Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009809

Physical Location & Seq

Genomic Coordinates Forward (+)

24152265 .. 24155694

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGGCTTCATATACGCCCAAAAACATCCTCATAACTGGGGCAGCTGGCTTCATTGCTTCCCATGTCGCCAACCGGCTCGTTCGCAGTCACCCTGAATACAATATCGTTGTGCTTGACAAGCTTGACTATTGTTCGAACCTGAAAAACCTCCTTCCCTCTAAGTCGTCACCCAATTTCAAGTTTGTTAAGGGGGACATAGGAAGTGCCGACCTTGTCAACTATCTCCTCATCACTGAGTCGATAGATACAATAATGCATTTTGCAGCCCAGACCCATGTCGACAACTCCTTTGGCAACAGCTTCGAGTTCACAAAGAACAACATCTATGGCACCCATGTTCTTCTAGAAGCATGTAAAGTCACTGGCCAAATCAGGAGGTTCATCCATGTTAGCACAGATGAGGTTTATGGTGAGACTGATGAAGATGCTGTTGTAGGAAACCATGAGGCATCTCAACTCCTCCCAACAAATCCATACTCTGCAACAAAAGCTGGAGCAGAAATGCTTGTTATGGCATATGGCAGGTCTTATGGGTTGCCTGTTATAACGACCCGCGGAAACAATGTTTATGGACCAAATCAATTTCCTGAAAAATTGATTCCAAAGTTCATTCTCTTGGCTATGCAAGGGAAACCTCTTCCCATTCATGGGGATGGTGCTAATGTGAGGAGCTACTTATACTGCGAGGATGTTGCCGAGGCTTTTGAACTCATTCTTCACAAAGGAGAGGTTGGCCATGTGTACAATATTGGGACAAAGAAGGAAAGGAGAGTTATTGATGTGGCCAGAGATATATGCAGACTTTTCAATGTGGACTCGGAAGCATGCATCAAGTTTGTTGAAAACAGACCTTTCAATGACCAGAGGTACTTCCTTGATGATCAGAAGTTGACGGTGTTGGGGTGGTCAGAGCGGACTACCTGGGAAGAGGGGCTGAAGAAGACTATAGAATGGTACACTAAGAATCCTAACTGGTGGGGTGATGTATCTGGGGCACTGCTTCCTCATCCACGAATGTTGATGATGCCTGGTGGAATTGAGAGACATTTTGATGAGCCTGAAGAGGAAAAATCTGAGTCTTATGTCTCAAGTAATCCTCGAATGTTGGTTCCCCCTTCCAAATGCTGTGGCTCTCCTCGTAAACCTCCTTATAAGTTCTTGATCTATGGTAAGACTGGGTGGATTGGTGGTGTACTTGGGAAGCTCTGTGAAAAACAAGGGATTCCTTATGAATATGGAAAAGGGCGTCTTGAGGATCGGTCTTCACTTGCTGCAGATATTCAGAATATTAAGCCAACTCATGTGTTTAATGCTGCTGGTGTGACTGGTAGACCTAATGTTGATTGGTGTGAATCTCATAAAGCAGAAACAATTCGAGCCAATGTTGCTGGAACCCTAACCCTAGCAGATGTTTGCAGAGAGCATGGGCTCCTTATCGTAAATTTTGCGACTGGGTGTATATTTGAGTATGATGCTAAACATCCAGAGGGTTCAGGGATTGGGTTCACTGAAGAAGACAAACCCAATTTCTTTGGTTCTTTCTATTCAAAAACCAAGGCCATGGTTGAGGAGCTATTGAATGAATTCGACAATGTTTGCACTCTTAGAGTTCGAATGCCCATCTCATCAGACCTGAACAACCCGCGTAACTTCATCACCAAGATTTCTCGTTATAACAAAGTGGTCAACATTCCTAACAGCGTGACCATCTTGGATGAACTACTACCCATTTCAATCGAGATGGCAAAGCGGAACTTGAGGGGTATCTGGAACTTCACAAATCCTGGGGTCGTGAGCCATAATGAGATTCTGGAAATGTACAAGCAATACATTGACCCAAGTTTCAAATGGGCGAACTTCACAATTGAAGAGCAAGCCAAGGTTATAGTTGCCGCCCGAAGCAACAATGAAATGGATGCATCCAAGTTGAAGAAAGAGTTCCCCGAGTTGCTACCAATCAAGGAGTCGCTGATAAAGTATGTCTTTGAACCAAACAAGAAAAGTTCTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

671

Amino Acids

75.53

Weight (kDa)

6.52

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	8 - 318	7.5e-15	RmlD substrate binding domain
