Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009809

Physical Location & Seq

Genomic Coordinates Reverse (-)

10148099 .. 10149644

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTCACGTGATGTTGCTTTTCAAGGTTGTCAGAGACAATTTCGAAACTGACTTTGTAAGGGGAAAGCTTGTTGTGTATGGTTCAGACCAAACACATTGCACCCTTCAAAAAGCTACCCAAATTGTTGGAATCAACCCGGAGAACTTCAGGGCCATCAAGACTACAAAGTCAACTGGATTTGCACTATCACCTGAAATGCTAAGACTGACAATAAGTTCAGACAGAGCAAAAGGGCTAGTGCCACTTTTTCTATGTGCCACAATGGGCACAACCGCAACCACTGCTATAGATCCATTGGGGGCAGTGTGCAATGTAGCCAAAGATTATGGCATGTGGGTTCATGTGGATGCTGCATATGCAGGAAGTGCTTGCATTTGTCCAGAGTTTCGTCATTTCATTGATGGCGTTGAGGGTGCAAACTCATTTAGTTTCAACCCGCATAAATGGTTATTTACTGCAATGGACTGTTGCTGCCTTTGGGTTAAGAGCCCAAGTGCATTAATAAATTCACTGTCGACGAATCCAGAGTATTTGAGGAACAAAGCCAGTGATACAAAGCAAGTTGTGGACTACAAAAACTGGCAAATAGCACTAAGCCGGAGGTTCCGGGCATTGAAGCTATGGCTTGTGCTAAGAAGCTACGGCGTGGCTAACCTTAGAAAATTTATTCGAAGCCATGTCAAAATGGCCAAGATTTTTGAAGGGCTTCTGAGAATGGACAATAGGTTTGAAATTGTGGTTCCTAGAAACTTCTCCTTGGTCTGTTTCAGGATTTCACTATCCGCAATAGTTAGTGATGATCATTATGATGGTGAGGAGTACAATATGGTAAACGAGATCAATCGCAAGTTGCTGGAGGCCATCAATGCATCAGGCTCTGTGTTCATGACTCATGCTGTGGTTGGAGGTGTCTACGCGCTACGGTGCGCAGTTGGTGAAACTCTAATTGAGGAAAAGCACATTCGAGAGGCCTGGAAGGCGGTGCAAGGCCAGGCACATACAATTCTGTCAGCATGTATTGTTGACTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

345

Amino Acids

38.52

Weight (kDa)

