Rorug04G0069200

Electron transfer flavoprotein-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
10739620 .. 10742058
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0069200.1

Sequence Viewer

Length: 1743 bp
ATGGCATCAACCACCCTCCCCAAACCGAACCCAATCCCAATCGAACCCGACCCGCCGCAGCCCAACTCCGCCGACCCTCTTGCAATCTACGCCCAAGCGATCAAAACCCACAACGCCGACCGTTCCCTCCACAACCACCTCATCACTCTCTGCTCCAAATCCAACCTCACCTCCTTCTCTCTCCGCCTCTTCAACCAAATCCCATCACCCAACGTCGTCTCATGGACGGCCCTGATCTCATCCCACTCCACCACCCTCGCCGCCCTCCGCCACTTCGTCTCCATGCTCCGCCACCCCACCTTCCCCAACCAGCGCACAATCGCCACCCTCTTCAAAACCTGCGCTTCTCTCTCGTCCCTCTCCTTCGGTCTCTCCCTCCACTCACTCTCCCTCAAGCTCGGTATCTCCGCCGAGCCGTATTCGGGTTCAGCCCTCATACACTTCTACTCCAAATGTGGGATGCCGGTTTATGCCCGGAAGGTGCTCGATGAAATTCCCCACAAGGATGCTGTCTGCTATGGCGCGGTGATTGTTGGGCTGGCGCAGAACTCGAGGCCCATTGATGCGCTTTTGGCTTTTGCTGACATGAAATGTAGAGATGTTGGGTCGAGTATGTATACTGTTTCGGGTGCATTGAGGGCCGCGGCGGAGCTTGCTGCTTTGGAGCAATGTAGGATCATACATACACATGCTGTGGTTACGGGGCTTGATGCGAATGTGGTTGTGGGGACTGCTTTGTTGGATGCGTATGGGAAGTCCGGGCTTGTGTCCGATGCTAGACAGGTTTTCGATGAGAATTTGCTGGTGATGAGTCTTGTGGGATGCAATGCAATGCTGGCGGCGTATGCACAACAGGGGGATAAGAATTCAGCGGTTGAGCTTTTTAATGCAATGGAAGCTCAAGGGCTTGTACCGGATGAATATAGCTTCTTAGCGATTTTGACGTGCCTTGGCAATGCGGGTTTGGTTTTGGAAACGGATTGGTGGTTGAACAGGATGAAGGCTGATTACGTGTTGGAACCAGCACTTGAGCATTATACTTGTCTGGTTGGTGCAATGGGCCGAGCTGGTCAGTTGGAAGATGCTGAAAGGGCTGCAATGACAATGCCTATTGTGCCTGATGCTGCAGTGTGGCGAACATTGCTAACATGTGCAGCTTATCATAAATCACCCGCCTTGGCTAGGTCCATGGCTAAACGGTTATTGGAAATTGATCCGCAGGATGATTCAGCTTATGTTATTGTTGCAAATGTGTTATCATCCGCAGGAAAGTGGGATGAAGTTGCAGAAGTTAGGAAGATGATGAAAGATAGGAGGGTGAAGAAGGAAGGAGGTAGGAGTTGGATTGAAGTGCGAGGAAAAGTTCATGTGTTTTTGGCCGGGGACAGAAGGCATCAAAGAATAGATGAGATATATGCAAAGCTGGCAGAATTGATGGCGGGGATAGAAAAATTAGGGTATGTGCCGTTGCAGAATGAGATGCTGCATGGGGTTGGGGAACAAGAGAAAAAGGAAGCCCTATGGTATCACAGTGAGAAGCTGGCTGTAGCATTTGGGGTGGTAAGTGGTGCTGCACCCCCCGGGAAGCCATTAAGGATTGTGAAGAATTTGAGGATTTGCAGAGATTGTCACGAGGCTTTTAAATATTTGTGTAGGTTGTTGGAGAGGGAAATCATTGTGAGGGATGTAAACCGATACCATATATTTTCAAATGGTAGCTGTAATTGTGGAGAGATGTGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

580

Amino Acids

63.67

Weight (kDa)

