)	1566
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	1268
BshFI	GGCC	4 cut(s)	169, 823, 1301, 1725
BsiEI	CGRYCG	1 cut(s)	1268
BsiHKAI	GWGCWC	2 cut(s)	271, 1255
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	170, 301, 1268
BslFI	GGGAC	2 cut(s)	341, 1006
BslI	CCNNNNNNNGG	3 cut(s)	307, 1464, 1715
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	2 cut(s)	341, 1006
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	4 cut(s)	169, 823, 1301, 1725
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	3 cut(s)	271, 307, 1255
Bsp143I	GATC	4 cut(s)	6, 674, 829, 1632
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	7 cut(s)	55, 72, 122, 164, 185, 643, 1157
BspANI	GGCC	4 cut(s)	169, 823, 1301, 1725
BspCNI	CTCAG	4 cut(s)	6, 742, 1555, 1654
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	1480
BspLI	GGNNCC	2 cut(s)	168, 1518
BspMAI	CTGCAG	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	1154
BspPI	GGATC	2 cut(s)	682, 837
BspT104I	TTCGAA	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	925
BsrDI	GCAATG	2 cut(s)	1140, 1654
BsrFI	RCCGGY	2 cut(s)	169, 1267
BsrI	ACTGG	2 cut(s)	1211, 1547
BssAI	RCCGGY	2 cut(s)	169, 1267
BssECI	CCNNGG	5 cut(s)	299, 300, 825, 1063, 1726
BssMI	GATC	4 cut(s)	6, 674, 829, 1632
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	825
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	6 cut(s)	513, 624, 795, 1065, 1293, 1728
Bst4CI	ACNGT	4 cut(s)	355, 556, 997, 1403
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	925
BstAPI	GCANNNNNTGC	1 cut(s)	1665
BstBAI	YACGTR	1 cut(s)	1586
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	8 cut(s)	60, 171, 726, 1015, 1093, 1148, 1152, 1666
BstDEI	CTNAG	5 cut(s)	14, 729, 1563, 1641, 1683
BstF5I	GGATG	5 cut(s)	316, 477, 961, 1088, 1216
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	1014
BstHHI	GCGC	2 cut(s)	1013, 1708
BstKTI	GATC	4 cut(s)	9, 677, 832, 1635
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	6, 674, 829, 1632
BstMCI	CGRYCG	1 cut(s)	1268
BstMWI	GCNNNNNNNGC	9 cut(s)	170, 730, 820, 1092, 1160, 1307, 1627, 1656, 1665
BstNI	CCWGG	6 cut(s)	513, 624, 795, 1065, 1293, 1728
BstNSI	RCATGY	2 cut(s)	728, 1150
BstSCI	CCNGG	8 cut(s)	299, 300, 511, 622, 793, 1063, 1291, 1726
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	4 cut(s)	396, 508, 1141, 1327
BstV2I	GAAGAC	1 cut(s)	842
BsuRI	GGCC	4 cut(s)	169, 823, 1301, 1725
BtsCI	GGATG	5 cut(s)	316, 477, 961, 1088, 1216
BtsI	GCAGTG	2 cut(s)	121, 977
BtsIMutI	CAGTG	5 cut(s)	121, 552, 977, 1399, 1554
Cac8I	GCNNGC	8 cut(s)	60, 171, 726, 1015, 1093, 1148, 1152, 1666
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	1480
CfoI	GCGC	2 cut(s)	1013, 1708
Cfr10I	RCCGGY	2 cut(s)	169, 1267
Cfr13I	GGNCC	5 cut(s)	167, 822, 1516, 1559, 1724
Cfr9I	CCCGGG	1 cut(s)	300
CseI	GACGC	1 cut(s)	63
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	4 cut(s)	46, 464, 859, 1106
CviAII	CATG	8 cut(s)	10, 398, 725, 865, 1147, 1358, 1481, 1487
CviQI	GTAC	4 cut(s)	46, 464, 859, 1106
DdeI	CTNAG	5 cut(s)	14, 729, 1563, 1641, 1683
DpnI	GATC	4 cut(s)	8, 676, 831, 1634
DpnII	GATC	4 cut(s)	6, 674, 829, 1632
DraI	TTTAAA	1 cut(s)	1101
EaeI	YGGCCR	1 cut(s)	1299
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	1672
Eco47I	GGWCC	2 cut(s)	1516, 1559
