Rorug02G0246900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009441
Physical Location & Seq
Forward (+)
25710745 .. 25713766
3022 bp
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UTR
Exon/CDS
Intron
Rorug02G0246900.1

Sequence Viewer

Length: 279 bp
ATGCACCGACTCTTGCCTCTGCACGCGACCCTCCAATCCACGATGCTGCTGCTCCCTTACCTTCGTCGATTTTTGGCCGCCATCTCGCAACACCTCCACCACCGCTTTGATTCAATTTCTGAACTGCTGGTCAATGTTACAAAGCATGTTTTACAGCCAAAGTATGAGATACTTACGGCTGAAGAAAAGAAACATCTGCTAAGGAAGTACAAGTTGGAAGACAAGAAGATCGAGCAACCACTTATGAGAAATTTTGTATCAAACTGCTCAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.98

Weight (kDa)

9.93

Isoelectric Point (pI)

67.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb5_C PF01191 44 - 77 6.8e-09 RNA polymerase Rpb5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 78, 103
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 46, 49
ApoI RAATTY 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 33, 36
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BisI GCNGC 3 cut(s) 47, 50, 78
BlsI GCNGC 3 cut(s) 48, 51, 79
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 253
BseXI GCAGC 2 cut(s) 33, 36
BsgI GTGCAG 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 2 cut(s) 78, 103
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 26
BssMI GATC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 149
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 33, 36
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 77, 157, 179, 274
CviKI_1 RGCY 4 cut(s) 77, 157, 179, 274
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 147, 165, 245
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 47, 50, 78
Fsp4HI GCNGC 3 cut(s) 47, 50, 78
GluI GCNGC 3 cut(s) 47, 50, 78
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 149
HinfI GANTC 2 cut(s) 9, 110
Hpy188I TCNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 4, 22
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 33, 36
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 194, 230, 238
MluCI AATT 2 cut(s) 114, 250
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 27, 41, 104
MvnI CGCG 1 cut(s) 26
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 149
NspI RCATGY 1 cut(s) 149
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 48, 51, 79
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 3 cut(s) 47, 50, 78
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 1 cut(s) 3
SetI ASST 2 cut(s) 63, 96
SfaNI GCATC 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 114, 250
SsiI CCGC 2 cut(s) 78, 103
TaqI TCGA 2 cut(s) 67, 231
TasI AATT 2 cut(s) 114, 250
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 110
TseI GCWGC 2 cut(s) 46, 49
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.