Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009809

Physical Location & Seq

Genomic Coordinates Reverse (-)

71105553 .. 71108683

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGCTTCATATACGCCCAAAAACATCCTCATAACTGGGGCTGCTGGCTTCATTGCTTCCCATGTGGCCAACCGGCTCGTTCGCAGTCACCCTGAATACAATATCGTTGTGCTTGACAAGCTTGACTATTGTTCGAATCTGAAAAACCTCCTGCCCTCTAAGTCGTCATCCAATTTCAAATTTGTTAAGGGGGACATAGGAAGTGCTGACCTTGTCAACTATCTCCTCATCACTGAGTCAATAGATACAATAATGCATTTTGCAGCCCAGACCCATGTCGACAACTCTTTTGGCAACAGCTTTGAGTTCACAAAGAACAACATCTATGGCACCCATGTTCTTCTAGAAGCATGTAAAGTCACAGGCCAAATCAGGAGGTTCATCCATGTTAGCACAGATGAGGTTTATGGTGAGACTGATGAAGATGCTGTTAGGTACTTCCTTGATGATCAGAAGTTGACGGTGTTGGGGTGGTCAGAGCGGACTACCTGGGAAGAGGGGCTGAAGAAGACTATAGAATGGTATACTAAGAATCCTAACTGGTGGGGTGATGTATCTGGGGCACTGCTTCCTCATCCACGAATGTTGATGATGCCTGGTGGAATTGAGAGACATTTTGATGAGCCTGAAGAGGAAAAATCTGAGTCTTATGTCTCAAGTAATCCTCGAATGTTGGTTCCCCCTTCCAAATGCTGTGGCTCTCCTCGTAAACCTCCTTATAAGTTCTTGATCTATGGTAAGACTGGGTGGATTGGTGGTGTACTTGGGAAGCTCTGTGAAAAACAAGGGATTCCTTATGAATATGGAAAAGGGCGTCTTGAGGATCGGTCTTCACTTGCTGCAGATGTTCAGAATATTAAGCCAACTCATGTGTTTAATGCTGCTGGTGTGACTGGTAGACCTAATGTTGATTGGTGTGAATCTCATAAAGCAGAAACAATTCGAACCAATGTTGCTGGAACCCTAACCCTAGCAGATGTTTGCAGAGAGCATGGGCTCCTTATGGTCAATTTTGCGACTGGGTGTATATTTGAGTATGATGCTAAACATCCAGAGGGTTCAGGGATTGGGTTCACTGAAGAAGACAAACCCAATTTCTTTGGTTCTTTCTATTCAAAAACCAAGGCCATGGTTGAGGAGCTATTGAATGAATTCGACAATGTTTGCACTCTTAGAGTTCGAATGCCCATCTCATCAGACCTGAACAACCCACGTAACTTCATCACCAAGATTTCTCGTTATAACAAAGTGGTCAACATTCCTAACAGCGTGACCATCTTGGATGAACTACTACCTATTTCAATTGAGATGGCAAAGCGGAACTTGAGGGGTATCTGGAACTTCACAAATCCTGGGGTCGTGAGCCATAATGAGGTTCTGGAAATGTACAAGCAATACATTGACCCAAGTTTCAAATGGGCGAACTTCACAATTGAAGAGCAAGCCAAGGTTATAGTTGCCGCCCGAAGCAACAATGAAATGGATGCATCCAAGTTGAAGAAAGAGTTCCCCGAGTTGCTACCAATCAAGGAGTCGCTGATAAACAACAAGCTCTGCTCTGCCTTTTCTTTTGTTCAGGACCGAAGTGTAAGCGATGCCTTCATGCAATTCACCATGGTTTGGACTGCAATTTCTGAAGTCTACAGCTGCAGTTTCGCCGCCGAGCACTACAGTCAGTTCTTCGGTGGCTTCAGGTCGGGTGGGACAAGATTTGGTCATGGACTCGAGCATCTAACTAGCAGACTCCCTACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

585

Amino Acids

65.9

Weight (kDa)