Epimerase	PF01370	9 - 251	4.8e-55	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	9 - 280	3.7e-20	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	10 - 315	2.7e-65	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	10 - 235	2e-23	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	11 - 191	2.1e-18	Male sterility protein
RmlD_sub_bind	PF04321	385 - 555	1.5e-14	RmlD substrate binding domain
Epimerase	PF01370	388 - 538	2.4e-11	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78570
fragaria_vesca	FvH4_3g17640 FvH4_3g17640 FvH4_3g17640
malus_domestica	MD03G1250400.v1.1 MD11G1270500.v1.1
prunus_persica	Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1
pyrus_communis	pycom11g23940
rosa_chinensis	RchiOBHm_Chr5g0029371
rosa_laevigata	RLG00000033159
rosa_multiflora	Rmu_sc0004373.1_g000022
rosa_roxburghii	Rroxscaffold_1G00050590
rosa_rugosa	Rorug05G0113800 Rorug05G0113900
rosa_samantha	Rh5AG205700 Rh5BG204100 Rh5CG226000 Rh5DG207700
rosa_wichuraiana	Rw5G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	545, 1152, 1674
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	913
AccI	GTMKAC	2 cut(s)	279, 1330
AccII	CGCG	2 cut(s)	555, 1645
AciI	CCGC	6 cut(s)	553, 555, 913, 1643, 1750, 1893
AclWI	GGATC	1 cut(s)	1263
AcoI	YGGCCR	3 cut(s)	364, 733, 783
AcsI	RAATTY	2 cut(s)	1441, 1583
AcuI	CTGAAG	3 cut(s)	956, 1080, 1530
AcyI	GRCGYC	1 cut(s)	1246
AfaI	GTAC	5 cut(s)	743, 869, 956, 1194, 1820
AfiI	CCNNNNNNNGG	2 cut(s)	647, 648
AjnI	CCWGG	3 cut(s)	920, 1027, 1783
AluBI	AGCT	7 cut(s)	44, 121, 300, 491, 672, 1204, 1573
AluI	AGCT	7 cut(s)	44, 121, 300, 491, 672, 1204, 1573
Alw26I	GTCTC	3 cut(s)	407, 1036, 1090
AlwI	GGATC	1 cut(s)	1263
Ama87I	CYCGRG	1 cut(s)	1943
AoxI	GGCC	4 cut(s)	364, 733, 783, 1557
ApeKI	GCWGC	4 cut(s)	41, 263, 1271, 1313
ApoI	RAATTY	2 cut(s)	1441, 1583
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	4 cut(s)	711, 1371, 1583, 1937
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	5 cut(s)	80, 159, 422, 992, 1648
AsuII	TTCGAA	2 cut(s)	134, 1612
AvaI	CYCGRG	1 cut(s)	1943
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	997
BalI	TGGCCA	3 cut(s)	366, 735, 785
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	1431
BbsI	GAAGAC	3 cut(s)	947, 1254, 1521
BbvI	GCAGC	4 cut(s)	53, 275, 1258, 1300
BccI	CCATC	4 cut(s)	647, 1628, 1715, 1735
BcgI	CGANNNNNNTGC	4 cut(s)	283, 317, 674, 708
BciT130I	CCWGG	3 cut(s)	922, 1029, 1785
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	3 cut(s)	407, 1036, 1090
BfaI	CTAG	2 cut(s)	344, 1403
BfmI	CTRYAG	2 cut(s)	945, 1272
