Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012080

Physical Location & Seq

Genomic Coordinates Reverse (-)

1621377 .. 1623699

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGAACGGCGAAATACCCGAAAACGCTAACGAACATTGCCCAGGTCCTCAATCCGAGTCTGCTGGGAAGTCTGAATCTTGTGAAGGATGCCCGAATCAACAAATTTGTGCTACTGCTCCAAAGGGCCCTGACCCAGACTTGGTTGCAATTGCAGAAAGGATGGCTACTGTAAAGCATAAGATACTGATTTTATCAGGGAAAGGTGGAGTTGGCAAGAGCACATTCTCTGCACAACTTTCATTTGCACTAGCGGCTATGGACTTCCAGGTGGGTCTTCTGGACATCGACATTTGTGGCCCTAGCATCCCAAAGATGCTTGGCCTAGAAGGCCAAGAAATCCACCAGAGCAACCTCGGTTGGTCTCCTGTCTATGTTGAGTCCAACCTTGGGGTTATGTCAATAGGGTTTATGCTTCCAGACCCTGATGATGCAGTCATATGGAGGGGGCCACGCAAGAATGCACTCATTAAGCAATTCCTCAAAGATGTTGATTGGGGTGAGCTTGATTTTCTAATAGTTGATGCTCCTCCTGGAACCTCAGATGAACACATTTCCATTGTTCAAGATCTTGGTGCTGCTTCAATAGATGGTGCAATCATTGTCACCACTCCACAACAAGTTTCCCTTATTGATGTCAGGAAAGAGGTGAGTTTCTGCAAAAAAGTTGGAGTCCAGGTTCTTGGGGTAGTTGAAAATATGAGTGGCCTGCGCCAGCCGATGTTGGCTGCTTCCAAATTTTTGAGGTTGACAGAGGCGGGTGAGGAGAAAGATGTCACAGAATGGGTTAGAGAGTACGTGAAAGAGAAAGCACCGGAATTGCTTGATATAATAGCCTTGAATGAAGTGTTTGATAATAGTGGTGGTGGAGCCACAAGAATGTGCAGTGAAATGGGGGTACCTTTCCTGGGGAAGGTGCCGTTGGATCCCGAGCTTTGCAAGGCTGCTGAAGAAGGTAGATCTTGTTTTGTTGATCAGAAAAGTGGTACGAGTGCACCTGCGCTGAAGAAAATCATCGAGACATTGATGGAAAATCAAGGCATATCTAGAATGTTGGTAGACAATGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0042802 GO:0042803 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

357

Amino Acids

38.32

Weight (kDa)