Eco57I	CTGAAG	4 cut(s)	279, 681, 1373, 1643
Eco72I	CACGTG	1 cut(s)	1586
Eco88I	CYCGRG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	1516
EcoRI	GAATTC	3 cut(s)	40, 941, 1222
EcoRII	CCWGG	6 cut(s)	511, 622, 793, 1063, 1291, 1726
EcoRV	GATATC	1 cut(s)	1672
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	8 cut(s)	13, 401, 728, 868, 1150, 1361, 1484, 1490
FaqI	GGGAC	2 cut(s)	341, 1006
FatI	CATG	8 cut(s)	9, 397, 724, 864, 1146, 1357, 1480, 1486
FauI	CCCGC	2 cut(s)	157, 636
FauNDI	CATATG	2 cut(s)	841, 934
Fnu4HI	GCNGC	6 cut(s)	56, 186, 410, 522, 1155, 1341
FokI	GGATG	5 cut(s)	323, 484, 948, 1095, 1223
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	6 cut(s)	56, 186, 410, 522, 1155, 1341
FspBI	CTAG	4 cut(s)	525, 656, 983, 1151
GlaI	GCGC	2 cut(s)	1012, 1707
GluI	GCNGC	6 cut(s)	56, 186, 410, 522, 1155, 1341
GsuI	CTGGAG	1 cut(s)	1086
HaeII	RGCGCY	1 cut(s)	1014
HaeIII	GGCC	4 cut(s)	169, 823, 1301, 1725
HapII	CCGG	3 cut(s)	170, 301, 1268
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	2 cut(s)	1013, 1708
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	8 cut(s)	13, 401, 728, 868, 1150, 1361, 1484, 1490
Hin6I	GCGC	2 cut(s)	1011, 1706
HinP1I	GCGC	2 cut(s)	1011, 1706
HincII	GTYRAC	1 cut(s)	1540
HindII	GTYRAC	1 cut(s)	1540
HinfI	GANTC	8 cut(s)	16, 131, 341, 394, 542, 753, 805, 1565
HpaII	CCGG	3 cut(s)	170, 301, 1268
HphI	GGTGA	3 cut(s)	336, 343, 1493
Hpy166II	GTNNAC	4 cut(s)	119, 1540, 1591, 1701
Hpy188I	TCNGA	7 cut(s)	27, 370, 685, 738, 834, 1265, 1644
Hpy188III	TCNNGA	7 cut(s)	78, 151, 308, 946, 1481, 1562, 1569
Hpy8I	GTNNAC	4 cut(s)	119, 1540, 1591, 1701
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	8 cut(s)	475, 601, 656, 712, 1022, 1507, 1514, 1706
HpyCH4III	ACNGT	4 cut(s)	355, 556, 997, 1403
HpyCH4IV	ACGT	2 cut(s)	147, 1585
HpyCH4V	TGCA	8 cut(s)	114, 401, 968, 1133, 1391, 1583, 1630, 1659
HpyF10VI	GCNNNNNNNGC	9 cut(s)	170, 730, 820, 1092, 1160, 1307, 1627, 1656, 1665
HpyF3I	CTNAG	5 cut(s)	14, 729, 1563, 1641, 1683
HpySE526I	ACGT	2 cut(s)	147, 1585
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	8 cut(s)	13, 401, 728, 868, 1150, 1361, 1484, 1490
HspAI	GCGC	2 cut(s)	1011, 1706
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	6, 674, 829, 1632
LmnI	GCTCC	3 cut(s)	254, 1070, 1467
Lsp1109I	GCAGC	4 cut(s)	396, 508, 1141, 1327
LweI	GCATC	5 cut(s)	742, 967, 1073, 1172, 1201
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	4 cut(s)	525, 656, 983, 1151
MaeII	ACGT	2 cut(s)	147, 1585
MaeIII	GTNAC	4 cut(s)	342, 381, 646, 1566
MalI	GATC	4 cut(s)	8, 676, 831, 1634
MboI	GATC	4 cut(s)	6, 674, 829, 1632
MboII	GAAGA	9 cut(s)	350, 357, 500, 847, 950, 992, 1169, 1250, 1534
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	3 cut(s)	271, 307, 1255
MlsI	TGGCCA	1 cut(s)	1301
MluNI	TGGCCA	1 cut(s)	1301
MlyI	GAGTC	4 cut(s)	25, 140, 350, 1574
MmeI	TCCRAC	2 cut(s)	1288, 1475
Mox20I	TGGCCA	1 cut(s)	1301
Mph1103I	ATGCAT	1 cut(s)	403
MroNI	GCCGGC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	1301
MseI	TTAA	9 cut(s)	423, 452, 926, 954, 1100, 1116, 1217, 1346, 1410
MslI	CAYNNNNRTG	1 cut(s)	1485
Msp20I	TGGCCA	1 cut(s)	1301
MspA1I	CMGCKG	1 cut(s)	1621
MspCI	CTTAAG	1 cut(s)	925
MspI	CCGG	3 cut(s)	170, 301, 1268
MspR9I	CCNGG	8 cut(s)	301, 302, 513, 624, 795, 1065, 1293, 1728