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	5 cut(s)	42, 264, 1272, 1314, 1893
BlsI	GCNGC	5 cut(s)	43, 265, 1273, 1315, 1894
Bme1390I	CCNGG	3 cut(s)	922, 1029, 1785
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	1943
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	4 cut(s)	331, 1110, 1393, 1430
BmrFI	CCNGG	3 cut(s)	922, 1029, 1785
BmrI	ACTGGG	3 cut(s)	45, 1185, 1461
BmsI	GCATC	7 cut(s)	415, 458, 837, 1014, 1462, 1906, 1928
BmuI	ACTGGG	3 cut(s)	45, 1185, 1461
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	3 cut(s)	947, 1254, 1521
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	2 cut(s)	134, 1612
BpuEI	CTTGAG	3 cut(s)	1072, 1271, 1777
BsaHI	GRCGYC	1 cut(s)	1246
BsaJI	CCNNGG	7 cut(s)	553, 696, 921, 1554, 1560, 1784, 1878
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 648
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	6 cut(s)	40, 367, 977, 1180, 1330, 1456
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	922, 1029, 1785
BseDI	CCNNGG	7 cut(s)	553, 696, 921, 1554, 1560, 1784, 1878
BseGI	GGATG	9 cut(s)	24, 381, 658, 694, 1006, 1480, 1720, 1919, 1921
BseLI	CCNNNNNNNGG	2 cut(s)	647, 648
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	225, 1065
BseNI	ACTGG	6 cut(s)	40, 367, 977, 1180, 1330, 1456
BseRI	GAGGAG	5 cut(s)	215, 449, 682, 1125, 1583
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	4 cut(s)	53, 275, 1258, 1300
Bsh1236I	CGCG	2 cut(s)	555, 1645
BshFI	GGCC	4 cut(s)	366, 735, 785, 1559
BshNI	GGYRCC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	1943
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	206, 766
BslI	CCNNNNNNNGG	2 cut(s)	647, 648
BsmAI	GTCTC	3 cut(s)	407, 1036, 1090
BsmFI	GGGAC	2 cut(s)	206, 766
BsmI	GAATGC	1 cut(s)	1620
BsnI	GGCC	4 cut(s)	366, 735, 785, 1559
BsoBI	CYCGRG	1 cut(s)	1943
Bsp119I	TTCGAA	2 cut(s)	134, 1612
Bsp1286I	GDGCHC	2 cut(s)	997, 1431
Bsp1407I	TGTACA	2 cut(s)	741, 1818
Bsp143I	GATC	3 cut(s)	880, 1161, 1255
Bsp19I	CCATGG	1 cut(s)	1560
BspACI	CCGC	6 cut(s)	553, 555, 913, 1643, 1750, 1893
BspANI	GGCC	4 cut(s)	366, 735, 785, 1559
BspCNI	CTCAG	2 cut(s)	226, 1066
BspFNI	CGCG	2 cut(s)	555, 1645
BspLI	GGNNCC	4 cut(s)	331, 1110, 1393, 1430
BspMAI	CTGCAG	1 cut(s)	1276
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	1263
BspQI	GCTCTTC	1 cut(s)	1863
BspT104I	TTCGAA	2 cut(s)	134, 1612
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	72
BsrGI	TGTACA	2 cut(s)	741, 1818
BsrI	ACTGG	6 cut(s)	40, 367, 977, 1180, 1330, 1456
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	7 cut(s)	553, 696, 921, 1554, 1560, 1784, 1878
