Rroxscaffold_2G00095910

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013813
Physical Location & Seq
Reverse (-)
17236084 .. 17237812
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095910.1

Sequence Viewer

Length: 1050 bp
ATGGCAAACTTGTTGATTCCTTGGCTATTTTTAGTTCAAACACTAACAGTTGTTGCCAAATCCAGAGCTAAAGTTCCAGCAGTCATAGTGTTTGGAGATTCCTCCGTTGATTCAGGTAACAACAACTTCATTCCAACAATTGCCAGGAGCAACTTTCCACCTTATGGTCAAGATTTTCCGGGAGGCCAAGCCACTGGGCGGTTCTGCAATGGCCGAATTCCTCCTGACTTGATCTCCGAAGCTCTAGGCCTCAAGCCAACCATACCTGCATACTTGGATCCAATGTATAGCATCTCAGATTTTGCTGTAGGAGTTTGCTTTGCTTCTGCAGGGACTGGCTATGATAATGCCACTTCTGAAGTTGCTGATGTGATTCCATTGTGGAAGGAAGTGGAGTATTACAAGGAGTACCAGCAGAAATTAAAAGCCTACCTTGGAGATAGGAAGGCAAAGAAAATACTAAGTGAGGCTTTGTATTTGATTAGCTTAGGAACAAATGACTTCATGGAAAACTATTATACACTCCCAAACCGACGATTGCAGTTTACCGTGAAGCAATATCAGGATTTTATTATAGGACTTGCTGCAGATTTTGTGAAGACAATATATTCTTTAGGGGCAAGGAAGATGTCCCTGACAGGGGTTCCTCCAATGGGGTGTTTGCCACTGGAAAGAGCAACAAATATTATGGAAGACCATGCTTGTATGGAGGAATACAACAACGTCGGTTTGGAATTTAATGGCAAGTTAAAGGGTTTGGTGGCAAAGCTGAACAGGGAGCTTCCTGGTCTTGATGCGGTATTTGCAGATGCATATAACCTCTTGTTGCAAGTCATAAAAAGGCCTTCTGTTTATGGATTTGAGGAATCAAGAACTGGGTGCTGCGGCACAGGGACGTTTGAGATGGGTTTCCTATGTGATCCGCATAGTCCATTTACATGCCAAGATGCAGATAAGTATGTGTTTTGGGATGCCTTTCATCCTTCGGAGAAAACCAATCGAATGATCACAGATCATCTACTCAAAACTTCTTTGGCAAAGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

349

Amino Acids

38.82

Weight (kDa)

