Rroxscaffold_7G00211190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019102
Physical Location & Seq
Reverse (-)
61647442 .. 61650410
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211190.1

Sequence Viewer

Length: 612 bp
ATGGAGGCAAAGTCATCCCGTGGCTCTATCTCCGTTTTGATCCTCTCGTTTTCCGTGTTGACGACCTTGGATTCCGTCTTTTGGTCCCTCGTCATAGGCAGGTTGAAGGCACGGTGGTTGGCGTTCTCTCTCTGCCTAGGTCGTCCGGTTGTATTTGTGTCGGGAGTTTTCGGTTCCTTGGAGCAGGTTGACCGGAGGTATGGTGGCAGGTGGGGACAGCGGTGGCGGCAAGACCGGTGCCACTATTGTGATGTTGCAATTAACAACAGTGGGCAAGAACAAGAAGAAGAAGTCAATGAAGGCAAGCCAGCCACGCCCACAAACACGTCTACAATCACAAGCACAGTCGAACATGCATTCGTCACCCCAACTAGGGGGCAAATAGAAATTTTTGGTGAAGCAGGTCAGAATGTTTCTTATGCACAAAGCCAGAAAACCCGTGGCATTACACAGGGGTTGGGAACTCAAGCCTTGATCAATGCTTGCAAACCGAGGATTTCAATCCTTACGAATGGTGAGCACAAGCTCCCCGCATTGTTCGAGCCAAATATATATGGGAACTTATGCTTGTTTCTTCGGAAGCTTCATACTTTAGAGATCACATTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.54

Weight (kDa)

