Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009441

Physical Location & Seq

Genomic Coordinates Forward (+)

52733979 .. 52735076

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGAGTTATATTAACGGGCTAAGAGTCTCACCAAGTCCAAATGAGGTTAATTTGAAGCCTCCTCTGCAGTTGAAGACCTTTGCTACCCCTGTTCAAAAATCCGAAACTAGTCTAGTTCTAAATCAAACGGCTAAAAAAGGGACTTCAAGATATAATTCGTCCACGGTATCTTCAGTTAGAGGTGGGCTTGGTAGAAAGTCGAGTCAGAGGACAAGACTCAAGAATGAAAAGGGACATGTTCAGCCAGTATTTTTAGATGATCGCAAGCCAAGTAAGAGAACAAGGACCCATCAGATGTCTTACGTAGGCTCAGGGAAGAAGATCATGCTACGTCAGAAACTGTCGGAGGAGGAGACTAGCAGCTCAACTTCTCATAGTTCGTCAATGTGGACAAGTAAGCAAAACGAAAGCAGTGCAAGTAGCTGTAGCAATTATTCCAAGGAATCTTGGAGTCCAAGAAATAATGTTTTTTCCGAAAGCGAAAGTAAGGAATCTTGGAGTCCAAGAAATGATGATTTTTCCGAAAGTGGAAGTAATTCGCAGGAGAGTGTAAGTAGTAGCTGTCGCTCGTCGGAGGAGCATAGAAGTAGATTGACAGATTCTGTAGAGAGTGACTATAGCAGTAAAAAATATCCGGAGAAATCTATTGGAAGGTTAAGAAAGATCAAGAACAGGTTGGGACTCATCTTTCACCACCATCACCACCATCATCATCACCATCACCATCATCGCAATGATCGTTCTACGTGGAAGAAGGTACAGAAAATGTTTCGCCACAAAGACAAGCATGTCACTAATGATCATGGTCATGGAGAAGGGTTCAAAAAATCACTAGCAGTGAAAAACATGTCAACTATGAACCAGGGTGGGCATTTTCATGCACTCGTGAAAGGGCTGATGAGACATGTTAAGCATTCAAAGAAGTCGAAGGGTGGGATCAGACCTCCTCGGCCTCATGGCCTCAATAAGAAGAAGGTCGTGAACAAGTTGCATTGGTGGCAGACTGTTCGACGTGGTGGAGTAAAGCTGCCTAAAAGAGGGCGTGTAAAAGTAGGATTTGCCAATAAAAGACCAAAACTACAAATGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0007275 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.7

Weight (kDa)