5.89

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 28 - 339 3.3e-34 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42990
fragaria_vesca FvH4_6g38660 FvH4_6g38660
malus_domestica MD09G1148500.v1.1
prunus_persica Prupe.3G177600_v2.0.a1
pyrus_communis pycom09g06820
rosa_chinensis RchiOBHm_Chr2g0152121
rosa_laevigata RLG00000020610
rosa_multiflora Rmu_sc0000760.1_g000001 Rmu_sc0003043.1_g000023
rosa_roxburghii Rroxscaffold_2G00095910
rosa_rugosa Rorug02G0431200
rosa_samantha Rh2AG492000 Rh2BG504500 Rh2CG478500 Rh2DG515800
rosa_wichuraiana Rw2G040440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 4 cut(s) 199, 797, 885, 923
AclWI GGATC 3 cut(s) 272, 285, 914
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 216, 734
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 5 cut(s) 164, 198, 639, 640, 653
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 2 cut(s) 143, 784
AluBI AGCT 5 cut(s) 68, 242, 486, 769, 781
AluI AGCT 5 cut(s) 68, 242, 486, 769, 781
AlwI GGATC 3 cut(s) 272, 285, 914
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 4 cut(s) 184, 211, 247, 842
ApeKI GCWGC 2 cut(s) 584, 882
ApoI RAATTY 2 cut(s) 216, 734
AsuC2I CCSGG 1 cut(s) 180
BamHI GGATCC 1 cut(s) 277
BbsI GAAGAC 2 cut(s) 605, 699
BbvI GCAGC 2 cut(s) 571, 869
BccI CCATC 1 cut(s) 898
BciT130I CCWGG 2 cut(s) 145, 786
BclI TGATCA 1 cut(s) 1005
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 3 cut(s) 306, 327, 585
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 3 cut(s) 585, 883, 886
BlsI GCNGC 3 cut(s) 586, 884, 887
Bme1390I CCNGG 3 cut(s) 145, 180, 786
BmiI GGNNCC 2 cut(s) 279, 645
BmrFI CCNGG 3 cut(s) 145, 180, 786
BmrI ACTGGG 2 cut(s) 204, 885
BmsI GCATC 5 cut(s) 300, 784, 799, 937, 961
BmuI ACTGGG 2 cut(s) 204, 885
BpiI GAAGAC 2 cut(s) 605, 699
Bpu10I CCTNAGC 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 20, 433
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 198, 639, 640, 653
Bse1I ACTGG 4 cut(s) 199, 340, 672, 880
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 145, 786
BseDI CCNNGG 2 cut(s) 20, 433
BseGI GGATG 2 cut(s) 976, 979
BseLI CCNNNNNNNGG 5 cut(s) 164, 198, 639, 640, 653
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 4 cut(s) 199, 340, 672, 880
BseXI GCAGC 2 cut(s) 571, 869
BshFI GGCC 4 cut(s) 186, 213, 249, 844
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 3 cut(s) 346, 616, 907
BslI CCNNNNNNNGG 5 cut(s) 164, 198, 639, 640, 653
BsmFI GGGAC 3 cut(s) 346, 616, 907
BsnI GGCC 4 cut(s) 186, 213, 249, 844
Bsp143I GATC 5 cut(s) 231, 277, 919, 1005, 1012
BspACI CCGC 4 cut(s) 199, 797, 885, 923
BspANI GGCC 4 cut(s) 186, 213, 249, 844
BspCNI CTCAG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 279, 645
BspMAI CTGCAG 2 cut(s) 331, 589
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 3 cut(s) 272, 285, 914
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 4 cut(s) 199, 340, 672, 880
BssECI CCNNGG 2 cut(s) 20, 433
BssMI GATC 5 cut(s) 231, 277, 919, 1005, 1012
BssT1I CCWWGG 2 cut(s) 20, 433
Bst2UI CCWGG 2 cut(s) 145, 786
Bst4CI ACNGT 2 cut(s) 49, 550
BstDEI CTNAG 3 cut(s) 295, 461, 487
BstF5I GGATG 2 cut(s) 976, 979
BstKTI GATC 5 cut(s) 234, 280, 922, 1008, 1015
BstMBI GATC 5 cut(s) 231, 277, 919, 1005, 1012
BstMWI GCNNNNNNNGC 1 cut(s) 803
BstNI CCWGG 2 cut(s) 145, 786
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 3 cut(s) 143, 178, 784
BstSFI CTRYAG 3 cut(s) 306, 327, 585
BstV1I GCAGC 2 cut(s) 571, 869
BstV2I GAAGAC 2 cut(s) 605, 699
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 4 cut(s) 186, 213, 249, 844
BtsCI GGATG 2 cut(s) 976, 979
BtsIMutI CAGTG 2 cut(s) 192, 665
BveI ACCTGC 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 335
Csp6I GTAC 1 cut(s) 409
CviAII CATG 3 cut(s) 505, 698, 939
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 295, 461, 487
DpnI GATC 5 cut(s) 233, 279, 921, 1007, 1014
