Rroxscaffold_1G00045930

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008363
Physical Location & Seq
Reverse (-)
65081667 .. 65084860
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045930.1

Sequence Viewer

Length: 1056 bp
ATGCAGGTTGCTGCCAAGGTCATAGGAGAAGCTCAAGCGCTCATAATATTTCCAATAATTCCATATACCATCCTTGGAGTTTTTTACATGATCTGGTTGTCAGCTGCTTTTCACCTGTTCAGTTCTGGTCAAGTAGTCCAGAATAGCTGCAACTCGAACTGCTGTGCCTATGATCTGGCATCAAAACAAGTTCAGTGTGATCGTTGTTGCGGTTATAGCATTCATTACACTCCTCATATTGGACTTGCTATCTTTTTCCACCTATTTGGGTGTTATTGGGCTACACAGTTTTTCAAAGCAGCCTCTTCAACTGTTATTGCTGGTTCTGTGGCCTCTTACTATTGGGCTCGTGGTGAAACATCAGGTGAAATACCATTTCTTCCGGTCTTTTCCTCTATGAAACGGCTGATGCGCTATAGCCTCGGGTCGGTGGCTCTTGGCTCCCTGATTGTGTCATTTGTGGAATCAATAAGGTTTATGCTCGAGTCCATTCGTCGCCGATTAAAAGTTTCTGGTACCACGCCTAATAACTGGTTCGGAAAGGCTGCATTCTCTACTGCTAGGTTTTGCCTGAGGTGTATTGAGTGGACAATCAAGTCGGTTAATCGCAATGCCTACATTATGATTGCTATAACAGGTAAAAGCTTCTGCAAGTCTTCTGCAGTTGCTACAGATCTGATCATCAGTAACATCCTTCGGATAGGGAGGGTGAACGTGATTGGAGATGTGATACTATTCCTTGGCAAATTGTGTGTCAGCCTATCAACTGCCCTTTTTGCTTTTCTTATGTTGGATACCCACAGATACAAATCTGCGCATAACAAGATCTCTTCTCCACTGTTTCCAGTGTTGGTTTGCTGGGCCCTTGGTTATGTGGTTGCTACACTTTTCTTTGCTGTGGTGGAGATGTCAATCGATACAATCATTCTTTCATTCTGCCAGGATTCCGAAGAGCACCAAGGGACTGCGCAGTATGCGCCTCCACTTCTCATCGAAACTCTAAATGACGAAAATGAGATGCAGAGACTTACCCAAGGATCCAATGATATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0000325 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0005215 GO:0005326 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006836 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009524 GO:0009551 GO:0009663 GO:0009705 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010008 GO:0010051 GO:0010065 GO:0010067 GO:0010087 GO:0010088 GO:0010154 GO:0010496 GO:0010497 GO:0010817 GO:0012505 GO:0015031 GO:0015075 GO:0015101 GO:0015220 GO:0015695 GO:0015696 GO:0015833 GO:0015871 GO:0016020 GO:0016043 GO:0016192 GO:0022414 GO:0022603 GO:0022604 GO:0022622 GO:0022857 GO:0030054 GO:0030100 GO:0030154 GO:0030312 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0033036 GO:0034220 GO:0034330 GO:0040008 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044426 GO:0044431 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044462 GO:0044464 GO:0045184 GO:0045216 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0055044 GO:0055085 GO:0055088 GO:0060627 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0090603 GO:0097218 GO:0097708 GO:0098588 GO:0098655 GO:0098791 GO:0098805 GO:0099402 GO:2000012
KEGG Pathways
Metabolic & Signaling
ko05231 map05231
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

351

Amino Acids

38.96

Weight (kDa)