6.27

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	8 - 150	1.7e-07	RmlD substrate binding domain
Epimerase	PF01370	9 - 141	4.6e-25	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	9 - 134	1.1e-14	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	10 - 142	2.2e-32	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	10 - 139	2.3e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	11 - 144	8.6e-12	Male sterility protein
RmlD_sub_bind	PF04321	241 - 411	3.2e-14	RmlD substrate binding domain
Epimerase	PF01370	244 - 394	2.1e-11	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78570
fragaria_vesca	FvH4_3g17640 FvH4_3g17640 FvH4_3g17640
malus_domestica	MD03G1250400.v1.1 MD11G1270500.v1.1
prunus_persica	Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1
pyrus_communis	pycom11g23940
rosa_chinensis	RchiOBHm_Chr5g0029371
rosa_laevigata	RLG00000033159
rosa_multiflora	Rmu_sc0004373.1_g000022
rosa_roxburghii	Rroxscaffold_1G00050590
rosa_rugosa	Rorug05G0113800 Rorug05G0113900
rosa_samantha	Rh5AG205700 Rh5BG204100 Rh5CG226000 Rh5DG207700
rosa_wichuraiana	Rw5G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	720, 1242
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	1620
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	4 cut(s)	279, 524, 898, 1641
AciI	CCGC	4 cut(s)	481, 1318, 1461, 1659
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	179, 1151
AcuI	CTGAAG	5 cut(s)	524, 648, 1098, 1656, 1675
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	3 cut(s)	437, 762, 1388
AfiI	CCNNNNNNNGG	2 cut(s)	1372, 1620
AgsI	TTSAA	7 cut(s)	178, 1116, 1147, 1302, 1414, 1436, 1498
AjnI	CCWGG	3 cut(s)	488, 595, 1351
AluBI	AGCT	6 cut(s)	121, 300, 772, 1141, 1552, 1647
AluI	AGCT	6 cut(s)	121, 300, 772, 1141, 1552, 1647
Alw21I	GWGCWC	1 cut(s)	1668
Alw26I	GTCTC	3 cut(s)	407, 604, 658
AlwI	GGATC	1 cut(s)	831
Ama87I	CYCGRG	2 cut(s)	1511, 1724
AoxI	GGCC	3 cut(s)	66, 364, 1125
ApeKI	GCWGC	5 cut(s)	41, 263, 839, 881, 1647
ApoI	RAATTY	2 cut(s)	179, 1151
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	3 cut(s)	939, 1151, 1505
AspS9I	GGNCC	1 cut(s)	1579
AsuHPI	GGTGA	5 cut(s)	80, 422, 560, 1216, 1603
AsuII	TTCGAA	3 cut(s)	134, 943, 1180
AvaI	CYCGRG	2 cut(s)	1511, 1724
AvaII	GGWCC	1 cut(s)	1579
BaeGI	GKGCMC	1 cut(s)	565
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	999
BbsI	GAAGAC	3 cut(s)	515, 822, 1089
Bbv12I	GWGCWC	1 cut(s)	1668
BbvI	GCAGC	5 cut(s)	28, 275, 826, 868, 1634
BccI	CCATC	3 cut(s)	1196, 1283, 1303
BciT130I	CCWGG	3 cut(s)	490, 597, 1353
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	3 cut(s)	407, 604, 658
BfaI	CTAG	3 cut(s)	344, 971, 1737
BfmI	CTRYAG	5 cut(s)	513, 840, 1642, 1648, 1669
BisI	GCNGC	7 cut(s)	42, 264, 840, 882, 1461, 1648, 1659
BlsI	GCNGC	7 cut(s)	43, 265, 841, 883, 1462, 1649, 1660
Bme1390I	CCNGG	3 cut(s)	490, 597, 1353
Bme18I	GGWCC	1 cut(s)	1579
BmeT110I	CYCGRG	2 cut(s)	1511, 1724
BmgT120I	GGNCC	1 cut(s)	1579
BmiI	GGNNCC	4 cut(s)	331, 678, 961, 998
BmrFI	CCNGG	3 cut(s)	490, 597, 1353
BmrI	ACTGGG	3 cut(s)	45, 753, 1029
BmsI	GCATC	7 cut(s)	415, 582, 1030, 1474, 1496, 1585, 1738
BmuI	ACTGGG	3 cut(s)	45, 753, 1029
