Rroxscaffold_2G00120470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009441
Physical Location & Seq
Forward (+)
52732408 .. 52733919
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120470.1

Sequence Viewer

Length: 1074 bp
ATGGATCTTGTGGAAGTGCTGTCTAATCTCCATGCCTTGAGACAATTATATGAACTCCTTCAGAACATCGAAGATGATCTGCAACATATAAATTCAAAGAATGTACACCAAACTTTGGATCTGAAAGCGCGAAAACTCTTCAGACACCTCTTGGATGATGCTACTGAGAAAATGTTCCATACTCAATCAAAGACCATAGAAGCACAGTCAGTTTTCCAGACGGCACCCAGCTCTTCTAAACTAGAGCAACCAAAGCCATTGCCTAAGTTGCAATCTCCTCTTTCACCAGATGCAGTCAATTCTTCTCTAAATGTTGTCCTGAGCAATGAAAAGGATTCTAAAAGCAGTGTAATCACATCAAAAAAGGATGAGCAGTATCCAGTGAAGCGTCAGAGTGCAATTTCCGGGTCTAAAGTAAGCACCTCATCAGACGTACCTCAATACAAAAAGAAACGGTGCCGCGCCTGCATAGCAAAAGAAATGAAGAAACAGTACTCAACCAAGGAGGCAACGATGTCCAATGAGCGAGCCGAGGTACCAGGCAAAAACAGTGGGGATCAAGATCAGCAACGTGACTGGGGCAGTGGCAGTGTCAGTTGTGTTGATGACCAAGCTAAAAGATTTCAAGAATCCAATAGCAAGACCATAGAGAGAGAGAACTCTATAGGTGAGACTCTTCCCTCATCAGTCTCTTTAACAACCGGAGCCGGCAAGCAAGAAGTTGAGTATATCCCAATTGGTCAAATGAAGAAAAAGTTAGATGAGGGTAATGATATCGCTAAAGTGGTAATAAATGCAATCAGAGAAATTGAGTCCTGCATTTTGGCTTTGCAGTTGAGTTCTGATTTAGCACATTCTGCTATCGATAATGATGTTGATGAACATGTTCCCTTCAAGCTTGGCATTTCAGTTAGTCCTGTAGAACACAGAAAAGAAGAGGAGGCCGTTACCAGACAAGAGCTGAGTCAGACGCATGTGGGAGAGTCTTTATTGGGGGAGCTGGAACAAGTCAACTGTCTCAAACGGATGGGAAGTTTGCTGAATCTGTTTCTAGGGGACAAGGCTCCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

39.67

Weight (kDa)