8.64

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 2 - 317 1.4e-84 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 595
Acc16I TGCGCA 2 cut(s) 816, 969
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AciI CCGC 1 cut(s) 210
AclWI GGATC 2 cut(s) 1032, 1045
AfaI GTAC 1 cut(s) 517
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 239, 427
AgsI TTSAA 2 cut(s) 295, 309
AjnI CCWGG 1 cut(s) 939
AluBI AGCT 4 cut(s) 32, 104, 147, 645
AluI AGCT 4 cut(s) 32, 104, 147, 645
Alw21I GWGCWC 1 cut(s) 957
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 2 cut(s) 1032, 1045
Ama87I CYCGRG 2 cut(s) 422, 482
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 2 cut(s) 330, 861
ApaI GGGCCC 1 cut(s) 865
ApeKI GCWGC 5 cut(s) 11, 104, 147, 299, 545
ArsI GACNNNNNNTTYG 2 cut(s) 738, 770
Asp718I GGTACC 1 cut(s) 515
AspLEI GCGC 5 cut(s) 40, 414, 817, 970, 979
AspS9I GGNCC 2 cut(s) 861, 862
AsuHPI GGTGA 4 cut(s) 104, 365, 377, 721
AvaI CYCGRG 2 cut(s) 422, 482
AxyI CCTNAGG 1 cut(s) 572
BaeGI GKGCMC 1 cut(s) 865
BamHI GGATCC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 2 cut(s) 349, 865
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 957
BbvI GCAGC 4 cut(s) 91, 134, 311, 532
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 941
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 3 cut(s) 415, 660, 669
BfoI RGCGCY 1 cut(s) 41
BfuI GTATCC 1 cut(s) 787
BglII AGATCT 2 cut(s) 673, 825
BisI GCNGC 5 cut(s) 12, 105, 148, 300, 546
BlsI GCNGC 5 cut(s) 13, 106, 149, 301, 547
Bme1390I CCNGG 1 cut(s) 941
BmeT110I CYCGRG 2 cut(s) 422, 482
BmgT120I GGNCC 2 cut(s) 861, 862
BmiI GGNNCC 4 cut(s) 442, 517, 863, 1039
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 188, 399, 1008
BpiI GAAGAC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 915
BsaBI GATNNNNATC 2 cut(s) 808, 911
BsaJI CCNNGG 7 cut(s) 15, 73, 421, 739, 865, 958, 1033
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 427
Bse1I ACTGG 2 cut(s) 536, 845
Bse21I CCTNAGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 2 cut(s) 808, 911
BseBI CCWGG 1 cut(s) 941
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 7 cut(s) 15, 73, 421, 739, 865, 958, 1033
BseGI GGATG 2 cut(s) 69, 690
BseJI GATNNNNATC 2 cut(s) 808, 911
BseLI CCNNNNNNNGG 2 cut(s) 239, 427
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 536, 845
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 4 cut(s) 91, 134, 311, 532
BseYI CCCAGC 1 cut(s) 858
BshFI GGCC 2 cut(s) 332, 863
BshNI GGYRCC 1 cut(s) 515
BshVI ATCGAT 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 957
BsiHKCI CYCGRG 2 cut(s) 422, 482
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 2 cut(s) 239, 427
BsmAI GTCTC 1 cut(s) 1018
BsmFI GGGAC 1 cut(s) 976
BsmI GAATGC 2 cut(s) 219, 548
BsnI GGCC 2 cut(s) 332, 863
BsoBI CYCGRG 2 cut(s) 422, 482
Bsp120I GGGCCC 1 cut(s) 861
Bsp1286I GDGCHC 3 cut(s) 349, 865, 957
Bsp143I GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 332, 863
BspCNI CTCAG 1 cut(s) 564
BspDI ATCGAT 1 cut(s) 915
BspLI GGNNCC 4 cut(s) 442, 517, 863, 1039
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 2 cut(s) 1032, 1045
BspQI GCTCTTC 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 2 cut(s) 536, 845
BssECI CCNNGG 7 cut(s) 15, 73, 421, 739, 865, 958, 1033
BssMI GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 6 cut(s) 15, 73, 739, 865, 958, 1033
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 3 cut(s) 288, 313, 840
Bst6I CTCTTC 3 cut(s) 310, 835, 945
BstDEI CTNAG 2 cut(s) 572, 1053
BstF5I GGATG 2 cut(s) 69, 690
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 5 cut(s) 40, 414, 817, 970, 979
BstKTI GATC 7 cut(s) 93, 175, 202, 676, 681, 828, 1040
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
BstMWI GCNNNNNNNGC 4 cut(s) 216, 776, 974, 976
BstNI CCWGG 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 3 cut(s) 415, 660, 669
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 4 cut(s) 91, 134, 311, 532
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 673, 825, 1037
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 3 cut(s) 673, 825, 1037
Bsu15I ATCGAT 1 cut(s) 915
Bsu36I CCTNAGG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 332, 863
BsuTUI ATCGAT 1 cut(s) 915
BtsCI GGATG 2 cut(s) 69, 690
BtsIMutI CAGTG 3 cut(s) 200, 836, 852
CfoI GCGC 5 cut(s) 40, 414, 817, 970, 979
Cfr13I GGNCC 2 cut(s) 861, 862