BssMI	GATC	3 cut(s)	880, 1161, 1255
BssNI	GRCGYC	1 cut(s)	1246
BssT1I	CCWWGG	3 cut(s)	1554, 1560, 1878
Bst2UI	CCWGG	3 cut(s)	922, 1029, 1785
Bst4CI	ACNGT	1 cut(s)	895
Bst6I	CTCTTC	4 cut(s)	642, 921, 1056, 1863
BstACI	GRCGYC	1 cut(s)	1246
BstAUI	TGTACA	2 cut(s)	741, 1818
BstBI	TTCGAA	2 cut(s)	134, 1612
BstC8I	GCNNGC	3 cut(s)	46, 826, 1875
BstDEI	CTNAG	5 cut(s)	159, 234, 960, 1074, 1604
BstDSI	CCRYGG	2 cut(s)	553, 1560
BstF5I	GGATG	9 cut(s)	24, 381, 658, 694, 1006, 1480, 1720, 1919, 1921
BstFNI	CGCG	2 cut(s)	555, 1645
BstKTI	GATC	3 cut(s)	883, 1164, 1258
BstMAI	GTCTC	3 cut(s)	407, 1036, 1090
BstMBI	GATC	3 cut(s)	880, 1161, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 488, 1385
BstNI	CCWGG	3 cut(s)	922, 1029, 1785
BstNSI	RCATGY	2 cut(s)	354, 828
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	920, 1027, 1783
BstSFI	CTRYAG	2 cut(s)	945, 1272
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	2 cut(s)	555, 1645
BstV1I	GCAGC	4 cut(s)	53, 275, 1258, 1300
BstV2I	GAAGAC	3 cut(s)	947, 1254, 1521
BstXI	CCANNNNNNTGG	1 cut(s)	1561
BsuRI	GGCC	4 cut(s)	366, 735, 785, 1559
BtgI	CCRYGG	2 cut(s)	553, 1560
BtsCI	GGATG	9 cut(s)	24, 381, 658, 694, 1006, 1480, 1720, 1919, 1921
BtsI	GCAGTG	1 cut(s)	995
BtsIMutI	CAGTG	4 cut(s)	231, 360, 995, 1506
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	46, 826, 1875
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	572
Cfr42I	CCGCGG	1 cut(s)	556
CseI	GACGC	1 cut(s)	1235
Csp6I	GTAC	5 cut(s)	742, 868, 955, 1193, 1819
CspCI	CAANNNNNGTGG	4 cut(s)	999, 1034, 1108, 1143
CviQI	GTAC	5 cut(s)	742, 868, 955, 1193, 1819
DdeI	CTNAG	5 cut(s)	159, 234, 960, 1074, 1604
DpnI	GATC	3 cut(s)	882, 1163, 1257
DpnII	GATC	3 cut(s)	880, 1161, 1255
EaeI	YGGCCR	3 cut(s)	364, 733, 783
Eam1104I	CTCTTC	4 cut(s)	642, 921, 1056, 1863
EarI	CTCTTC	4 cut(s)	642, 921, 1056, 1863
Eco130I	CCWWGG	3 cut(s)	1554, 1560, 1878
Eco24I	GRGCYC	1 cut(s)	1431
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	3 cut(s)	956, 1080, 1530
Eco88I	CYCGRG	1 cut(s)	1943
EcoRI	GAATTC	1 cut(s)	1583
EcoRII	CCWGG	3 cut(s)	920, 1027, 1783
EcoT14I	CCWWGG	3 cut(s)	1554, 1560, 1878
EcoT22I	ATGCAT	3 cut(s)	258, 830, 1921
EcoT38I	GRGCYC	1 cut(s)	1431
ErhI	CCWWGG	3 cut(s)	1554, 1560, 1878
FalI	AAGNNNNNCTT	6 cut(s)	1233, 1265, 1739, 1771, 1967, 1999
FaqI	GGGAC	2 cut(s)	206, 766
FauI	CCCGC	2 cut(s)	560, 1650
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	2 cut(s)	279, 1330
Fnu4HI	GCNGC	5 cut(s)	42, 264, 1272, 1314, 1893