7.87

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 270 - 319 6.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 272 - 317 4.1e-09 PPR repeat family
E_motif PF20431 393 - 450 4.2e-17 E motif
DYW_deaminase PF14432 486 - 580 7.9e-33 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 617
AccII CGCG 2 cut(s) 524, 644
AclWI GGATC 2 cut(s) 683, 1208
AcoI YGGCCR 1 cut(s) 1377
AcsI RAATTY 4 cut(s) 492, 796, 865, 1606
AfaI GTAC 1 cut(s) 912
AfiI CCNNNNNNNGG 3 cut(s) 422, 456, 1182
AflIII ACRYGT 2 cut(s) 1011, 1148
AgsI TTSAA 5 cut(s) 193, 334, 991, 1349, 1710
AjiI CACGTC 1 cut(s) 945
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 3 cut(s) 223, 283, 374
AlwI GGATC 2 cut(s) 683, 1208
Ama87I CYCGRG 2 cut(s) 550, 1580
AoxI GGCC 5 cut(s) 228, 554, 639, 1060, 1377
ApeKI GCWGC 7 cut(s) 58, 656, 1094, 1124, 1154, 1483, 1571
ApoI RAATTY 4 cut(s) 492, 796, 865, 1606
AspLEI GCGC 5 cut(s) 315, 344, 524, 544, 568
AspS9I GGNCC 5 cut(s) 229, 555, 639, 1060, 1185
AsuC2I CCSGG 5 cut(s) 475, 760, 1381, 1581, 1582
AsuHPI GGTGA 6 cut(s) 160, 198, 538, 817, 1161, 1330
AvaI CYCGRG 2 cut(s) 550, 1580
AvaII GGWCC 1 cut(s) 1185
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BauI CACGAG 1 cut(s) 1631
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 7 cut(s) 70, 643, 1081, 1111, 1166, 1470, 1558
BccI CCATC 2 cut(s) 211, 1429
BceAI ACGGC 3 cut(s) 243, 400, 1450
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcnI CCSGG 5 cut(s) 475, 760, 1381, 1581, 1582
BcoDI GTCTC 3 cut(s) 223, 283, 374
BfaI CTAG 2 cut(s) 777, 1182
BfmI CTRYAG 2 cut(s) 1125, 1545
BfuAI ACCTGC 1 cut(s) 347
Bme1390I CCNGG 5 cut(s) 475, 760, 1381, 1581, 1582
Bme18I GGWCC 1 cut(s) 1185
BmeT110I CYCGRG 2 cut(s) 550, 1580
BmgBI CACGTC 1 cut(s) 945
BmgT120I GGNCC 5 cut(s) 229, 555, 639, 1060, 1185
BmiI GGNNCC 1 cut(s) 1020
BmrFI CCNGG 5 cut(s) 475, 760, 1381, 1581, 1582
BpuEI CTTGAG 3 cut(s) 377, 885, 1049
BpuMI CCSGG 5 cut(s) 475, 760, 1381, 1581, 1582
BsaAI YACGTR 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 7 cut(s) 642, 949, 1176, 1188, 1380, 1579, 1580
BsaWI WCCGGW 1 cut(s) 913
BsaXI ACNNNNNCTCC 8 cut(s) 155, 185, 263, 293, 371, 401, 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 456, 1182
Bse118I RCCGGY 1 cut(s) 463
Bse3DI GCAATG 8 cut(s) 674, 832, 837, 897, 961, 1062, 1104, 1139
BseDI CCNNGG 7 cut(s) 642, 949, 1176, 1188, 1380, 1579, 1580
BseLI CCNNNNNNNGG 3 cut(s) 422, 456, 1182
BseMI GCAATG 8 cut(s) 674, 832, 837, 897, 961, 1062, 1104, 1139
BseXI GCAGC 7 cut(s) 70, 643, 1081, 1111, 1166, 1470, 1558