10.75

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63720
fragaria_vesca	FvH4_1g25520 FvH4_1g25520 FvH4_1g25520 FvH4_1g25520 FvH4_1g25520 FvH4_1g25520 FvH4_1g25520 FvH4_5g34270 FvH4_5g34280
malus_domestica	MD15G1138700.v1.1
pyrus_communis	pycom15g12540
rosa_laevigata	RLG00000018766
rosa_multiflora	Rmu_sc0004915.1_g000015
rosa_roxburghii	Rroxscaffold_2G00120470 Rroxscaffold_2G00120480
rosa_rugosa	Rorug02G0246900
rosa_samantha	Rh2AG306000 Rh2BG314000 Rh2CG292300 Rh2DG329800
rosa_wichuraiana	Rw2G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	791
AccIII	TCCGGA	1 cut(s)	637
AclWI	GGATC	1 cut(s)	947
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	1040
AflIII	ACRYGT	3 cut(s)	238, 849, 907
AgsI	TTSAA	6 cut(s)	58, 76, 98, 150, 826, 921
AhlI	ACTAGT	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	1016
AjnI	CCWGG	1 cut(s)	864
AluBI	AGCT	4 cut(s)	366, 426, 564, 1030
AluI	AGCT	4 cut(s)	366, 426, 564, 1030
Alw26I	GTCTC	3 cut(s)	34, 350, 898
AlwI	GGATC	1 cut(s)	947
AlwNI	CAGNNNCTG	2 cut(s)	343, 605
Aor13HI	TCCGGA	1 cut(s)	637
AoxI	GGCC	2 cut(s)	953, 961
ApeKI	GCWGC	2 cut(s)	363, 1030
Asp700I	GAANNNNTTC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	5 cut(s)	24, 686, 695, 710, 716
AvaII	GGWCC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	887
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	375, 1017
BccI	CCATC	5 cut(s)	300, 708, 717, 729, 735
BceAI	ACGGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	4 cut(s)	398, 432, 992, 1026
BciT130I	CCWGG	1 cut(s)	866
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	3 cut(s)	34, 350, 898
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	4 cut(s)	111, 116, 360, 836
BfmI	CTRYAG	4 cut(s)	68, 427, 606, 619
BisI	GCNGC	2 cut(s)	364, 1031
BlsI	GCNGC	2 cut(s)	365, 1032
Bme1390I	CCNGG	1 cut(s)	866
Bme18I	GGWCC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	866
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	2 cut(s)	307, 750
BsaJI	CCNNGG	4 cut(s)	165, 441, 865, 950
BsaWI	WCCGGW	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	1 cut(s)	1040
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	742
BseAI	TCCGGA	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	165, 441, 865, 950
BseLI	CCNNNNNNNGG	1 cut(s)	1040
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	5 cut(s)	54, 365, 368, 593, 939
BseXI	GCAGC	2 cut(s)	375, 1017
BshFI	GGCC	2 cut(s)	955, 963
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	3 cut(s)	157, 249, 696
BslI	CCNNNNNNNGG	1 cut(s)	1040
BsmAI	GTCTC	3 cut(s)	34, 350, 898
BsmFI	GGGAC	3 cut(s)	157, 249, 696
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	2 cut(s)	955, 963
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
BspANI	GGCC	2 cut(s)	955, 963
BspCNI	CTCAG	1 cut(s)	326
BspEI	TCCGGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	290
BspMAI	CTGCAG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	165, 441, 865, 950
BssMI	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
BssSI	CACGAG	1 cut(s)	887
BssT1I	CCWWGG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	887
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	3 cut(s)	169, 345, 1009
Bst6I	CTCTTC	1 cut(s)	1085
BstBAI	YACGTR	2 cut(s)	307, 750
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	23, 313
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstKTI	GATC	6 cut(s)	265, 327, 669, 742, 805, 942
BstMAI	GTCTC	3 cut(s)	34, 350, 898
BstMBI	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 1000
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	4 cut(s)	242, 794, 853, 911
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	4 cut(s)	68, 427, 606, 619
BstSNI	TACGTA	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	375, 1017
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	955, 963
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	716
BtrI	CACGTC	1 cut(s)	1016
BtsI	GCAGTG	2 cut(s)	421, 846
BtsIMutI	CAGTG	2 cut(s)	421, 846
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	2 cut(s)	343, 605
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	761
CviAII	CATG	9 cut(s)	239, 328, 791, 806, 812, 850, 881, 908, 959
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	2 cut(s)	23, 313
DpnI	GATC	6 cut(s)	264, 326, 668, 741, 804, 941