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	3 cut(s)	515, 822, 1089
Bpu14I	TTCGAA	3 cut(s)	134, 943, 1180
BpuEI	CTTGAG	3 cut(s)	640, 839, 1345
BsaAI	YACGTR	1 cut(s)	1214
BsaHI	GRCGYC	1 cut(s)	814
BsaJI	CCNNGG	6 cut(s)	489, 1122, 1128, 1352, 1446, 1614
Bsc4I	CCNNNNNNNGG	2 cut(s)	1372, 1620
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	6 cut(s)	40, 545, 748, 898, 1024, 1756
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	490, 597, 1353
BseDI	CCNNGG	6 cut(s)	489, 1122, 1128, 1352, 1446, 1614
BseGI	GGATG	8 cut(s)	24, 167, 381, 574, 1048, 1288, 1487, 1489
BseLI	CCNNNNNNNGG	2 cut(s)	1372, 1620
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	225, 633
BseNI	ACTGG	6 cut(s)	40, 545, 748, 898, 1024, 1756
BseRI	GAGGAG	3 cut(s)	215, 693, 1151
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	5 cut(s)	28, 275, 826, 868, 1634
BshFI	GGCC	3 cut(s)	68, 366, 1127
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	1668
BsiHKCI	CYCGRG	2 cut(s)	1511, 1724
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	206, 1717
BslI	CCNNNNNNNGG	2 cut(s)	1372, 1620
BsmAI	GTCTC	3 cut(s)	407, 604, 658
BsmFI	GGGAC	2 cut(s)	206, 1717
BsmI	GAATGC	1 cut(s)	1188
BsnI	GGCC	3 cut(s)	68, 366, 1127
BsoBI	CYCGRG	2 cut(s)	1511, 1724
Bsp119I	TTCGAA	3 cut(s)	134, 943, 1180
Bsp1286I	GDGCHC	3 cut(s)	565, 999, 1668
Bsp1407I	TGTACA	1 cut(s)	1386
Bsp143I	GATC	3 cut(s)	448, 729, 823
Bsp19I	CCATGG	2 cut(s)	1128, 1614
BspACI	CCGC	4 cut(s)	481, 1318, 1461, 1659
BspANI	GGCC	3 cut(s)	68, 366, 1127
BspCNI	CTCAG	2 cut(s)	226, 634
BspLI	GGNNCC	4 cut(s)	331, 678, 961, 998
BspMAI	CTGCAG	2 cut(s)	844, 1652
BspPI	GGATC	1 cut(s)	831
BspQI	GCTCTTC	1 cut(s)	1431
BspT104I	TTCGAA	3 cut(s)	134, 943, 1180
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	1386
BsrI	ACTGG	6 cut(s)	40, 545, 748, 898, 1024, 1756
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	6 cut(s)	489, 1122, 1128, 1352, 1446, 1614
BssMI	GATC	3 cut(s)	448, 729, 823
BssNAI	GTATAC	1 cut(s)	525
BssNI	GRCGYC	1 cut(s)	814
BssT1I	CCWWGG	4 cut(s)	1122, 1128, 1446, 1614
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	490, 597, 1353
Bst4CI	ACNGT	2 cut(s)	463, 1673
Bst6I	CTCTTC	3 cut(s)	489, 624, 1431
BstACI	GRCGYC	1 cut(s)	814
BstAUI	TGTACA	1 cut(s)	1386
BstBAI	YACGTR	1 cut(s)	1214
BstBI	TTCGAA	3 cut(s)	134, 943, 1180
BstC8I	GCNNGC	2 cut(s)	46, 1443
BstDEI	CTNAG	5 cut(s)	159, 234, 528, 642, 1172
BstDSI	CCRYGG	2 cut(s)	1128, 1614
BstF5I	GGATG	8 cut(s)	24, 167, 381, 574, 1048, 1288, 1487, 1489
BstKTI	GATC	3 cut(s)	451, 732, 826
BstMAI	GTCTC	3 cut(s)	407, 604, 658
BstMBI	GATC	3 cut(s)	448, 729, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	3 cut(s)	490, 597, 1353
BstNSI	RCATGY	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	488, 595, 1351
BstSFI	CTRYAG	5 cut(s)	513, 840, 1642, 1648, 1669
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	5 cut(s)	28, 275, 826, 868, 1634
BstV2I	GAAGAC	3 cut(s)	515, 822, 1089
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstZ17I	GTATAC	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	68, 366, 1127
BtgI	CCRYGG	2 cut(s)	1128, 1614
BtgZI	GCGATG	1 cut(s)	1608
BtsCI	GGATG	8 cut(s)	24, 167, 381, 574, 1048, 1288, 1487, 1489