6.11

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 535
AccB1I GGYRCC 3 cut(s) 223, 456, 535
AccB7I CCANNNNNTGG 1 cut(s) 115
AccII CGCG 2 cut(s) 130, 462
AciI CCGC 1 cut(s) 460
AclWI GGATC 3 cut(s) 12, 126, 564
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 2 cut(s) 44, 124
AfaI GTAC 4 cut(s) 105, 435, 494, 537
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 883
AgsI TTSAA 3 cut(s) 96, 626, 895
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 5 cut(s) 231, 614, 898, 961, 1000
AluI AGCT 5 cut(s) 231, 614, 898, 961, 1000
Alw26I GTCTC 4 cut(s) 34, 665, 694, 1022
AlwI GGATC 3 cut(s) 12, 126, 564
AoxI GGCC 1 cut(s) 942
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 3 cut(s) 57, 173, 885
Asp718I GGTACC 1 cut(s) 535
AspLEI GCGC 2 cut(s) 130, 464
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 276, 680
BanI GGYRCC 3 cut(s) 223, 456, 535
BarI GAAGNNNNNNTAC 2 cut(s) 476, 508
BccI CCATC 1 cut(s) 1021
BceAI ACGGC 2 cut(s) 237, 929
BciT130I CCWGG 1 cut(s) 540
BciVI GTATCC 1 cut(s) 387
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 34, 665, 694, 1022
BfaI CTAG 3 cut(s) 242, 1052, 1072
BfmI CTRYAG 2 cut(s) 663, 918
BfuI GTATCC 1 cut(s) 387
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
BmcAI AGTACT 1 cut(s) 494
Bme1390I CCNGG 2 cut(s) 406, 540
BmiI GGNNCC 5 cut(s) 225, 458, 537, 706, 1065
BmrFI CCNGG 2 cut(s) 406, 540
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 2 cut(s) 148, 280
BmuI ACTGGG 1 cut(s) 586
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 864
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 501, 531
BsaWI WCCGGW 1 cut(s) 701
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 380, 581
Bse3DI GCAATG 2 cut(s) 257, 331
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 864
BseDI CCNNGG 2 cut(s) 501, 531
BseGI GGATG 3 cut(s) 160, 373, 1032
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 2 cut(s) 257, 331
BseMII CTCAG 3 cut(s) 156, 311, 953
BseNI ACTGG 2 cut(s) 380, 581
BseRI GAGGAG 2 cut(s) 267, 953
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 130, 462
BshFI GGCC 1 cut(s) 944
BshNI GGYRCC 3 cut(s) 223, 456, 535
BshVI ATCGAT 1 cut(s) 864
BsiSI CCGG 3 cut(s) 405, 702, 708
BslFI GGGAC 1 cut(s) 1070
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 4 cut(s) 34, 665, 694, 1022
BsmFI GGGAC 1 cut(s) 1070
BsnI GGCC 1 cut(s) 944
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 5 cut(s) 4, 76, 118, 556, 562
BspACI CCGC 1 cut(s) 460
BspANI GGCC 1 cut(s) 944
BspCNI CTCAG 3 cut(s) 157, 312, 954
BspDI ATCGAT 1 cut(s) 864
BspFNI CGCG 2 cut(s) 130, 462
BspLI GGNNCC 5 cut(s) 225, 458, 537, 706, 1065
BspPI GGATC 3 cut(s) 12, 126, 564
BspQI GCTCTTC 1 cut(s) 238
BspT107I GGYRCC 3 cut(s) 223, 456, 535
BsrDI GCAATG 2 cut(s) 257, 331
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 2 cut(s) 380, 581
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 501, 531
BssMI GATC 5 cut(s) 4, 76, 118, 556, 562
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 5 cut(s) 207, 456, 492, 551, 1016
Bst6I CTCTTC 4 cut(s) 143, 238, 681, 930
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 103
BstC8I GCNNGC 4 cut(s) 466, 528, 709, 713
BstDEI CTNAG 4 cut(s) 165, 264, 320, 962
BstF5I GGATG 3 cut(s) 160, 373, 1032
BstFNI CGCG 2 cut(s) 130, 462
BstHHI GCGC 2 cut(s) 130, 464
BstKTI GATC 5 cut(s) 7, 79, 121, 559, 565
BstMAI GTCTC 4 cut(s) 34, 665, 694, 1022
BstMBI GATC 5 cut(s) 4, 76, 118, 556, 562
BstMWI GCNNNNNNNGC 5 cut(s) 253, 268, 465, 470, 857
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 2 cut(s) 887, 977
BstSCI CCNGG 2 cut(s) 404, 538
BstSFI CTRYAG 2 cut(s) 663, 918
BstUI CGCG 2 cut(s) 130, 462
BstX2I RGATCY 2 cut(s) 4, 118
BstYI RGATCY 2 cut(s) 4, 118
Bsu15I ATCGAT 1 cut(s) 864
BsuI GTATCC 1 cut(s) 387
BsuRI GGCC 1 cut(s) 944
BsuTUI ATCGAT 1 cut(s) 864
BtsCI GGATG 3 cut(s) 160, 373, 1032
BtsI GCAGTG 3 cut(s) 352, 589, 595
BtsIMutI CAGTG 5 cut(s) 352, 387, 556, 589, 595
Cac8I GCNNGC 4 cut(s) 466, 528, 709, 713
CfoI GCGC 2 cut(s) 130, 464
Cfr10I RCCGGY 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 864
CseI GACGC 2 cut(s) 377, 979
Csp6I GTAC 4 cut(s) 104, 434, 493, 536
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 3 cut(s) 32, 884, 974
CviQI GTAC 4 cut(s) 104, 434, 493, 536
DdeI CTNAG 4 cut(s) 165, 264, 320, 962
DpnI GATC 5 cut(s) 6, 78, 120, 558, 564
DpnII GATC 5 cut(s) 4, 76, 118, 556, 562