8.81

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	18 - 259	7.3e-75	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78570
fragaria_vesca	FvH4_3g17640 FvH4_3g17640 FvH4_3g17640
malus_domestica	MD03G1250400.v1.1 MD11G1270500.v1.1
prunus_persica	Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1
pyrus_communis	pycom11g23940
rosa_chinensis	RchiOBHm_Chr5g0029371
rosa_laevigata	RLG00000033159
rosa_multiflora	Rmu_sc0004373.1_g000022
rosa_roxburghii	Rroxscaffold_1G00050590
rosa_rugosa	Rorug05G0113800 Rorug05G0113900
rosa_samantha	Rh5AG205700 Rh5BG204100 Rh5CG226000 Rh5DG207700
rosa_wichuraiana	Rw5G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
Acc16I	TGCGCA	1 cut(s)	931
AccI	GTMKAC	2 cut(s)	518, 915
AccII	CGCG	1 cut(s)	920
AciI	CCGC	4 cut(s)	276, 440, 786, 983
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	508, 665
AcuI	CTGAAG	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	824
AgsI	TTSAA	6 cut(s)	25, 110, 436, 619, 704, 734
AjnI	CCWGG	2 cut(s)	974, 993
AluBI	AGCT	4 cut(s)	70, 116, 622, 642
AluI	AGCT	4 cut(s)	70, 116, 622, 642
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	5 cut(s)	153, 690, 861, 972, 991
ApeKI	GCWGC	2 cut(s)	353, 474
ApoI	RAATTY	2 cut(s)	508, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AseI	ATTAAT	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	922, 932
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	140, 611
AsuHPI	GGTGA	3 cut(s)	183, 827, 950
AsuII	TTCGAA	2 cut(s)	45, 673
BaeGI	GKGCMC	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	494
BbrPI	CACGTG	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	340, 461
BccI	CCATC	4 cut(s)	164, 398, 806, 872
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	2 cut(s)	976, 995
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	2 cut(s)	140, 611
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	239, 747
BfmI	CTRYAG	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	980
BisI	GCNGC	2 cut(s)	354, 475
BlsI	GCNGC	2 cut(s)	355, 476
Bme1390I	CCNGG	4 cut(s)	140, 611, 976, 995
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	608, 744
BmrFI	CCNGG	4 cut(s)	140, 611, 976, 995
BmsI	GCATC	2 cut(s)	340, 881
BpmI	CTGGAG	1 cut(s)	878
Bpu14I	TTCGAA	2 cut(s)	45, 673
BpuMI	CCSGG	2 cut(s)	140, 611
BsaAI	YACGTR	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	759
Bse1I	ACTGG	3 cut(s)	181, 549, 587
Bse3DI	GCAATG	3 cut(s)	97, 319, 468
BseBI	CCWGG	2 cut(s)	976, 995
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	355
BseMI	GCAATG	3 cut(s)	97, 319, 468
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	3 cut(s)	181, 549, 587
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	340, 461
Bsh1236I	CGCG	1 cut(s)	920
BshFI	GGCC	5 cut(s)	155, 692, 863, 974, 993
BsiSI	CCGG	3 cut(s)	140, 601, 610
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	5 cut(s)	155, 692, 863, 974, 993
Bsp119I	TTCGAA	2 cut(s)	45, 673
Bsp1286I	GDGCHC	2 cut(s)	272, 494
Bsp143I	GATC	3 cut(s)	292, 802, 840
BspACI	CCGC	4 cut(s)	276, 440, 786, 983
BspANI	GGCC	5 cut(s)	155, 692, 863, 974, 993
BspCNI	CTCAG	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	920
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	608, 744
BspPI	GGATC	1 cut(s)	287
BspT104I	TTCGAA	2 cut(s)	45, 673
BsrDI	GCAATG	3 cut(s)	97, 319, 468
BsrI	ACTGG	3 cut(s)	181, 549, 587
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	3 cut(s)	292, 802, 840
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	976, 995
Bst4CI	ACNGT	3 cut(s)	470, 516, 927
BstAPI	GCANNNNNTGC	2 cut(s)	284, 368
BstBAI	YACGTR	1 cut(s)	10
BstBI	TTCGAA	2 cut(s)	45, 673
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	5 cut(s)	203, 596, 635, 659, 713
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	920
BstHHI	GCGC	2 cut(s)	922, 932
BstKTI	GATC	3 cut(s)	295, 805, 843
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	3 cut(s)	292, 802, 840
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 359, 368, 869, 980
BstNI	CCWGG	2 cut(s)	976, 995
BstNSI	RCATGY	2 cut(s)	337, 1020
BstSCI	CCNGG	4 cut(s)	138, 609, 974, 993
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	1 cut(s)	920
BstV1I	GCAGC	2 cut(s)	340, 461
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	5 cut(s)	155, 692, 863, 974, 993
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	2 cut(s)	282, 312
BtsIMutI	CAGTG	4 cut(s)	282, 312, 512, 556
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	2 cut(s)	922, 932
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	823
CviAII	CATG	6 cut(s)	334, 344, 680, 889, 896, 1017
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	5 cut(s)	203, 596, 635, 659, 713
DpnI	GATC	3 cut(s)	294, 804, 842
DpnII	GATC	3 cut(s)	292, 802, 840
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	974