8.9

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 198
Acc36I ACCTGC 4 cut(s) 90, 175, 198, 392
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 329
AciI CCGC 3 cut(s) 220, 226, 531
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 387
AfiI CCNNNNNNNGG 4 cut(s) 81, 372, 373, 374
AflIII ACRYGT 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 106, 501
AjiI CACGTC 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 2 cut(s) 526, 583
AluI AGCT 2 cut(s) 526, 583
Alw21I GWGCWC 1 cut(s) 522
AlwI GGATC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 387
AsiGI ACCGGT 1 cut(s) 234
AspA2I CCTAGG 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 355, 407, 527
AvaII GGWCC 1 cut(s) 84
AvrII CCTAGG 1 cut(s) 136
BanI GGYRCC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 522
BclI TGATCA 1 cut(s) 474
BfaI CTAG 2 cut(s) 137, 372
BfuAI ACCTGC 4 cut(s) 90, 175, 198, 392
BisI GCNGC 1 cut(s) 227
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 86, 175, 239
BpuEI CTTGAG 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 6 cut(s) 19, 66, 136, 177, 439, 491
BsaWI WCCGGW 3 cut(s) 145, 192, 234
BsaXI ACNNNNNCTCC 3 cut(s) 26, 187, 217
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 372, 373, 374
Bse118I RCCGGY 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 500
BseDI CCNNGG 6 cut(s) 19, 66, 136, 177, 439, 491
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 4 cut(s) 81, 372, 373, 374
BseMI GCAATG 1 cut(s) 602
BshNI GGYRCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 3 cut(s) 146, 193, 235
BslFI GGGAC 2 cut(s) 70, 228
BslI CCNNNNNNNGG 4 cut(s) 81, 372, 373, 374
BsmFI GGGAC 2 cut(s) 70, 228
BsmI GAATGC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 3 cut(s) 39, 474, 597
BspACI CCGC 3 cut(s) 220, 226, 531
BspLI GGNNCC 3 cut(s) 86, 175, 239
BspMI ACCTGC 4 cut(s) 90, 175, 198, 392
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 6 cut(s) 19, 66, 136, 177, 439, 491
BssMI GATC 3 cut(s) 39, 474, 597
BssT1I CCWWGG 3 cut(s) 66, 136, 177
Bst4CI ACNGT 3 cut(s) 114, 269, 346
BstC8I GCNNGC 3 cut(s) 305, 309, 484
BstDSI CCRYGG 2 cut(s) 19, 439
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 42, 477, 600
BstMBI GATC 3 cut(s) 39, 474, 597
BstMWI GCNNNNNNNGC 2 cut(s) 226, 313
BstNSI RCATGY 1 cut(s) 356
BtgI CCRYGG 2 cut(s) 19, 439
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 4 cut(s) 90, 175, 198, 392
Cac8I GCNNGC 3 cut(s) 305, 309, 484
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 84
CspAI ACCGGT 1 cut(s) 234
CviAII CATG 1 cut(s) 353
CviJI RGCY 8 cut(s) 24, 307, 311, 429, 470, 526, 544, 583
CviKI_1 RGCY 8 cut(s) 24, 307, 311, 429, 470, 526, 544, 583
DpnI GATC 3 cut(s) 41, 476, 599
DpnII GATC 3 cut(s) 39, 474, 597
Eco130I CCWWGG 3 cut(s) 66, 136, 177
Eco47I GGWCC 1 cut(s) 84
EcoT14I CCWWGG 3 cut(s) 66, 136, 177
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 3 cut(s) 66, 136, 177
FaeI CATG 1 cut(s) 356
FaiI YATR 9 cut(s) 95, 201, 354, 420, 551, 553, 555, 565, 588
FaqI GGGAC 2 cut(s) 70, 228
FatI CATG 1 cut(s) 352
FauI CCCGC 1 cut(s) 538
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 2 cut(s) 137, 372
GluI GCNGC 1 cut(s) 227
HapII CCGG 3 cut(s) 146, 193, 235
Hin1II CATG 1 cut(s) 356
HincII GTYRAC 2 cut(s) 60, 190
HindII GTYRAC 2 cut(s) 60, 190
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 1 cut(s) 71
HpaII CCGG 3 cut(s) 146, 193, 235
HphI GGTGA 3 cut(s) 355, 407, 527
Hpy166II GTNNAC 3 cut(s) 60, 190, 330
Hpy188I TCNGA 2 cut(s) 408, 579
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 3 cut(s) 60, 190, 330
HpyAV CCTTC 2 cut(s) 100, 293
HpyCH4III ACNGT 3 cut(s) 114, 269, 346
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 5 cut(s) 257, 356, 422, 486, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 313
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 3 cut(s) 39, 474, 597
LmnI GCTCC 2 cut(s) 181, 531
MaeI CTAG 2 cut(s) 137, 372
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 361
MalI GATC 3 cut(s) 41, 476, 599
MboI GATC 3 cut(s) 39, 474, 597
MboII GAAGA 3 cut(s) 296, 299, 566
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 2 cut(s) 258, 387
MnlI CCTC 4 cut(s) 53, 98, 189, 486
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 246, 607
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 3 cut(s) 146, 193, 235
Mva1269I GAATGC 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 226, 313
NdeII GATC 3 cut(s) 39, 474, 597
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 3 cut(s) 86, 175, 239
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 356
OliI CACNNNNGTG 1 cut(s) 246
PaqCI CACCTGC 1 cut(s) 198
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 71
PinAI ACCGGT 1 cut(s) 234
PkrI GCNGC 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 86, 175, 239
PspPI GGNCC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 246, 607
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 39, 474, 597
Sau96I GGNCC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 522
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 246, 607
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 2 cut(s) 258, 387
SsiI CCGC 3 cut(s) 220, 226, 531
SspMI CTAG 2 cut(s) 137, 372
StyI CCWWGG 3 cut(s) 66, 136, 177
TaaI ACNGT 3 cut(s) 114, 269, 346
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 348, 540
TasI AATT 2 cut(s) 258, 387
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 312, 575
TspGWI ACGGA 3 cut(s) 22, 43, 64
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmaJI CCTAGG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 2 cut(s) 137, 372
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.