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	6 cut(s)	513, 624, 795, 1065, 1293, 1728
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	9 cut(s)	170, 730, 820, 1092, 1160, 1307, 1627, 1656, 1665
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	2 cut(s)	301, 302
NdeI	CATATG	2 cut(s)	841, 934
NdeII	GATC	4 cut(s)	6, 674, 829, 1632
NgoMIV	GCCGGC	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	1150
NlaIII	CATG	8 cut(s)	13, 401, 728, 868, 1150, 1361, 1484, 1490
NlaIV	GGNNCC	2 cut(s)	168, 1518
NmuCI	GTSAC	3 cut(s)	342, 646, 1566
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	728, 1150
NspV	TTCGAA	1 cut(s)	568
PaeI	GCATGC	2 cut(s)	728, 1150
PagI	TCATGA	1 cut(s)	1480
PcsI	WCGNNNNNNNCGW	1 cut(s)	1261
PctI	GAATGC	1 cut(s)	564
PdiI	GCCGGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	394, 542, 753, 805
PkrI	GCNGC	6 cut(s)	57, 187, 411, 523, 1156, 1342
PleI	GAGTC	4 cut(s)	24, 139, 349, 1573
PmaCI	CACGTG	1 cut(s)	1586
PmlI	CACGTG	1 cut(s)	1586
PpsI	GAGTC	4 cut(s)	24, 139, 349, 1573
Ppu21I	YACGTR	1 cut(s)	1586
PpuMI	RGGWCCY	1 cut(s)	1516
Psp5II	RGGWCCY	1 cut(s)	1516
Psp6I	CCWGG	6 cut(s)	511, 622, 793, 1063, 1291, 1726
PspCI	CACGTG	1 cut(s)	1586
PspGI	CCWGG	6 cut(s)	511, 622, 793, 1063, 1291, 1726
PspN4I	GGNNCC	2 cut(s)	168, 1518
PspPI	GGNCC	5 cut(s)	167, 822, 1516, 1559, 1724
PspPPI	RGGWCCY	1 cut(s)	1516
PstI	CTGCAG	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	1621
RsaI	GTAC	4 cut(s)	47, 465, 860, 1107
RsaNI	GTAC	4 cut(s)	46, 464, 859, 1106
RseI	CAYNNNNRTG	1 cut(s)	1485
SaqAI	TTAA	9 cut(s)	423, 452, 926, 954, 1100, 1116, 1217, 1346, 1410
SatI	GCNGC	6 cut(s)	56, 186, 410, 522, 1155, 1341
Sau3AI	GATC	4 cut(s)	6, 674, 829, 1632
Sau96I	GGNCC	5 cut(s)	167, 822, 1516, 1559, 1724
SchI	GAGTC	4 cut(s)	25, 140, 350, 1574
ScrFI	CCNGG	8 cut(s)	301, 302, 513, 624, 795, 1065, 1293, 1728
SduI	GDGCHC	3 cut(s)	271, 307, 1255
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	5 cut(s)	742, 967, 1073, 1172, 1201
SfcI	CTRYAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	2 cut(s)	1516, 1559
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	1485
SmlI	CTYRAG	3 cut(s)	709, 925, 1189
SmoI	CTYRAG	3 cut(s)	709, 925, 1189
SphI	GCATGC	2 cut(s)	728, 1150
SsiI	CCGC	7 cut(s)	55, 72, 122, 164, 185, 643, 1157
SspMI	CTAG	4 cut(s)	525, 656, 983, 1151
StyD4I	CCNGG	8 cut(s)	299, 300, 511, 622, 793, 1063, 1291, 1726
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	4 cut(s)	355, 556, 997, 1403
TaiI	ACGT	2 cut(s)	150, 1588
TaqI	TCGA	4 cut(s)	5, 38, 568, 670
TauI	GCSGC	2 cut(s)	58, 188
TfiI	GAWTC	4 cut(s)	394, 542, 753, 805
Tru1I	TTAA	9 cut(s)	423, 452, 926, 954, 1100, 1116, 1217, 1346, 1410
Tru9I	TTAA	9 cut(s)	423, 452, 926, 954, 1100, 1116, 1217, 1346, 1410
TscAI	CASTG	5 cut(s)	121, 559, 984, 1406, 1554
TseFI	GTSAC	3 cut(s)	342, 646, 1566
TseI	GCWGC	4 cut(s)	409, 521, 1154, 1340
Tsp45I	GTSAC	3 cut(s)	342, 646, 1566
TspGWI	ACGGA	1 cut(s)	1270
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	5 cut(s)	121, 559, 984, 1406, 1554
Vha464I	CTTAAG	1 cut(s)	925
VpaK11BI	GGWCC	2 cut(s)	1516, 1559
XapI	RAATTY	5 cut(s)	40, 613, 941, 950, 1222
XceI	RCATGY	2 cut(s)	728, 1150
XmaI	CCCGGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	4 cut(s)	525, 656, 983, 1151
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.