BsgI GTGCAG 2 cut(s) 1173, 1557
Bsh1236I CGCG 2 cut(s) 524, 644
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 5 cut(s) 230, 556, 641, 1062, 1379
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 2 cut(s) 550, 1580
BsiSI CCGG 6 cut(s) 464, 475, 759, 914, 1380, 1581
BslFI GGGAC 3 cut(s) 340, 742, 1397
BslI CCNNNNNNNGG 3 cut(s) 422, 456, 1182
BsmAI GTCTC 3 cut(s) 223, 283, 374
BsmBI CGTCTC 2 cut(s) 223, 283
BsmFI GGGAC 3 cut(s) 340, 742, 1397
BsnI GGCC 5 cut(s) 230, 556, 641, 1062, 1379
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 2 cut(s) 550, 1580
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 4 cut(s) 99, 234, 675, 1213
Bsp19I CCATGG 1 cut(s) 1188
BspANI GGCC 5 cut(s) 230, 556, 641, 1062, 1379
BspFNI CGCG 2 cut(s) 524, 644
BspLI GGNNCC 1 cut(s) 1020
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 2 cut(s) 683, 1208
BspTNI GGTCTC 1 cut(s) 374
BsrDI GCAATG 8 cut(s) 674, 832, 837, 897, 961, 1062, 1104, 1139
BsrFI RCCGGY 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 7 cut(s) 642, 949, 1176, 1188, 1380, 1579, 1580
BssMI GATC 4 cut(s) 99, 234, 675, 1213
BssNAI GTATAC 1 cut(s) 618
BssSI CACGAG 1 cut(s) 1631
BssT1I CCWWGG 3 cut(s) 949, 1176, 1188
Bst1107I GTATAC 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 1631
Bst4CI ACNGT 4 cut(s) 122, 622, 1200, 1532
Bst6I CTCTTC 2 cut(s) 194, 335
BstBAI YACGTR 1 cut(s) 1012
BstC8I GCNNGC 5 cut(s) 540, 654, 837, 1425, 1542
BstDEI CTNAG 1 cut(s) 931
BstDSI CCRYGG 2 cut(s) 642, 1188
BstENI CCTNNNNNAGG 1 cut(s) 1180
BstFNI CGCG 2 cut(s) 524, 644
BstHHI GCGC 5 cut(s) 315, 344, 524, 544, 568
BstKTI GATC 4 cut(s) 102, 237, 678, 1216
BstMAI GTCTC 3 cut(s) 223, 283, 374
BstMBI GATC 4 cut(s) 99, 234, 675, 1213
BstMCI CGRYCG 1 cut(s) 121
BstNSI RCATGY 2 cut(s) 692, 1152
BstSCI CCNGG 5 cut(s) 473, 758, 1379, 1579, 1580
BstSFI CTRYAG 2 cut(s) 1125, 1545
BstUI CGCG 2 cut(s) 524, 644
BstV1I GCAGC 7 cut(s) 70, 643, 1081, 1111, 1166, 1470, 1558
BstZ17I GTATAC 1 cut(s) 618
BsuRI GGCC 5 cut(s) 230, 556, 641, 1062, 1379
BtgI CCRYGG 2 cut(s) 642, 1188
BtrI CACGTC 1 cut(s) 945
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 2 cut(s) 1134, 1537
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 5 cut(s) 540, 654, 837, 1425, 1542
CfoI GCGC 5 cut(s) 315, 344, 524, 544, 568
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 5 cut(s) 229, 555, 639, 1060, 1185
Cfr42I CCGCGG 1 cut(s) 645
Cfr9I CCCGGG 1 cut(s) 1580
Csp6I GTAC 1 cut(s) 911
CviAII CATG 8 cut(s) 222, 283, 586, 689, 1149, 1189, 1367, 1487