DpnII	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
Eco105I	TACGTA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	864
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	9 cut(s)	242, 331, 794, 809, 815, 853, 884, 911, 962
FaqI	GGGAC	3 cut(s)	157, 249, 696
FatI	CATG	9 cut(s)	238, 327, 790, 805, 811, 849, 880, 907, 958
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	364, 1031
Fsp4HI	GCNGC	2 cut(s)	364, 1031
FspBI	CTAG	4 cut(s)	111, 116, 360, 836
GluI	GCNGC	2 cut(s)	364, 1031
HaeIII	GGCC	2 cut(s)	955, 963
HapII	CCGG	1 cut(s)	638
Hin1II	CATG	9 cut(s)	242, 331, 794, 809, 815, 853, 884, 911, 962
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	9 cut(s)	27, 205, 219, 446, 454, 494, 502, 602, 684
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	5 cut(s)	24, 686, 695, 710, 716
Hpy166II	GTNNAC	4 cut(s)	165, 393, 855, 985
Hpy188I	TCNGA	9 cut(s)	106, 210, 297, 339, 349, 478, 526, 577, 944
Hpy188III	TCNNGA	6 cut(s)	150, 223, 638, 670, 889, 982
Hpy8I	GTNNAC	4 cut(s)	165, 393, 855, 985
Hpy99I	CGWCG	2 cut(s)	577, 1017
HpyAV	CCTTC	5 cut(s)	648, 751, 812, 925, 970
HpyCH4III	ACNGT	3 cut(s)	169, 345, 1009
HpyCH4IV	ACGT	4 cut(s)	306, 334, 749, 1015
HpyCH4V	TGCA	4 cut(s)	70, 419, 884, 994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 1000
HpyF3I	CTNAG	2 cut(s)	23, 313
HpySE526I	ACGT	4 cut(s)	306, 334, 749, 1015
Hsp92II	CATG	9 cut(s)	242, 331, 794, 809, 815, 853, 884, 911, 962
Kpn2I	TCCGGA	1 cut(s)	637
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	8 cut(s)	105, 261, 300, 530, 651, 661, 851, 878
Lsp1109I	GCAGC	2 cut(s)	375, 1017
MaeI	CTAG	4 cut(s)	111, 116, 360, 836
MaeII	ACGT	4 cut(s)	306, 334, 749, 1015
MaeIII	GTNAC	2 cut(s)	614, 793
MalI	GATC	6 cut(s)	264, 326, 668, 741, 804, 941
MboI	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
MboII	GAAGA	6 cut(s)	88, 165, 331, 334, 766, 985
MluCI	AATT	4 cut(s)	52, 157, 433, 538
MlyI	GAGTC	6 cut(s)	36, 213, 214, 463, 511, 678
MmeI	TCCRAC	2 cut(s)	327, 555
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	4 cut(s)	15, 51, 659, 912
MslI	CAYNNNNRTG	3 cut(s)	735, 810, 879
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	866
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	2 cut(s)	67, 1000
NdeII	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
NlaIII	CATG	9 cut(s)	242, 331, 794, 809, 815, 853, 884, 911, 962
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	2 cut(s)	614, 793
NspI	RCATGY	4 cut(s)	242, 794, 853, 911
PciI	ACATGT	3 cut(s)	238, 849, 907
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PctI	GAATGC	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	446, 494, 602
PkrI	GCNGC	2 cut(s)	365, 1032
PleI	GAGTC	6 cut(s)	35, 213, 213, 462, 510, 678
PpsI	GAGTC	6 cut(s)	35, 213, 213, 462, 510, 678
Ppu21I	YACGTR	2 cut(s)	307, 750
PpuMI	RGGWCCY	1 cut(s)	288
PscI	ACATGT	3 cut(s)	238, 849, 907
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	288
PspPPI	RGGWCCY	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	72
PstNI	CAGNNNCTG	2 cut(s)	343, 605
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
RseI	CAYNNNNRTG	3 cut(s)	735, 810, 879
SaqAI	TTAA	4 cut(s)	15, 51, 659, 912
SatI	GCNGC	2 cut(s)	364, 1031
Sau3AI	GATC	6 cut(s)	262, 324, 666, 739, 802, 939
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	6 cut(s)	36, 213, 214, 463, 511, 678
ScrFI	CCNGG	1 cut(s)	866
SfcI	CTRYAG	4 cut(s)	68, 427, 606, 619
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	3 cut(s)	735, 810, 879
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	4 cut(s)	52, 157, 433, 538
SspMI	CTAG	4 cut(s)	111, 116, 360, 836
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	169, 345, 1009
TaiI	ACGT	4 cut(s)	309, 337, 752, 1018
TaqI	TCGA	3 cut(s)	203, 929, 1012
TasI	AATT	4 cut(s)	52, 157, 433, 538
TfiI	GAWTC	3 cut(s)	446, 494, 602
Tru1I	TTAA	4 cut(s)	15, 51, 659, 912
Tru9I	TTAA	4 cut(s)	15, 51, 659, 912
TscAI	CASTG	2 cut(s)	421, 846
TseFI	GTSAC	2 cut(s)	614, 793
TseI	GCWGC	2 cut(s)	363, 1030
Tsp45I	GTSAC	2 cut(s)	614, 793
TspDTI	ATGAA	3 cut(s)	243, 869, 875
TspRI	CASTG	2 cut(s)	421, 846
VpaK11BI	GGWCC	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	1038
XceI	RCATGY	4 cut(s)	242, 794, 853, 911
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	4 cut(s)	111, 116, 360, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.