4.64

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	58 - 242	2.1e-80	NUBPL iron-transfer P-loop NTPase
AAA_31	PF13614	61 - 213	2.6e-06	AAA domain
CbiA	PF01656	62 - 320	1.4e-12	CobQ/CobB/MinD/ParA nucleotide binding domain
ParA	PF10609	282 - 342	4.6e-07	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50960
fragaria_vesca	FvH4_6g52730
malus_domestica	MD09G1017000.v1.1 MD17G1017500.v1.1
prunus_persica	Prupe.3G300400_v2.0.a1 Prupe.3G300400_v2.0.a1
pyrus_communis	pycom111g01380 pycom17g01410
rosa_chinensis	RchiOBHm_Chr2g0174341
rosa_laevigata	RLG00000022259
rosa_multiflora	Rmu_sc0003649.1_g000032 Rmu_sc0007150.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078280
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657300 Rh2BG668300 Rh2CG631400 Rh2DG681900
rosa_wichuraiana	Rw2G053830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1006
Acc36I	ACCTGC	1 cut(s)	1006
Acc65I	GGTACC	1 cut(s)	898
AccB1I	GGYRCC	2 cut(s)	898, 916
AccI	GTMKAC	1 cut(s)	1059
AciI	CCGC	2 cut(s)	254, 758
AclWI	GGATC	2 cut(s)	920, 933
AcsI	RAATTY	2 cut(s)	105, 737
AcuI	CTGAAG	2 cut(s)	969, 1025
AfaI	GTAC	3 cut(s)	797, 900, 988
AfiI	CCNNNNNNNGG	4 cut(s)	142, 390, 908, 913
AgsI	TTSAA	4 cut(s)	566, 585, 695, 841
AjnI	CCWGG	5 cut(s)	43, 267, 532, 675, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	2 cut(s)	505, 934
AluI	AGCT	2 cut(s)	505, 934
Alw21I	GWGCWC	2 cut(s)	224, 997
Alw26I	GTCTC	2 cut(s)	369, 1013
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	2 cut(s)	920, 933
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	6 cut(s)	127, 298, 322, 331, 449, 706
ApaI	GGGCCC	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	3 cut(s)	578, 728, 944
ApoI	RAATTY	2 cut(s)	105, 737
Asp718I	GGTACC	1 cut(s)	898
AspLEI	GCGC	2 cut(s)	714, 1003
AspS9I	GGNCC	5 cut(s)	47, 127, 128, 299, 449
AsuHPI	GGTGA	4 cut(s)	512, 598, 661, 773
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	2 cut(s)	131, 997
BamHI	GGATCC	1 cut(s)	925
BanI	GGYRCC	2 cut(s)	898, 916
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	224, 997
BbvI	GCAGC	3 cut(s)	565, 715, 931
BccI	CCATC	3 cut(s)	157, 584, 1021
BceAI	ACGGC	2 cut(s)	25, 904
BciT130I	CCWGG	5 cut(s)	45, 269, 534, 677, 908
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	2 cut(s)	369, 1013
BfaI	CTAG	4 cut(s)	251, 303, 326, 1047
BfuAI	ACCTGC	1 cut(s)	1006
BglI	GCCNNNNNGGC	1 cut(s)	330
BglII	AGATCT	2 cut(s)	568, 959
BisI	GCNGC	4 cut(s)	255, 579, 729, 945
BlsI	GCNGC	4 cut(s)	256, 580, 730, 946
Bme1390I	CCNGG	5 cut(s)	45, 269, 534, 677, 908
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	5 cut(s)	47, 127, 128, 299, 449
BmiI	GGNNCC	7 cut(s)	129, 450, 538, 871, 900, 918, 927
BmrFI	CCNGG	5 cut(s)	45, 269, 534, 677, 908
BmsI	GCATC	6 cut(s)	80, 306, 315, 421, 514, 1057
BpiI	GAAGAC	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	4 cut(s)	43, 355, 388, 907
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 390, 908, 913
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	5 cut(s)	45, 269, 534, 677, 908
BseDI	CCNNGG	4 cut(s)	43, 355, 388, 907
BseGI	GGATG	3 cut(s)	95, 168, 306
BseLI	CCNNNNNNNGG	4 cut(s)	142, 390, 908, 913
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	519, 779
BseSI	GKGCMC	2 cut(s)	131, 997
BseXI	GCAGC	3 cut(s)	565, 715, 931
BseYI	CCCAGC	1 cut(s)	65
BsgI	GTGCAG	2 cut(s)	216, 904
BshFI	GGCC	6 cut(s)	129, 300, 324, 333, 451, 708