DpnII GATC 5 cut(s) 231, 277, 919, 1005, 1012
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 20, 433
Eco147I AGGCCT 2 cut(s) 249, 844
Eco57I CTGAAG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 143, 784
EcoT14I CCWWGG 2 cut(s) 20, 433
EcoT22I ATGCAT 1 cut(s) 814
ErhI CCWWGG 2 cut(s) 20, 433
FaeI CATG 3 cut(s) 508, 701, 942
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 454, 486
FaqI GGGAC 3 cut(s) 346, 616, 907
FatI CATG 3 cut(s) 504, 697, 938
FbaI TGATCA 1 cut(s) 1005
Fnu4HI GCNGC 3 cut(s) 585, 883, 886
FokI GGATG 2 cut(s) 966, 983
Fsp4HI GCNGC 3 cut(s) 585, 883, 886
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 585, 883, 886
HaeIII GGCC 4 cut(s) 186, 213, 249, 844
HapII CCGG 1 cut(s) 179
Hin1II CATG 3 cut(s) 508, 701, 942
HinfI GANTC 5 cut(s) 16, 98, 110, 373, 866
HpaII CCGG 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 4 cut(s) 238, 298, 358, 988
Hpy188III TCNNGA 6 cut(s) 63, 170, 224, 563, 791, 870
Hpy8I GTNNAC 1 cut(s) 546
Hpy99I CGWCG 2 cut(s) 537, 728
HpyAV CCTTC 4 cut(s) 379, 439, 855, 993
HpyCH4III ACNGT 2 cut(s) 49, 550
HpyCH4IV ACGT 2 cut(s) 723, 896
HpyCH4V TGCA 9 cut(s) 207, 269, 329, 541, 587, 806, 812, 829, 950
HpyF10VI GCNNNNNNNGC 1 cut(s) 803
HpyF3I CTNAG 3 cut(s) 295, 461, 487
HpySE526I ACGT 2 cut(s) 723, 896
Hsp92II CATG 3 cut(s) 508, 701, 942
Ksp22I TGATCA 1 cut(s) 1005
Kzo9I GATC 5 cut(s) 231, 277, 919, 1005, 1012
LmnI GCTCC 2 cut(s) 147, 778
Lsp1109I GCAGC 2 cut(s) 571, 869
LweI GCATC 5 cut(s) 300, 784, 799, 937, 961
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 723, 896
MaeIII GTNAC 1 cut(s) 116
MalI GATC 5 cut(s) 233, 279, 921, 1007, 1014
MboI GATC 5 cut(s) 231, 277, 919, 1005, 1012
MboII GAAGA 3 cut(s) 610, 637, 704
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 277
MluCI AATT 4 cut(s) 138, 216, 419, 734
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 9 cut(s) 112, 176, 231, 260, 460, 657, 703, 830, 856
Mph1103I ATGCAT 1 cut(s) 814
MseI TTAA 3 cut(s) 422, 738, 749
MslI CAYNNNNRTG 1 cut(s) 937
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 145, 180, 786
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 2 cut(s) 145, 786
MwoI GCNNNNNNNGC 1 cut(s) 803
NciI CCSGG 1 cut(s) 180
NdeII GATC 5 cut(s) 231, 277, 919, 1005, 1012
NlaIII CATG 3 cut(s) 508, 701, 942
NlaIV GGNNCC 2 cut(s) 279, 645
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 1 cut(s) 942
PceI AGGCCT 2 cut(s) 249, 844
PfeI GAWTC 5 cut(s) 16, 98, 110, 373, 866
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 3 cut(s) 586, 884, 887
Psp6I CCWGG 2 cut(s) 143, 784
PspGI CCWGG 2 cut(s) 143, 784
PspN4I GGNNCC 2 cut(s) 279, 645
PstI CTGCAG 2 cut(s) 331, 589
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 937
SaqAI TTAA 3 cut(s) 422, 738, 749
SatI GCNGC 3 cut(s) 585, 883, 886
Sau3AI GATC 5 cut(s) 231, 277, 919, 1005, 1012
ScrFI CCNGG 3 cut(s) 145, 180, 786
SfaNI GCATC 5 cut(s) 300, 784, 799, 937, 961
SfcI CTRYAG 3 cut(s) 306, 327, 585
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 138, 216, 419, 734
SseBI AGGCCT 2 cut(s) 249, 844
SsiI CCGC 4 cut(s) 199, 797, 885, 923
SspI AATATT 1 cut(s) 685
SspMI CTAG 1 cut(s) 245
StuI AGGCCT 2 cut(s) 249, 844
StyD4I CCNGG 3 cut(s) 143, 178, 784
StyI CCWWGG 2 cut(s) 20, 433
TaaI ACNGT 2 cut(s) 49, 550
TaiI ACGT 2 cut(s) 726, 899
TaqI TCGA 1 cut(s) 1000
TasI AATT 4 cut(s) 138, 216, 419, 734
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 5 cut(s) 16, 98, 110, 373, 866
Tru1I TTAA 3 cut(s) 422, 738, 749
Tru9I TTAA 3 cut(s) 422, 738, 749
TscAI CASTG 2 cut(s) 199, 672
TseI GCWGC 2 cut(s) 584, 882
TspDTI ATGAA 3 cut(s) 118, 493, 968
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 2 cut(s) 199, 672
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 2 cut(s) 216, 734
XceI RCATGY 1 cut(s) 942
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.