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	3 cut(s)	231, 563, 1074
Cac8I	GCNNGC	2 cut(s)	46, 1443
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	1579
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	436, 761, 1387
CspCI	CAANNNNNGTGG	4 cut(s)	567, 602, 676, 711
CviQI	GTAC	3 cut(s)	436, 761, 1387
DdeI	CTNAG	5 cut(s)	159, 234, 528, 642, 1172
DpnI	GATC	3 cut(s)	450, 731, 825
DpnII	GATC	3 cut(s)	448, 729, 823
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	489, 624, 1431
EarI	CTCTTC	3 cut(s)	489, 624, 1431
Eco130I	CCWWGG	4 cut(s)	1122, 1128, 1446, 1614
Eco24I	GRGCYC	1 cut(s)	999
Eco47I	GGWCC	1 cut(s)	1579
Eco57I	CTGAAG	5 cut(s)	524, 648, 1098, 1656, 1675
Eco88I	CYCGRG	2 cut(s)	1511, 1724
EcoRI	GAATTC	1 cut(s)	1151
EcoRII	CCWGG	3 cut(s)	488, 595, 1351
EcoT14I	CCWWGG	4 cut(s)	1122, 1128, 1446, 1614
EcoT22I	ATGCAT	2 cut(s)	258, 1489
EcoT38I	GRGCYC	1 cut(s)	999
ErhI	CCWWGG	4 cut(s)	1122, 1128, 1446, 1614
FalI	AAGNNNNNCTT	4 cut(s)	801, 833, 1307, 1339
FaqI	GGGAC	2 cut(s)	206, 1717
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	4 cut(s)	279, 524, 898, 1641
Fnu4HI	GCNGC	7 cut(s)	42, 264, 840, 882, 1461, 1648, 1659
FokI	GGATG	8 cut(s)	11, 154, 368, 561, 1035, 1295, 1474, 1496
FriOI	GRGCYC	1 cut(s)	999
Fsp4HI	GCNGC	7 cut(s)	42, 264, 840, 882, 1461, 1648, 1659
FspBI	CTAG	3 cut(s)	344, 971, 1737
GluI	GCNGC	7 cut(s)	42, 264, 840, 882, 1461, 1648, 1659
HaeIII	GGCC	3 cut(s)	68, 366, 1127
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	803
Hin1I	GRCGYC	1 cut(s)	814
HincII	GTYRAC	4 cut(s)	217, 280, 459, 1255
HindII	GTYRAC	4 cut(s)	217, 280, 459, 1255
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	9 cut(s)	136, 236, 532, 644, 790, 920, 1532, 1722, 1743
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	5 cut(s)	80, 422, 560, 1216, 1603
Hpy188I	TCNGA	7 cut(s)	141, 453, 478, 643, 852, 1198, 1636
Hpy188III	TCNNGA	9 cut(s)	344, 373, 727, 818, 1052, 1336, 1360, 1379, 1577
HpyAV	CCTTC	2 cut(s)	693, 1609
HpyCH4III	ACNGT	2 cut(s)	463, 1673
HpyCH4IV	ACGT	1 cut(s)	1213
HpyCH4V	TGCA	9 cut(s)	256, 263, 842, 984, 1167, 1487, 1606, 1628, 1650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	5 cut(s)	159, 234, 528, 642, 1172
HpySE526I	ACGT	1 cut(s)	1213
Hsp92I	GRCGYC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	448, 729, 823
LguI	GCTCTTC	1 cut(s)	1431
LmnI	GCTCC	2 cut(s)	1002, 1138
Lsp1109I	GCAGC	5 cut(s)	28, 275, 826, 868, 1634
LweI	GCATC	7 cut(s)	415, 582, 1030, 1474, 1496, 1585, 1738
MaeI	CTAG	3 cut(s)	344, 971, 1737
MaeII	ACGT	1 cut(s)	1213
MaeIII	GTNAC	5 cut(s)	86, 358, 889, 1214, 1270
MalI	GATC	3 cut(s)	450, 731, 825
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	3 cut(s)	448, 729, 823
MfeI	CAATTG	2 cut(s)	1302, 1431
MhlI	GDGCHC	3 cut(s)	565, 999, 1668
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	5 cut(s)	245, 653, 1541, 1716, 1737
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	2 cut(s)	258, 1489
MroXI	GAANNNNTTC	3 cut(s)	939, 1151, 1505
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	186, 858, 876
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	1647