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 1 cut(s) 931
DpnI GATC 4 cut(s) 101, 236, 677, 1215
DpnII GATC 4 cut(s) 99, 234, 675, 1213
DraI TTTAAA 1 cut(s) 1642
EaeI YGGCCR 1 cut(s) 1377
Eam1104I CTCTTC 2 cut(s) 194, 335
EarI CTCTTC 2 cut(s) 194, 335
EciI GGCGGA 6 cut(s) 58, 173, 257, 278, 397, 662
Eco130I CCWWGG 3 cut(s) 949, 1176, 1188
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 1185
Eco88I CYCGRG 2 cut(s) 550, 1580
EcoNI CCTNNNNNAGG 1 cut(s) 1180
EcoRI GAATTC 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 949, 1176, 1188
ErhI CCWWGG 3 cut(s) 949, 1176, 1188
Esp3I CGTCTC 2 cut(s) 223, 283
FaeI CATG 8 cut(s) 225, 286, 589, 692, 1152, 1192, 1370, 1490
FaqI GGGAC 3 cut(s) 340, 742, 1397
FatI CATG 8 cut(s) 221, 282, 585, 688, 1148, 1188, 1366, 1486
FauI CCCGC 4 cut(s) 60, 952, 1180, 1432
FblI GTMKAC 1 cut(s) 617
FspBI CTAG 2 cut(s) 777, 1182
GlaI GCGC 5 cut(s) 314, 343, 523, 543, 567
HaeIII GGCC 5 cut(s) 230, 556, 641, 1062, 1379
HapII CCGG 6 cut(s) 464, 475, 759, 914, 1380, 1581
HhaI GCGC 5 cut(s) 315, 344, 524, 544, 568
Hin1II CATG 8 cut(s) 225, 286, 589, 692, 1152, 1192, 1370, 1490
Hin6I GCGC 5 cut(s) 313, 342, 522, 542, 566
HinP1I GCGC 5 cut(s) 313, 342, 522, 542, 566
HinfI GANTC 2 cut(s) 811, 1226
HpaII CCGG 6 cut(s) 464, 475, 759, 914, 1380, 1581
HphI GGTGA 6 cut(s) 160, 198, 538, 817, 1161, 1330
Hpy166II GTNNAC 2 cut(s) 618, 1690
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 1 cut(s) 1631
Hpy8I GTNNAC 2 cut(s) 618, 1690
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 8 cut(s) 184, 310, 373, 472, 994, 1318, 1322, 1383
HpyCH4III ACNGT 4 cut(s) 122, 622, 1200, 1532
HpyCH4IV ACGT 3 cut(s) 213, 944, 1011
HpyF3I CTNAG 1 cut(s) 931
HpySE526I ACGT 3 cut(s) 213, 944, 1011
Hsp92II CATG 8 cut(s) 225, 286, 589, 692, 1152, 1192, 1370, 1490
HspAI GCGC 5 cut(s) 313, 342, 522, 542, 566
KspI CCGCGG 1 cut(s) 645
Kzo9I GATC 4 cut(s) 99, 234, 675, 1213
LmnI GCTCC 4 cut(s) 158, 291, 649, 664
Lsp1109I GCAGC 7 cut(s) 70, 643, 1081, 1111, 1166, 1470, 1558
MaeI CTAG 2 cut(s) 777, 1182
MaeII ACGT 3 cut(s) 213, 944, 1011
MaeIII GTNAC 2 cut(s) 697, 1628
MalI GATC 4 cut(s) 101, 236, 677, 1215
MboI GATC 4 cut(s) 99, 234, 675, 1213
MboII GAAGA 6 cut(s) 181, 322, 1091, 1309, 1333, 1615
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 8 cut(s) 492, 796, 865, 1209, 1430, 1451, 1606, 1723
MlyI GAGTC 1 cut(s) 820
MmeI TCCRAC 6 cut(s) 186, 720, 996, 1056, 1322, 1641
MseI TTAA 3 cut(s) 885, 1592, 1641
MslI CAYNNNNRTG 2 cut(s) 504, 687
