Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009809

Physical Location & Seq

Genomic Coordinates Reverse (-)

10153830 .. 10154411

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTAGCCTCCCGTTCCTCCATGATCCACTTGAAAACAGCTCTTCCCACCTGACCAAAGCCCTAGACACTGAAGAGTTCAGGAAACAAGGCCATATGGTCATAGACTTCATTGCTGATTATTACCAAAACATAGAAAAATACCCAGTTCTAAGCCGAGTAGAACCCGGGTATTTGAAAAAATGCCTACCAGCTGAGTCTGCTCCATATAACCCTGAATCGATACAAACCATACTCCAAGATGTTAAAGATCACATTATTCCTGGCCTAACACATTGGCAAAGTCCCAATTTTTTCGCTTACTTTTCTTCGACTGCAAGCACTGCTGGGTTTCTTGGCGAAATGCTCATAACTGGGTTCAATGTAGTGGGGTTCAATTGGGTTTCATCGCCGGCAGCAACCGAGCTCGAACACATAGTCATGGATTGGCTCGCAGACATGCTTCAGCTTCCCAAGTCGTTTCATTTCTCTGGTAACGGTGGCGGTGTGTTACATGGGAGTACTTGCGAAGCCATTGTTTGCACAATGGCAGCTGCCAGGGACCAAATGCTAAGCCGAATTGGTAGCGAGAGTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

5.1

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	56 - 189	3.9e-34	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78570
fragaria_vesca	FvH4_3g17640 FvH4_3g17640 FvH4_3g17640
malus_domestica	MD03G1250400.v1.1 MD11G1270500.v1.1
prunus_persica	Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1 Prupe.4G155800_v2.0.a1
pyrus_communis	pycom11g23940
rosa_chinensis	RchiOBHm_Chr5g0029371
rosa_laevigata	RLG00000033159
rosa_multiflora	Rmu_sc0004373.1_g000022
rosa_roxburghii	Rroxscaffold_1G00050590
rosa_rugosa	Rorug05G0113800 Rorug05G0113900
rosa_samantha	Rh5AG205700 Rh5BG204100 Rh5CG226000 Rh5DG207700
rosa_wichuraiana	Rw5G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	93, 428
AfaI	GTAC	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	35, 178, 361, 376
AjnI	CCWGG	2 cut(s)	262, 536
AluBI	AGCT	5 cut(s)	42, 194, 406, 448, 533
AluI	AGCT	5 cut(s)	42, 194, 406, 448, 533
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	91, 265
ApeKI	GCWGC	3 cut(s)	395, 530, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
AspS9I	GGNCC	1 cut(s)	541
AsuC2I	CCSGG	2 cut(s)	168, 169
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	407, 520, 542
BciT130I	CCWGG	2 cut(s)	264, 538
BcnI	CCSGG	2 cut(s)	168, 169
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	3 cut(s)	396, 531, 534
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	3 cut(s)	397, 532, 535
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	4 cut(s)	168, 169, 264, 538
Bme18I	GGWCC	1 cut(s)	541
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	4 cut(s)	168, 169, 264, 538
BmrI	ACTGGG	2 cut(s)	140, 363
BmuI	ACTGGG	2 cut(s)	140, 363
Bpu1102I	GCTNAGC	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	168, 169
Bsa29I	ATCGAT	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	167, 537
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	146, 358
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	264, 538
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	167, 537
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	146, 358
BseXI	GCAGC	3 cut(s)	407, 520, 542
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	93, 267
BshVI	ATCGAT	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	168, 392
BslFI	GGGAC	2 cut(s)	270, 554
BsmFI	GGGAC	2 cut(s)	270, 554
BsnI	GGCC	2 cut(s)	93, 267
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	25, 250
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	93, 267
BspCNI	CTCAG	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	146, 358
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	167, 537
BssMI	GATC	2 cut(s)	25, 250
Bst2UI	CCWGG	2 cut(s)	264, 538
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	49, 69
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	319, 393, 432
BstDEI	CTNAG	3 cut(s)	152, 195, 551
BstKTI	GATC	2 cut(s)	28, 253
BstMBI	GATC	2 cut(s)	25, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 323
BstNI	CCWGG	2 cut(s)	264, 538
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	4 cut(s)	166, 167, 262, 536
BstV1I	GCAGC	3 cut(s)	407, 520, 542
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	93, 267
BsuTUI	ATCGAT	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	69, 321
Cac8I	GCNNGC	3 cut(s)	319, 393, 432
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	541
Cfr9I	CCCGGG	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	4 cut(s)	23, 421, 439, 494
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	3 cut(s)	152, 195, 551
DpnI	GATC	2 cut(s)	27, 252
DpnII	GATC	2 cut(s)	25, 250
Eam1104I	CTCTTC	2 cut(s)	49, 69
EarI	CTCTTC	2 cut(s)	49, 69
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	93, 428
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	262, 536
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	4 cut(s)	26, 424, 442, 497
FaqI	GGGAC	2 cut(s)	270, 554
FatI	CATG	4 cut(s)	22, 420, 438, 493
FauNDI	CATATG	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	396, 531, 534
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	396, 531, 534
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	3 cut(s)	396, 531, 534
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	93, 267
HapII	CCGG	2 cut(s)	168, 392
Hin1II	CATG	4 cut(s)	26, 424, 442, 497
HinfI	GANTC	2 cut(s)	197, 218
HpaII	CCGG	2 cut(s)	168, 392
Hpy188III	TCNNGA	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	317, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 323
HpyF3I	CTNAG	3 cut(s)	152, 195, 551
Hsp92II	CATG	4 cut(s)	26, 424, 442, 497
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	25, 250
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	3 cut(s)	407, 520, 542
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	473, 489
MalI	GATC	2 cut(s)	27, 252
MboI	GATC	2 cut(s)	25, 250
MboII	GAAGA	3 cut(s)	36, 86, 300
MfeI	CAATTG	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	289, 376, 558
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	20, 29
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	2 cut(s)	246, 580
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	194, 533
MspI	CCGG	2 cut(s)	168, 392
MspR9I	CCNGG	4 cut(s)	168, 169, 264, 538
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	264, 538
MwoI	GCNNNNNNNGC	2 cut(s)	200, 323
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	2 cut(s)	168, 169
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	25, 250
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	26, 424, 442, 497
NlaIV	GGNNCC	1 cut(s)	542
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	397, 532, 535
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	262, 536
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	262, 536
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	194, 533
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	246, 580
SatI	GCNGC	3 cut(s)	396, 531, 534
Sau3AI	GATC	2 cut(s)	25, 250
Sau96I	GGNCC	1 cut(s)	541
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	4 cut(s)	168, 169, 264, 538
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	6 cut(s)	44, 54, 196, 408, 450, 535
SinI	GGWCC	1 cut(s)	541
SmaI	CCCGGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	289, 376, 558
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	4 cut(s)	166, 167, 262, 536
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	221, 311, 408
TasI	AATT	3 cut(s)	289, 376, 558
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	246, 580
Tru9I	TTAA	2 cut(s)	246, 580
TscAI	CASTG	2 cut(s)	76, 328
TseI	GCWGC	3 cut(s)	395, 530, 533
TspDTI	ATGAA	3 cut(s)	100, 375, 452
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	2 cut(s)	76, 328
VpaK11BI	GGWCC	1 cut(s)	541
XceI	RCATGY	1 cut(s)	442
XmaI	CCCGGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.