Eam1104I CTCTTC 4 cut(s) 143, 238, 681, 930
EarI CTCTTC 4 cut(s) 143, 238, 681, 930
Eco130I CCWWGG 1 cut(s) 501
Eco32I GATATC 1 cut(s) 775
Eco57I CTGAAG 2 cut(s) 44, 124
EcoRII CCWGG 1 cut(s) 538
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 3 cut(s) 35, 887, 977
FaqI GGGAC 1 cut(s) 1070
FatI CATG 3 cut(s) 31, 883, 973
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 3 cut(s) 167, 380, 1039
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 3 cut(s) 242, 1052, 1072
GlaI GCGC 2 cut(s) 129, 463
GluI GCNGC 1 cut(s) 460
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 944
HapII CCGG 3 cut(s) 405, 702, 708
HgaI GACGC 2 cut(s) 377, 979
HhaI GCGC 2 cut(s) 130, 464
Hin1II CATG 3 cut(s) 35, 887, 977
Hin6I GCGC 2 cut(s) 128, 462
HinP1I GCGC 2 cut(s) 128, 462
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 7 cut(s) 335, 629, 673, 812, 964, 983, 1042
HpaII CCGG 3 cut(s) 405, 702, 708
HphI GGTGA 2 cut(s) 276, 680
Hpy166II GTNNAC 2 cut(s) 106, 1012
Hpy188I TCNGA 8 cut(s) 63, 123, 143, 393, 430, 803, 844, 969
Hpy188III TCNNGA 4 cut(s) 217, 319, 560, 626
Hpy8I GTNNAC 2 cut(s) 106, 1012
HpyAV CCTTC 2 cut(s) 68, 901
HpyCH4III ACNGT 5 cut(s) 207, 456, 492, 551, 1016
HpyCH4IV ACGT 2 cut(s) 432, 571
HpyCH4V TGCA 8 cut(s) 82, 271, 293, 398, 468, 797, 819, 832
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 268, 465, 470, 857
HpyF3I CTNAG 4 cut(s) 165, 264, 320, 962
HpySE526I ACGT 2 cut(s) 432, 571
Hsp92II CATG 3 cut(s) 35, 887, 977
HspAI GCGC 2 cut(s) 128, 462
KpnI GGTACC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 5 cut(s) 4, 76, 118, 556, 562
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 704, 997, 1069
LweI GCATC 2 cut(s) 148, 280
MaeI CTAG 3 cut(s) 242, 1052, 1072
MaeII ACGT 2 cut(s) 432, 571
MaeIII GTNAC 2 cut(s) 572, 946
MalI GATC 5 cut(s) 6, 78, 120, 558, 564
MboI GATC 5 cut(s) 4, 76, 118, 556, 562
MboII GAAGA 8 cut(s) 83, 130, 225, 294, 496, 668, 760, 947
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 2 cut(s) 4, 118
MluCI AATT 6 cut(s) 44, 91, 298, 399, 735, 807
MlyI GAGTC 4 cut(s) 667, 821, 973, 992
MroNI GCCGGC 1 cut(s) 707
MroXI GAANNNNTTC 3 cut(s) 57, 173, 885
MseI TTAA 1 cut(s) 695
MspI CCGG 3 cut(s) 405, 702, 708
MspR9I CCNGG 2 cut(s) 406, 540
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 2 cut(s) 130, 462
MwoI GCNNNNNNNGC 5 cut(s) 253, 268, 465, 470, 857
NaeI GCCGGC 1 cut(s) 709
NciI CCSGG 1 cut(s) 406
NdeII GATC 5 cut(s) 4, 76, 118, 556, 562
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 3 cut(s) 35, 887, 977
NlaIV GGNNCC 5 cut(s) 225, 458, 537, 706, 1065
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 2 cut(s) 887, 977
PciI ACATGT 1 cut(s) 883
PciSI GCTCTTC 1 cut(s) 238
PdiI GCCGGC 1 cut(s) 709
PdmI GAANNNNTTC 3 cut(s) 57, 173, 885
PfeI GAWTC 3 cut(s) 335, 629, 1042
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 4 cut(s) 667, 820, 972, 991
PpsI GAGTC 4 cut(s) 667, 820, 972, 991
PscI ACATGT 1 cut(s) 883
Psp6I CCWGG 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 5 cut(s) 225, 458, 537, 706, 1065
PsuI RGATCY 2 cut(s) 4, 118
RsaI GTAC 4 cut(s) 105, 435, 494, 537
RsaNI GTAC 4 cut(s) 104, 434, 493, 536
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 695
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 5 cut(s) 4, 76, 118, 556, 562
ScaI AGTACT 1 cut(s) 494
SchI GAGTC 4 cut(s) 667, 821, 973, 992
ScrFI CCNGG 2 cut(s) 406, 540
SfaNI GCATC 2 cut(s) 148, 280
SfcI CTRYAG 2 cut(s) 663, 918
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 6 cut(s) 44, 91, 298, 399, 735, 807
SsiI CCGC 1 cut(s) 460
SspMI CTAG 3 cut(s) 242, 1052, 1072
StyD4I CCNGG 2 cut(s) 404, 538
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 5 cut(s) 207, 456, 492, 551, 1016
TaiI ACGT 2 cut(s) 435, 574
TaqI TCGA 2 cut(s) 69, 864
TasI AATT 6 cut(s) 44, 91, 298, 399, 735, 807
TatI WGTACW 2 cut(s) 103, 492
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 3 cut(s) 335, 629, 1042
Tru1I TTAA 1 cut(s) 695
Tru9I TTAA 1 cut(s) 695
TscAI CASTG 5 cut(s) 352, 387, 556, 589, 595
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 5 cut(s) 66, 342, 497, 761, 894
TspGWI ACGGA 1 cut(s) 1039
TspRI CASTG 5 cut(s) 352, 387, 556, 589, 595
Van91I CCANNNNNTGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 91
XceI RCATGY 2 cut(s) 887, 977
XmnI GAANNNNTTC 3 cut(s) 57, 173, 885
XspI CTAG 3 cut(s) 242, 1052, 1072
ZrmI AGTACT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.