ClaI ATCGAT 1 cut(s) 915
Csp6I GTAC 1 cut(s) 516
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 2 cut(s) 572, 1053
DpnI GATC 7 cut(s) 92, 174, 201, 675, 680, 827, 1039
DpnII GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
Eam1104I CTCTTC 3 cut(s) 310, 835, 945
EarI CTCTTC 3 cut(s) 310, 835, 945
Eco130I CCWWGG 6 cut(s) 15, 73, 739, 865, 958, 1033
Eco24I GRGCYC 2 cut(s) 349, 865
Eco47III AGCGCT 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 572
Eco88I CYCGRG 2 cut(s) 422, 482
EcoO109I RGGNCCY 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 6 cut(s) 15, 73, 739, 865, 958, 1033
EcoT38I GRGCYC 2 cut(s) 349, 865
ErhI CCWWGG 6 cut(s) 15, 73, 739, 865, 958, 1033
FaeI CATG 1 cut(s) 91
FaqI GGGAC 1 cut(s) 976
FatI CATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 12, 105, 148, 300, 546
FokI GGATG 2 cut(s) 56, 677
FriOI GRGCYC 2 cut(s) 349, 865
Fsp4HI GCNGC 5 cut(s) 12, 105, 148, 300, 546
FspBI CTAG 1 cut(s) 561
FspI TGCGCA 2 cut(s) 816, 969
GlaI GCGC 5 cut(s) 39, 413, 816, 969, 978
GluI GCNGC 5 cut(s) 12, 105, 148, 300, 546
GsaI CCCAGC 1 cut(s) 862
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 2 cut(s) 332, 863
HapII CCGG 1 cut(s) 383
HhaI GCGC 5 cut(s) 40, 414, 817, 970, 979
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 5 cut(s) 38, 412, 815, 968, 977
HinP1I GCGC 5 cut(s) 38, 412, 815, 968, 977
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 3 cut(s) 464, 485, 944
HpaII CCGG 1 cut(s) 383
HphI GGTGA 4 cut(s) 104, 365, 377, 721
Hpy166II GTNNAC 2 cut(s) 588, 712
Hpy188I TCNGA 4 cut(s) 539, 678, 699, 949
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 588, 712
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 3 cut(s) 288, 313, 840
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 4, 150, 548, 651, 662, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 776, 974, 976
HpyF3I CTNAG 2 cut(s) 572, 1053
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 5 cut(s) 38, 412, 815, 968, 977
KpnI GGTACC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 4 cut(s) 91, 134, 311, 532
LweI GCATC 3 cut(s) 188, 399, 1008
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 686
MalI GATC 7 cut(s) 92, 174, 201, 675, 680, 827, 1039
MboI GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
MboII GAAGA 5 cut(s) 297, 371, 648, 822, 962
MflI RGATCY 3 cut(s) 673, 825, 1037
MhlI GDGCHC 3 cut(s) 349, 865, 957
MluCI AATT 2 cut(s) 57, 746
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 8 cut(s) 243, 313, 343, 403, 431, 567, 699, 990
MseI TTAA 2 cut(s) 503, 603
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 941
Mva1269I GAATGC 2 cut(s) 219, 548
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 4 cut(s) 216, 776, 974, 976
NdeII GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 4 cut(s) 442, 517, 863, 1039
NsbI TGCGCA 2 cut(s) 816, 969
PaeR7I CTCGAG 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 945
PctI GAATGC 2 cut(s) 219, 548
PfeI GAWTC 2 cut(s) 464, 944
PkrI GCNGC 5 cut(s) 13, 106, 149, 301, 547
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 939
PspFI CCCAGC 1 cut(s) 858
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 4 cut(s) 442, 517, 863, 1039
PspOMI GGGCCC 1 cut(s) 861
PspPI GGNCC 2 cut(s) 861, 862
PspXI VCTCGAGB 1 cut(s) 482
PstI CTGCAG 1 cut(s) 664
PsuI RGATCY 3 cut(s) 673, 825, 1037
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 2 cut(s) 503, 603
SatI GCNGC 5 cut(s) 12, 105, 148, 300, 546
Sau3AI GATC 7 cut(s) 90, 172, 199, 673, 678, 825, 1037
Sau96I GGNCC 2 cut(s) 861, 862
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 3 cut(s) 349, 865, 957
SfaNI GCATC 3 cut(s) 188, 399, 1008
SfcI CTRYAG 3 cut(s) 415, 660, 669
Sfr274I CTCGAG 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 33, 482
SmoI CTYRAG 2 cut(s) 33, 482
Sse9I AATT 2 cut(s) 57, 746
SsiI CCGC 1 cut(s) 210
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 6 cut(s) 15, 73, 739, 865, 958, 1033
TaaI ACNGT 3 cut(s) 288, 313, 840
TaiI ACGT 1 cut(s) 717
TaqI TCGA 4 cut(s) 155, 483, 915, 993
TasI AATT 2 cut(s) 57, 746
TfiI GAWTC 2 cut(s) 464, 944
Tru1I TTAA 2 cut(s) 503, 603
Tru9I TTAA 2 cut(s) 503, 603
TscAI CASTG 3 cut(s) 200, 843, 852
TseI GCWGC 5 cut(s) 11, 104, 147, 299, 545
TspDTI ATGAA 3 cut(s) 212, 413, 921
TspRI CASTG 3 cut(s) 200, 843, 852
XhoI CTCGAG 1 cut(s) 482
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.