Eco24I	GRGCYC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	974, 993
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	6 cut(s)	337, 347, 683, 892, 899, 1020
FatI	CATG	6 cut(s)	333, 343, 679, 888, 895, 1016
FauI	CCCGC	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	2 cut(s)	518, 915
Fnu4HI	GCNGC	2 cut(s)	354, 475
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	2 cut(s)	354, 475
FspBI	CTAG	2 cut(s)	239, 747
FspI	TGCGCA	1 cut(s)	931
GlaI	GCGC	2 cut(s)	921, 931
GluI	GCNGC	2 cut(s)	354, 475
GsuI	CTGGAG	1 cut(s)	878
HaeIII	GGCC	5 cut(s)	155, 692, 863, 974, 993
HapII	CCGG	3 cut(s)	140, 601, 610
HhaI	GCGC	2 cut(s)	922, 932
Hin1II	CATG	6 cut(s)	337, 347, 683, 892, 899, 1020
Hin6I	GCGC	2 cut(s)	920, 930
HinP1I	GCGC	2 cut(s)	920, 930
HincII	GTYRAC	3 cut(s)	174, 519, 1027
HindII	GTYRAC	3 cut(s)	174, 519, 1027
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	132, 523, 892, 1028
HpaII	CCGG	3 cut(s)	140, 601, 610
HphI	GGTGA	3 cut(s)	183, 827, 950
Hpy166II	GTNNAC	6 cut(s)	174, 519, 571, 835, 916, 1027
Hpy188I	TCNGA	4 cut(s)	35, 88, 223, 714
Hpy188III	TCNNGA	6 cut(s)	160, 383, 527, 772, 889, 968
Hpy8I	GTNNAC	6 cut(s)	174, 519, 571, 835, 916, 1027
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	3 cut(s)	116, 698, 973
HpyCH4III	ACNGT	3 cut(s)	470, 516, 927
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 359, 368, 869, 980
HpyF3I	CTNAG	5 cut(s)	203, 596, 635, 659, 713
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	6 cut(s)	337, 347, 683, 892, 899, 1020
HspAI	GCGC	2 cut(s)	920, 930
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	292, 802, 840
Lsp1109I	GCAGC	2 cut(s)	340, 461
LweI	GCATC	2 cut(s)	340, 881
MaeI	CTAG	2 cut(s)	239, 747
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	294, 804, 842
MboI	GATC	3 cut(s)	292, 802, 840
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	272, 494
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	7 cut(s)	40, 123, 508, 665, 735, 948, 1005
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	886, 1022
MmeI	TCCRAC	2 cut(s)	109, 886
MnlI	CCTC	8 cut(s)	406, 531, 597, 811, 853, 902, 946, 964
Mox20I	TGGCCA	1 cut(s)	692
Mph1103I	ATGCAT	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	2 cut(s)	486, 503
MslI	CAYNNNNRTG	2 cut(s)	348, 810
Msp20I	TGGCCA	1 cut(s)	692
MspI	CCGG	3 cut(s)	140, 601, 610
MspR9I	CCNGG	4 cut(s)	140, 611, 976, 995
MvaI	CCWGG	2 cut(s)	976, 995
MvnI	CGCG	1 cut(s)	920
MwoI	GCNNNNNNNGC	5 cut(s)	284, 359, 368, 869, 980
NciI	CCSGG	2 cut(s)	140, 611
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	292, 802, 840
NlaIII	CATG	6 cut(s)	337, 347, 683, 892, 899, 1020
NlaIV	GGNNCC	2 cut(s)	608, 744
NmuCI	GTSAC	1 cut(s)	5
NsbI	TGCGCA	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	874
NspI	RCATGY	2 cut(s)	337, 1020
NspV	TTCGAA	2 cut(s)	45, 673
PagI	TCATGA	1 cut(s)	888
PceI	AGGCCT	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	132, 523
PkrI	GCNGC	2 cut(s)	355, 476
PleI	GAGTC	2 cut(s)	886, 1022
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
PpsI	GAGTC	2 cut(s)	886, 1022
Ppu21I	YACGTR	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	503
Psp6I	CCWGG	2 cut(s)	974, 993
PspCI	CACGTG	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	974, 993
PspN4I	GGNNCC	2 cut(s)	608, 744
PspPI	GGNCC	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	2 cut(s)	348, 810
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	486, 503
SatI	GCNGC	2 cut(s)	354, 475
Sau3AI	GATC	3 cut(s)	292, 802, 840
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	2 cut(s)	886, 1022
ScrFI	CCNGG	4 cut(s)	140, 611, 976, 995
SduI	GDGCHC	2 cut(s)	272, 494
SfaNI	GCATC	2 cut(s)	340, 881
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	2 cut(s)	45, 673
SmiMI	CAYNNNNRTG	2 cut(s)	348, 810
Sse9I	AATT	7 cut(s)	40, 123, 508, 665, 735, 948, 1005
SseBI	AGGCCT	1 cut(s)	974
SsiI	CCGC	4 cut(s)	276, 440, 786, 983
SspMI	CTAG	2 cut(s)	239, 747
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	4 cut(s)	138, 609, 974, 993
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	470, 516, 927
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	4 cut(s)	45, 518, 673, 967
TasI	AATT	7 cut(s)	40, 123, 508, 665, 735, 948, 1005
TatI	WGTACW	1 cut(s)	822
TfiI	GAWTC	2 cut(s)	132, 523
Tru1I	TTAA	2 cut(s)	486, 503
Tru9I	TTAA	2 cut(s)	486, 503
TscAI	CASTG	4 cut(s)	289, 312, 519, 556
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	353, 474
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	332, 388, 877
TspRI	CASTG	4 cut(s)	289, 312, 519, 556
VspI	ATTAAT	1 cut(s)	503
XapI	RAATTY	2 cut(s)	508, 665
XceI	RCATGY	2 cut(s)	337, 1020
XmiI	GTMKAC	2 cut(s)	518, 915
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	239, 747
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.