Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008363

Physical Location & Seq

Genomic Coordinates Reverse (-)

13471113 .. 13471511

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATATGGAGGCAATTCTTGATGAAGAAGTAATCCCAACTCTTGAATTTTCTAGTGAGTTTTTAGCCTCAAAGCAAGGGAGTGGGGAATGGAAAGCTATGAGGAACAAAGTGAGAGAGGCATGTCAGAGTTATGGTTGCTTTCTGCTGTTGGTGCGGGAAGAGACAAACCCCATCAACTTACGTGAAGAAATGGTGTTGGCCATGAAGGGTTTGTTCGATCTCCCTGAAGAGACCAAGCAGAAGCACAAAAATACGAACTCTTTCCATGACTACCAAGGCAAATCCCCCAACGTTCCATTGAGCGAAAGCTTTGGAATTGATAGTTCAGACCAGATTGATGCAGCTCAAGCCTTCACCAACCTCATGTGGCCTCAAGGGAACCCTGCGTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000325 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0005215 GO:0005326 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006836 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009524 GO:0009551 GO:0009663 GO:0009705 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010008 GO:0010051 GO:0010065 GO:0010067 GO:0010087 GO:0010088 GO:0010154 GO:0010496 GO:0010497 GO:0010817 GO:0012505 GO:0015031 GO:0015075 GO:0015101 GO:0015220 GO:0015695 GO:0015696 GO:0015833 GO:0015871 GO:0016020 GO:0016043 GO:0016192 GO:0022414 GO:0022603 GO:0022604 GO:0022622 GO:0022857 GO:0030054 GO:0030100 GO:0030154 GO:0030312 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0033036 GO:0034220 GO:0034330 GO:0040008 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044426 GO:0044431 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044462 GO:0044464 GO:0045184 GO:0045216 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0055044 GO:0055085 GO:0055088 GO:0060627 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0090603 GO:0097218 GO:0097708 GO:0098588 GO:0098655 GO:0098791 GO:0098805 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

132

Amino Acids

15.02

Weight (kDa)

4.63

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 125	1.6e-11	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15380
fragaria_vesca	FvH4_3g20420 FvH4_3g20420 FvH4_3g20420
malus_domestica	MD03G1225500.v1.1 MD11G1246200.v1.1
prunus_persica	Prupe.4G183900_v2.0.a1 Prupe.4G183900_v2.0.a1
pyrus_communis	pycom03g17340 pycom11g21830
rosa_chinensis	RchiOBHm_Chr5g0034311
rosa_laevigata	RLG00000033539
rosa_multiflora	Rmu_sc0000062.1_g000020
rosa_roxburghii	Rroxscaffold_1G00045930 Rroxscaffold_1G00045960
rosa_rugosa	Rorug05G0145200
rosa_samantha	Rh5AG236800 Rh5BG237300 Rh5CG267100 Rh5DG244800
rosa_wichuraiana	Rw0G022200 Rw5G021280 Rw5G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclI	AACGTT	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	3 cut(s)	98, 312, 347
AluI	AGCT	3 cut(s)	98, 312, 347
Alw26I	GTCTC	2 cut(s)	158, 227
AoxI	GGCC	2 cut(s)	201, 371
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	158, 227
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	383
BmsI	GCATC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	333, 360
BsaAI	YACGTR	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	203, 373
BsmAI	GTCTC	2 cut(s)	158, 227
BsnI	GGCC	2 cut(s)	203, 373
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	203, 373
BspLI	GGNNCC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	156, 225
BstBAI	YACGTR	1 cut(s)	185
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	158, 227
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 350
BstNSI	RCATGY	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	203, 373
CviAII	CATG	4 cut(s)	123, 205, 269, 367
CviJI	RGCY	7 cut(s)	68, 98, 203, 312, 347, 353, 373
CviKI_1	RGCY	7 cut(s)	68, 98, 203, 312, 347, 353, 373
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	156, 225
EarI	CTCTTC	2 cut(s)	156, 225
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	4 cut(s)	126, 208, 272, 370
FaiI	YATR	7 cut(s)	8, 101, 124, 135, 206, 270, 368
FatI	CATG	4 cut(s)	122, 204, 268, 366
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	203, 373
Hin1II	CATG	4 cut(s)	126, 208, 272, 370
HindIII	AAGCTT	1 cut(s)	310
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	129, 331
Hpy188III	TCNNGA	2 cut(s)	20, 44
HpyAV	CCTTC	2 cut(s)	202, 364
HpyCH4IV	ACGT	2 cut(s)	184, 294
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 350
HpySE526I	ACGT	2 cut(s)	184, 294
Hsp92II	CATG	4 cut(s)	126, 208, 272, 370
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	240, 347
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	2 cut(s)	184, 294
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	4 cut(s)	38, 173, 200, 242
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	3 cut(s)	15, 47, 318
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	6 cut(s)	4, 79, 96, 112, 374, 384
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	154, 350
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	126, 208, 272, 370
NlaIV	GGNNCC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	383
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	220
SetI	ASST	6 cut(s)	100, 187, 297, 314, 349, 366
SfaNI	GCATC	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	348, 375
SmoI	CTYRAG	2 cut(s)	348, 375
Sse9I	AATT	3 cut(s)	15, 47, 318
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	2 cut(s)	187, 297
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	15, 47, 318
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	39, 221
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.