FokI	GGATG	9 cut(s)	11, 368, 665, 701, 993, 1467, 1727, 1906, 1928
FriOI	GRGCYC	1 cut(s)	1431
Fsp4HI	GCNGC	5 cut(s)	42, 264, 1272, 1314, 1893
FspBI	CTAG	2 cut(s)	344, 1403
GluI	GCNGC	5 cut(s)	42, 264, 1272, 1314, 1893
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	366, 735, 785, 1559
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	1235
Hin1I	GRCGYC	1 cut(s)	1246
HincII	GTYRAC	4 cut(s)	217, 280, 891, 1687
HindII	GTYRAC	4 cut(s)	217, 280, 891, 1687
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	9 cut(s)	236, 598, 815, 964, 1076, 1222, 1352, 1807, 1964
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	5 cut(s)	80, 159, 422, 992, 1648
Hpy188I	TCNGA	6 cut(s)	820, 885, 910, 1075, 1284, 1630
HpyAV	CCTTC	3 cut(s)	161, 754, 1125
HpyCH4III	ACNGT	1 cut(s)	895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 488, 1385
HpyF3I	CTNAG	5 cut(s)	159, 234, 960, 1074, 1604
Hsp92I	GRCGYC	1 cut(s)	1246
Ksp22I	TGATCA	1 cut(s)	880
KspI	CCGCGG	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	880, 1161, 1255
LguI	GCTCTTC	1 cut(s)	1863
LmnI	GCTCC	4 cut(s)	494, 669, 1434, 1570
Lsp1109I	GCAGC	4 cut(s)	53, 275, 1258, 1300
LweI	GCATC	7 cut(s)	415, 458, 837, 1014, 1462, 1906, 1928
MaeI	CTAG	2 cut(s)	344, 1403
MaeIII	GTNAC	6 cut(s)	86, 165, 358, 1321, 1646, 1702
MalI	GATC	3 cut(s)	882, 1163, 1257
MbiI	CCGCTC	1 cut(s)	913
MboI	GATC	3 cut(s)	880, 1161, 1255
MfeI	CAATTG	1 cut(s)	1863
MhlI	GDGCHC	2 cut(s)	997, 1431
MlsI	TGGCCA	3 cut(s)	366, 735, 785
MluNI	TGGCCA	3 cut(s)	366, 735, 785
MlyI	GAGTC	4 cut(s)	245, 809, 1085, 1973
Mox20I	TGGCCA	3 cut(s)	366, 735, 785
Mph1103I	ATGCAT	3 cut(s)	258, 830, 1921
MroXI	GAANNNNTTC	4 cut(s)	711, 1371, 1583, 1937
MscI	TGGCCA	3 cut(s)	366, 735, 785
MseI	TTAA	4 cut(s)	186, 1290, 1308, 2014
MslI	CAYNNNNRTG	2 cut(s)	651, 1050
Msp20I	TGGCCA	3 cut(s)	366, 735, 785
MspA1I	CMGCKG	2 cut(s)	44, 555
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	922, 1029, 1785
MunI	CAATTG	1 cut(s)	1863
Mva1269I	GAATGC	1 cut(s)	1620
MvaI	CCWGG	3 cut(s)	922, 1029, 1785
MvnI	CGCG	2 cut(s)	555, 1645
MwoI	GCNNNNNNNGC	3 cut(s)	118, 488, 1385
NcoI	CCATGG	1 cut(s)	1560
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	880, 1161, 1255
NlaIV	GGNNCC	4 cut(s)	331, 1110, 1393, 1430
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	5 cut(s)	86, 165, 358, 1321, 1702
NsiI	ATGCAT	3 cut(s)	258, 830, 1921
NspI	RCATGY	2 cut(s)	354, 828
NspV	TTCGAA	2 cut(s)	134, 1612
PaeI	GCATGC	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	1863
PctI	GAATGC	1 cut(s)	1620
