Rroxscaffold_2G00125440

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019102
Physical Location & Seq
Reverse (-)
60221799 .. 60222041
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125440.1

Sequence Viewer

Length: 243 bp
ATGGCGATCGACGAGGATCGGGAGAGCTACGGCGGCGGCCGCCGCGTTCTCGTCGCGGCGCAGCGCAGCCTTGCCACCGAGGCGAAGCTCGAGGTCTACAACGAGGTGCCGAGGAGAATTCAGGAGCTCAATTATGAGGAGACCGGTCTTCCGGATTTGATGATCAGCTTTGGCTCCATTTCAATCGATTACCTTGCGTTGGATGTGAATGTGGAGAGGGCGAGAGGATGTGCTTACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

80

Amino Acids

8.97

Weight (kDa)

4.59

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 45, 56
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 5 cut(s) 33, 36, 40, 43, 56
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 199
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 4 cut(s) 27, 88, 127, 168
AluI AGCT 4 cut(s) 27, 88, 127, 168
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 61, 66
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 143
AspLEI GCGC 2 cut(s) 61, 66
AvaI CYCGRG 1 cut(s) 89
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 73, 78
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 7 cut(s) 34, 37, 40, 43, 57, 62, 67
BlsI GCNGC 7 cut(s) 35, 38, 41, 44, 58, 63, 68
BmeT110I CYCGRG 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 108, 175
BpiI GAAGAC 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 78, 110
BsaWI WCCGGW 2 cut(s) 143, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 143
BseAI TCCGGA 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 78, 110
BseGI GGATG 2 cut(s) 208, 233
BseLI CCNNNNNNNGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 127, 152
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 73, 78
Bsh1236I CGCG 2 cut(s) 45, 56
Bsh1285I CGRYCG 2 cut(s) 9, 40
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 186
BsiEI CGRYCG 2 cut(s) 9, 40
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 144, 152
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 6, 16, 162
BspACI CCGC 5 cut(s) 33, 36, 40, 43, 56
BspANI GGCC 1 cut(s) 39
BspDI ATCGAT 1 cut(s) 186
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 2 cut(s) 45, 56
BspLI GGNNCC 2 cut(s) 108, 175
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 78, 110
BssMI GATC 3 cut(s) 6, 16, 162
BstF5I GGATG 2 cut(s) 208, 233
BstFNI CGCG 2 cut(s) 45, 56
BstHHI GCGC 2 cut(s) 61, 66
BstKTI GATC 3 cut(s) 9, 19, 165
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 6, 16, 162
BstMCI CGRYCG 2 cut(s) 9, 40
BstMWI GCNNNNNNNGC 4 cut(s) 33, 39, 42, 80
BstUI CGCG 2 cut(s) 45, 56
BstV1I GCAGC 2 cut(s) 73, 78
BstV2I GAAGAC 1 cut(s) 140
BstZI CGGCCG 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 2 cut(s) 208, 233
CciNI GCGGCCGC 1 cut(s) 37
CfoI GCGC 2 cut(s) 61, 66
Cfr10I RCCGGY 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 143
CviJI RGCY 7 cut(s) 27, 39, 69, 88, 127, 168, 174
CviKI_1 RGCY 7 cut(s) 27, 39, 69, 88, 127, 168, 174
DpnI GATC 3 cut(s) 8, 18, 164
DpnII GATC 3 cut(s) 6, 16, 162
EaeI YGGCCR 1 cut(s) 37
EagI CGGCCG 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 129
FaiI YATR 2 cut(s) 135, 241
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 34, 37, 40, 43, 57, 62, 67
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 7 cut(s) 34, 37, 40, 43, 57, 62, 67
GlaI GCGC 2 cut(s) 60, 65
GluI GCNGC 7 cut(s) 34, 37, 40, 43, 57, 62, 67
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 144, 152
HhaI GCGC 2 cut(s) 61, 66
Hin6I GCGC 2 cut(s) 59, 64
HinP1I GCGC 2 cut(s) 59, 64
HpaII CCGG 2 cut(s) 144, 152
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 20, 122, 152
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 2 cut(s) 14, 56
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 39, 42, 80
HspAI GCGC 2 cut(s) 59, 64
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 6, 16, 162
LmnI GCTCC 2 cut(s) 124, 179
LpnPI CCDG 3 cut(s) 107, 157, 165
Lsp1109I GCAGC 2 cut(s) 73, 78
MalI GATC 3 cut(s) 8, 18, 164
MboI GATC 3 cut(s) 6, 16, 162
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 117, 130
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 7, 73, 85, 97, 105, 130, 210, 218
MroI TCCGGA 1 cut(s) 151
MspI CCGG 2 cut(s) 144, 152
MteI GCGCNGCGC 1 cut(s) 62
MvnI CGCG 2 cut(s) 45, 56
MwoI GCNNNNNNNGC 4 cut(s) 33, 39, 42, 80
NdeII GATC 3 cut(s) 6, 16, 162
NlaIV GGNNCC 2 cut(s) 108, 175
NmeAIII GCCGAG 1 cut(s) 135
NotI GCGGCCGC 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 7 cut(s) 35, 38, 41, 44, 58, 63, 68
Ple19I CGATCG 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 108, 175
PspXI VCTCGAGB 1 cut(s) 89
PvuI CGATCG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 7 cut(s) 34, 37, 40, 43, 57, 62, 67
Sau3AI GATC 3 cut(s) 6, 16, 162
SduI GDGCHC 1 cut(s) 129
SetI ASST 7 cut(s) 29, 90, 96, 108, 129, 170, 195
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 117, 130
SsiI CCGC 5 cut(s) 33, 36, 40, 43, 56
SstI GAGCTC 1 cut(s) 129
TaqI TCGA 3 cut(s) 9, 90, 186
TasI AATT 2 cut(s) 117, 130
TauI GCSGC 5 cut(s) 36, 39, 42, 45, 59
TseI GCWGC 2 cut(s) 61, 66
XapI RAATTY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.