BshNI	GGYRCC	2 cut(s)	898, 916
BsiHKAI	GWGCWC	2 cut(s)	224, 997
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	1 cut(s)	815
BslI	CCNNNNNNNGG	4 cut(s)	142, 390, 908, 913
BsmAI	GTCTC	2 cut(s)	369, 1013
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	6 cut(s)	129, 300, 324, 333, 451, 708
Bso31I	GGTCTC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	929
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	131, 224, 997
Bsp143I	GATC	4 cut(s)	568, 925, 959, 973
BspACI	CCGC	2 cut(s)	254, 758
BspANI	GGCC	6 cut(s)	129, 300, 324, 333, 451, 708
BspCNI	CTCAG	1 cut(s)	554
BspLI	GGNNCC	7 cut(s)	129, 450, 538, 871, 900, 918, 927
BspMI	ACCTGC	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	920, 933
BspT107I	GGYRCC	2 cut(s)	898, 916
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	43, 355, 388, 907
BssMI	GATC	4 cut(s)	568, 925, 959, 973
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	5 cut(s)	45, 269, 534, 677, 908
Bst4CI	ACNGT	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	710, 716
BstDEI	CTNAG	1 cut(s)	541
BstENI	CCTNNNNNAGG	1 cut(s)	911
BstF5I	GGATG	3 cut(s)	95, 168, 306
BstHHI	GCGC	2 cut(s)	714, 1003
BstKTI	GATC	4 cut(s)	571, 928, 962, 976
BstMAI	GTCTC	2 cut(s)	369, 1013
BstMBI	GATC	4 cut(s)	568, 925, 959, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 330
BstNI	CCWGG	5 cut(s)	45, 269, 534, 677, 908
BstSCI	CCNGG	5 cut(s)	43, 267, 532, 675, 906
BstSLI	GKGCMC	2 cut(s)	131, 997
BstV1I	GCAGC	3 cut(s)	565, 715, 931
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	3 cut(s)	568, 925, 959
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	3 cut(s)	568, 925, 959
BsuRI	GGCC	6 cut(s)	129, 300, 324, 333, 451, 708
BtsCI	GGATG	3 cut(s)	95, 168, 306
BtsI	GCAGTG	1 cut(s)	892
BtsIMutI	CAGTG	1 cut(s)	892
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	2 cut(s)	710, 716
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	714, 1003
Cfr13I	GGNCC	5 cut(s)	47, 127, 128, 299, 449
Csp6I	GTAC	3 cut(s)	796, 899, 987
CviQI	GTAC	3 cut(s)	796, 899, 987
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	4 cut(s)	570, 927, 961, 975
DpnII	GATC	4 cut(s)	568, 925, 959, 973
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	969, 1025
Eco88I	CYCGRG	1 cut(s)	929
EcoNI	CCTNNNNNAGG	1 cut(s)	911
EcoO109I	RGGNCCY	3 cut(s)	47, 127, 128
EcoRII	CCWGG	5 cut(s)	43, 267, 532, 675, 906
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	1072
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	388
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FauI	CCCGC	1 cut(s)	751
FauNDI	CATATG	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	4 cut(s)	255, 579, 729, 945
FokI	GGATG	3 cut(s)	102, 175, 293
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	255, 579, 729, 945
FspBI	CTAG	4 cut(s)	251, 303, 326, 1047
GlaI	GCGC	2 cut(s)	713, 1002
GluI	GCNGC	4 cut(s)	255, 579, 729, 945
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	6 cut(s)	129, 300, 324, 333, 451, 708
HapII	CCGG	1 cut(s)	815
HhaI	GCGC	2 cut(s)	714, 1003
Hin6I	GCGC	2 cut(s)	712, 1001
HinP1I	GCGC	2 cut(s)	712, 1001
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	5 cut(s)	59, 77, 97, 380, 672
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	4 cut(s)	512, 598, 661, 773
Hpy166II	GTNNAC	3 cut(s)	750, 995, 1060
Hpy188I	TCNGA	4 cut(s)	58, 76, 544, 978