MspA1I CMGCKG 2 cut(s) 644, 872
MspI CCGG 6 cut(s) 464, 475, 759, 914, 1380, 1581
MspR9I CCNGG 5 cut(s) 475, 760, 1381, 1581, 1582
MvnI CGCG 2 cut(s) 524, 644
NciI CCSGG 5 cut(s) 475, 760, 1381, 1581, 1582
NcoI CCATGG 1 cut(s) 1188
NdeII GATC 4 cut(s) 99, 234, 675, 1213
NlaIII CATG 8 cut(s) 225, 286, 589, 692, 1152, 1192, 1370, 1490
NlaIV GGNNCC 1 cut(s) 1020
NmeAIII GCCGAG 2 cut(s) 436, 1088
NmuCI GTSAC 1 cut(s) 1628
NspI RCATGY 2 cut(s) 692, 1152
PaeR7I CTCGAG 1 cut(s) 550
PciI ACATGT 1 cut(s) 1148
PfeI GAWTC 1 cut(s) 1226
PleI GAGTC 1 cut(s) 819
PpsI GAGTC 1 cut(s) 819
Ppu21I YACGTR 1 cut(s) 1012
PscI ACATGT 1 cut(s) 1148
PspN4I GGNNCC 1 cut(s) 1020
PspPI GGNCC 5 cut(s) 229, 555, 639, 1060, 1185
PspXI VCTCGAGB 1 cut(s) 550
PstI CTGCAG 1 cut(s) 1129
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
RseI CAYNNNNRTG 2 cut(s) 504, 687
SacII CCGCGG 1 cut(s) 645
SaqAI TTAA 3 cut(s) 885, 1592, 1641
Sau3AI GATC 4 cut(s) 99, 234, 675, 1213
Sau96I GGNCC 5 cut(s) 229, 555, 639, 1060, 1185
SchI GAGTC 1 cut(s) 820
ScrFI CCNGG 5 cut(s) 475, 760, 1381, 1581, 1582
SduI GDGCHC 1 cut(s) 486
SfcI CTRYAG 2 cut(s) 1125, 1545
Sfr274I CTCGAG 1 cut(s) 550
Sfr303I CCGCGG 1 cut(s) 645
SgrBI CCGCGG 1 cut(s) 645
SinI GGWCC 1 cut(s) 1185
SlaI CTCGAG 1 cut(s) 550
SmaI CCCGGG 1 cut(s) 1582
SmiMI CAYNNNNRTG 2 cut(s) 504, 687
SmlI CTYRAG 4 cut(s) 392, 550, 900, 1028
SmoI CTYRAG 4 cut(s) 392, 550, 900, 1028
Sse9I AATT 8 cut(s) 492, 796, 865, 1209, 1430, 1451, 1606, 1723
SspI AATATT 1 cut(s) 1646
SspMI CTAG 2 cut(s) 777, 1182
StyD4I CCNGG 5 cut(s) 473, 758, 1379, 1579, 1580
StyI CCWWGG 3 cut(s) 949, 1176, 1188
TaaI ACNGT 4 cut(s) 122, 622, 1200, 1532
TaiI ACGT 3 cut(s) 216, 947, 1014
TaqI TCGA 5 cut(s) 42, 486, 551, 608, 789
TaqII GACCGA 1 cut(s) 356
TasI AATT 8 cut(s) 492, 796, 865, 1209, 1430, 1451, 1606, 1723
TauI GCSGC 5 cut(s) 58, 263, 644, 647, 842
TfiI GAWTC 1 cut(s) 1226
Tru1I TTAA 3 cut(s) 885, 1592, 1641
Tru9I TTAA 3 cut(s) 885, 1592, 1641
TscAI CASTG 2 cut(s) 1134, 1537
TseFI GTSAC 1 cut(s) 1628
TseI GCWGC 7 cut(s) 58, 656, 1094, 1124, 1154, 1483, 1571
Tsp45I GTSAC 1 cut(s) 1628
TspDTI ATGAA 7 cut(s) 504, 602, 933, 1013, 1293, 1319, 1355
TspGWI ACGGA 1 cut(s) 992
TspMI CCCGGG 1 cut(s) 1580
TspRI CASTG 2 cut(s) 1134, 1537
VpaK11BI GGWCC 1 cut(s) 1185
XagI CCTNNNNNAGG 1 cut(s) 1180
XapI RAATTY 4 cut(s) 492, 796, 865, 1606
XceI RCATGY 2 cut(s) 692, 1152
XhoI CTCGAG 1 cut(s) 550
XmaI CCCGGG 1 cut(s) 1580
XmiI GTMKAC 1 cut(s) 617
XspI CTAG 2 cut(s) 777, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.