PdmI	GAANNNNTTC	4 cut(s)	711, 1371, 1583, 1937
PfeI	GAWTC	5 cut(s)	598, 964, 1222, 1352, 1807
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	43, 265, 1273, 1315, 1894
PleI	GAGTC	4 cut(s)	244, 809, 1084, 1972
PpsI	GAGTC	4 cut(s)	244, 809, 1084, 1972
PshAI	GACNNNNGTC	1 cut(s)	275
PsiI	TTATAA	3 cut(s)	545, 1152, 1674
Psp6I	CCWGG	3 cut(s)	920, 1027, 1783
PspGI	CCWGG	3 cut(s)	920, 1027, 1783
PspN4I	GGNNCC	4 cut(s)	331, 1110, 1393, 1430
PspPI	GGNCC	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	1276
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	5 cut(s)	743, 869, 956, 1194, 1820
RsaNI	GTAC	5 cut(s)	742, 868, 955, 1193, 1819
RseI	CAYNNNNRTG	2 cut(s)	651, 1050
SacII	CCGCGG	1 cut(s)	556
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	1863
SaqAI	TTAA	4 cut(s)	186, 1290, 1308, 2014
SatI	GCNGC	5 cut(s)	42, 264, 1272, 1314, 1893
Sau3AI	GATC	3 cut(s)	880, 1161, 1255
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	4 cut(s)	245, 809, 1085, 1973
ScrFI	CCNGG	3 cut(s)	922, 1029, 1785
SduI	GDGCHC	2 cut(s)	997, 1431
SfaNI	GCATC	7 cut(s)	415, 458, 837, 1014, 1462, 1906, 1928
SfcI	CTRYAG	2 cut(s)	945, 1272
Sfr303I	CCGCGG	1 cut(s)	556
SfuI	TTCGAA	2 cut(s)	134, 1612
SgrBI	CCGCGG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	651, 1050
SmlI	CTYRAG	3 cut(s)	1087, 1250, 1756
SmoI	CTYRAG	3 cut(s)	1087, 1250, 1756
SphI	GCATGC	1 cut(s)	828
SsiI	CCGC	6 cut(s)	553, 555, 913, 1643, 1750, 1893
SspI	AATATT	2 cut(s)	748, 1288
SspMI	CTAG	2 cut(s)	344, 1403
StyD4I	CCNGG	3 cut(s)	920, 1027, 1783
StyI	CCWWGG	3 cut(s)	1554, 1560, 1878
TaaI	ACNGT	1 cut(s)	895
TaqI	TCGA	9 cut(s)	134, 239, 279, 303, 1099, 1375, 1587, 1612, 1737
TaqII	GACCGA	1 cut(s)	1248
TatI	WGTACW	3 cut(s)	741, 1192, 1818
TauI	GCSGC	1 cut(s)	1895
TfiI	GAWTC	5 cut(s)	598, 964, 1222, 1352, 1807
Tru1I	TTAA	4 cut(s)	186, 1290, 1308, 2014
Tru9I	TTAA	4 cut(s)	186, 1290, 1308, 2014
TscAI	CASTG	4 cut(s)	238, 367, 1002, 1513
TseFI	GTSAC	5 cut(s)	86, 165, 358, 1321, 1702
TseI	GCWGC	4 cut(s)	41, 263, 1271, 1313
Tsp45I	GTSAC	5 cut(s)	86, 165, 358, 1321, 1702
TspRI	CASTG	4 cut(s)	238, 367, 1002, 1513
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	1441, 1583
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	2 cut(s)	354, 828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1845
XmiI	GTMKAC	2 cut(s)	279, 1330
XmnI	GAANNNNTTC	4 cut(s)	711, 1371, 1583, 1937
XspI	CTAG	2 cut(s)	344, 1403
Zsp2I	ATGCAT	3 cut(s)	258, 830, 1921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.