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	490, 597, 1353
MunI	CAATTG	2 cut(s)	1302, 1431
Mva1269I	GAATGC	1 cut(s)	1188
MvaI	CCWGG	3 cut(s)	490, 597, 1353
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	2 cut(s)	1128, 1614
NdeII	GATC	3 cut(s)	448, 729, 823
NlaIV	GGNNCC	4 cut(s)	331, 678, 961, 998
NmeAIII	GCCGAG	1 cut(s)	1687
NmuCI	GTSAC	4 cut(s)	86, 358, 889, 1270
NsiI	ATGCAT	2 cut(s)	258, 1489
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	3 cut(s)	134, 943, 1180
PaeR7I	CTCGAG	1 cut(s)	1724
PciSI	GCTCTTC	1 cut(s)	1431
PctI	GAATGC	1 cut(s)	1188
PdmI	GAANNNNTTC	3 cut(s)	939, 1151, 1505
PfeI	GAWTC	4 cut(s)	136, 532, 790, 920
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	1620
PkrI	GCNGC	7 cut(s)	43, 265, 841, 883, 1462, 1649, 1660
PleI	GAGTC	5 cut(s)	244, 652, 1540, 1716, 1737
PpsI	GAGTC	5 cut(s)	244, 652, 1540, 1716, 1737
Ppu21I	YACGTR	1 cut(s)	1214
PshAI	GACNNNNGTC	1 cut(s)	275
PsiI	TTATAA	2 cut(s)	720, 1242
Psp6I	CCWGG	3 cut(s)	488, 595, 1351
PspGI	CCWGG	3 cut(s)	488, 595, 1351
PspN4I	GGNNCC	4 cut(s)	331, 678, 961, 998
PspPI	GGNCC	1 cut(s)	1579
PspXI	VCTCGAGB	1 cut(s)	1724
PstI	CTGCAG	2 cut(s)	844, 1652
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	1647
RsaI	GTAC	3 cut(s)	437, 762, 1388
RsaNI	GTAC	3 cut(s)	436, 761, 1387
RseI	CAYNNNNRTG	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	1431
SaqAI	TTAA	3 cut(s)	186, 858, 876
SatI	GCNGC	7 cut(s)	42, 264, 840, 882, 1461, 1648, 1659
Sau3AI	GATC	3 cut(s)	448, 729, 823
Sau96I	GGNCC	1 cut(s)	1579
SchI	GAGTC	5 cut(s)	245, 653, 1541, 1716, 1737
ScrFI	CCNGG	3 cut(s)	490, 597, 1353
SduI	GDGCHC	3 cut(s)	565, 999, 1668
SfaNI	GCATC	7 cut(s)	415, 582, 1030, 1474, 1496, 1585, 1738
SfcI	CTRYAG	5 cut(s)	513, 840, 1642, 1648, 1669
Sfr274I	CTCGAG	1 cut(s)	1724
SfuI	TTCGAA	3 cut(s)	134, 943, 1180
SinI	GGWCC	1 cut(s)	1579
SlaI	CTCGAG	1 cut(s)	1724
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	4 cut(s)	655, 818, 1324, 1724
SmoI	CTYRAG	4 cut(s)	655, 818, 1324, 1724
SsiI	CCGC	4 cut(s)	481, 1318, 1461, 1659
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	3 cut(s)	344, 971, 1737
StyD4I	CCNGG	3 cut(s)	488, 595, 1351
StyI	CCWWGG	4 cut(s)	1122, 1128, 1446, 1614
TaaI	ACNGT	2 cut(s)	463, 1673
TaiI	ACGT	1 cut(s)	1216
TaqI	TCGA	7 cut(s)	134, 279, 667, 943, 1155, 1180, 1725
TaqII	GACCGA	2 cut(s)	816, 1596
TatI	WGTACW	2 cut(s)	760, 1386
TauI	GCSGC	2 cut(s)	1463, 1661
TfiI	GAWTC	4 cut(s)	136, 532, 790, 920
Tru1I	TTAA	3 cut(s)	186, 858, 876
Tru9I	TTAA	3 cut(s)	186, 858, 876
TscAI	CASTG	3 cut(s)	238, 570, 1081
TseFI	GTSAC	4 cut(s)	86, 358, 889, 1270
TseI	GCWGC	5 cut(s)	41, 263, 839, 881, 1647
Tsp45I	GTSAC	4 cut(s)	86, 358, 889, 1270
TspDTI	ATGAA	9 cut(s)	40, 370, 435, 813, 1164, 1210, 1299, 1491, 1591
TspRI	CASTG	3 cut(s)	238, 570, 1081
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	1620
VpaK11BI	GGWCC	1 cut(s)	1579
XapI	RAATTY	2 cut(s)	179, 1151
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1413
XhoI	CTCGAG	1 cut(s)	1724
XmiI	GTMKAC	4 cut(s)	279, 524, 898, 1641
XmnI	GAANNNNTTC	3 cut(s)	939, 1151, 1505
XspI	CTAG	3 cut(s)	344, 971, 1737
Zsp2I	ATGCAT	2 cut(s)	258, 1489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.