Hpy188III	TCNNGA	7 cut(s)	281, 419, 566, 640, 929, 1018, 1047
Hpy8I	GTNNAC	3 cut(s)	750, 995, 1060
HpyAV	CCTTC	4 cut(s)	80, 323, 907, 947
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 330
HpyF3I	CTNAG	1 cut(s)	541
HpySE526I	ACGT	1 cut(s)	798
HspAI	GCGC	2 cut(s)	712, 1001
KpnI	GGTACC	1 cut(s)	902
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	4 cut(s)	568, 925, 959, 973
LmnI	GCTCC	3 cut(s)	124, 532, 869
Lsp1109I	GCAGC	3 cut(s)	565, 715, 931
LweI	GCATC	6 cut(s)	80, 306, 315, 421, 514, 1057
MaeI	CTAG	4 cut(s)	251, 303, 326, 1047
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	2 cut(s)	604, 775
MalI	GATC	4 cut(s)	570, 927, 961, 975
MboI	GATC	4 cut(s)	568, 925, 959, 973
MboII	GAAGA	3 cut(s)	269, 962, 1018
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	3 cut(s)	568, 925, 959
MhlI	GDGCHC	3 cut(s)	131, 224, 997
MluCI	AATT	5 cut(s)	105, 150, 476, 737, 818
MlyI	GAGTC	3 cut(s)	68, 389, 681
MmeI	TCCRAC	3 cut(s)	408, 649, 903
Mph1103I	ATGCAT	1 cut(s)	1072
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	878
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	5 cut(s)	45, 269, 534, 677, 908
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	5 cut(s)	45, 269, 534, 677, 908
MwoI	GCNNNNNNNGC	2 cut(s)	254, 330
NdeI	CATATG	1 cut(s)	440
NdeII	GATC	4 cut(s)	568, 925, 959, 973
NlaIV	GGNNCC	7 cut(s)	129, 450, 538, 871, 900, 918, 927
NmuCI	GTSAC	2 cut(s)	604, 775
NsiI	ATGCAT	1 cut(s)	1072
PaqCI	CACCTGC	1 cut(s)	1006
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	77, 97
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	256, 580, 730, 946
PleI	GAGTC	3 cut(s)	67, 388, 680
PpsI	GAGTC	3 cut(s)	67, 388, 680
Ppu21I	YACGTR	1 cut(s)	799
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	5 cut(s)	43, 267, 532, 675, 906
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	5 cut(s)	43, 267, 532, 675, 906
PspN4I	GGNNCC	7 cut(s)	129, 450, 538, 871, 900, 918, 927
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	5 cut(s)	47, 127, 128, 299, 449
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	3 cut(s)	568, 925, 959
RsaI	GTAC	3 cut(s)	797, 900, 988
RsaNI	GTAC	3 cut(s)	796, 899, 987
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	255, 579, 729, 945
Sau3AI	GATC	4 cut(s)	568, 925, 959, 973
Sau96I	GGNCC	5 cut(s)	47, 127, 128, 299, 449
SchI	GAGTC	3 cut(s)	68, 389, 681
ScrFI	CCNGG	5 cut(s)	45, 269, 534, 677, 908
SduI	GDGCHC	3 cut(s)	131, 224, 997
SfaNI	GCATC	6 cut(s)	80, 306, 315, 421, 514, 1057
SfiI	GGCCNNNNNGGCC	1 cut(s)	330
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	878
Sse9I	AATT	5 cut(s)	105, 150, 476, 737, 818
SsiI	CCGC	2 cut(s)	254, 758
SspMI	CTAG	4 cut(s)	251, 303, 326, 1047
StyD4I	CCNGG	5 cut(s)	43, 267, 532, 675, 906
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	2 cut(s)	288, 1017
TasI	AATT	5 cut(s)	105, 150, 476, 737, 818
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	77, 97
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	2 cut(s)	604, 775
TseI	GCWGC	3 cut(s)	578, 728, 944
Tsp45I	GTSAC	2 cut(s)	604, 775
TspDTI	ATGAA	3 cut(s)	231, 561, 858
TspRI	CASTG	1 cut(s)	892
VneI	GTGCAC	1 cut(s)	993
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	911
XapI	RAATTY	2 cut(s)	105, 737
XbaI	TCTAGA	1 cut(s)	1046
XmiI	GTMKAC	1 cut(s)	1059
XspI	CTAG	4 cut(s)	251, 303, 326, 1047
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.