Rroxscaffold_6G00401470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019102
Physical Location & Seq
Forward (+)
23823209 .. 23827803
4595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401470.1

Sequence Viewer

Length: 675 bp
ATGCATTCGTCACCCCAACTAGGGGGGCAAATAGAAATTTTTGGTGAAGCAGGTCAGAATGTTTCTTATGCACAAAGCCGGGAAAACCCGTGGCATTACACGGGGTTGGGAACTCAAGCCTTGATCAATGCTTGCAACCGAGGATTTCAATCCGTACGAATGGTGAGCACAAGCTCCCCGCGCATTGTTCGAGCCAAATATATATGGGAACTTATGCTTGTTTCTTCGGAAGCTTCATACTTTAGAGATCACATTGCAAAAGAATTGGAGACTTCTGCTGGTATATTCATGGAATTTGGTTGCTTCCTTTTCAAGTCTTCTTTGCCATGGTTATCCACTTTTCAAAAGGGATCGAAACTAAGAGGAGAAACTATCTCATATACTTCAGCAAGAGCTATCACCAGAGAACCCTCGGCATTACAATGCTACAAAGGATTGGAACTTGATGGCAGAGAATGTGACCGTGTGGATCACCGAGCTCGGTCACCACTATTTTCAGGCCACTCATTTTGGTTTTCGGCCACCAAAAAACCGGCCAAACTTGGTCAATCGGAAGCGCTTCGACGTAGACCATCCTCCCCAAAATTTTTTGCCGAGAATCGAAACGTGGAGGAAGAACTGAAGGATGGAAGCTACGGGTCACTATTCACGAATCAAGTTCAAGCTTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.17

Weight (kDa)

9.21

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 568
AccII CGCG 1 cut(s) 181
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 358, 477
AcoI YGGCCR 2 cut(s) 519, 534
AcsI RAATTY 3 cut(s) 36, 293, 584
AcuI CTGAAG 2 cut(s) 369, 641
AfaI GTAC 1 cut(s) 156
AfeI AGCGCT 1 cut(s) 558
AfiI CCNNNNNNNGG 3 cut(s) 20, 21, 22
AgsI TTSAA 4 cut(s) 149, 313, 344, 662
AluBI AGCT 6 cut(s) 174, 233, 395, 479, 633, 665
AluI AGCT 6 cut(s) 174, 233, 395, 479, 633, 665
Alw21I GWGCWC 2 cut(s) 170, 481
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 358, 477
Aor51HI AGCGCT 1 cut(s) 558
AoxI GGCC 3 cut(s) 499, 519, 534
ApoI RAATTY 3 cut(s) 36, 293, 584
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 2 cut(s) 183, 559
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 6 cut(s) 3, 56, 175, 391, 464, 477
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 170, 481
BccI CCATC 3 cut(s) 440, 580, 620
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 148
BsaJI CCNNGG 4 cut(s) 89, 139, 326, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 21, 22
Bse118I RCCGGY 1 cut(s) 532
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 148
BseDI CCNNGG 4 cut(s) 89, 139, 326, 411
BseGI GGATG 2 cut(s) 572, 631
BseJI GATNNNNATC 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 20, 21, 22
BseMI GCAATG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 501, 521, 536
BsiHKAI GWGCWC 2 cut(s) 170, 481
BsiSI CCGG 2 cut(s) 79, 533
BsiWI CGTACG 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 20, 21, 22
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 3 cut(s) 501, 521, 536
Bsp1286I GDGCHC 2 cut(s) 170, 481
Bsp143I GATC 4 cut(s) 123, 247, 350, 469
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 1 cut(s) 179
BspANI GGCC 3 cut(s) 501, 521, 536
BspFNI CGCG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 2 cut(s) 358, 477
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 4 cut(s) 89, 139, 326, 411
BssMI GATC 4 cut(s) 123, 247, 350, 469
BssT1I CCWWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 359
BstDSI CCRYGG 2 cut(s) 89, 326
BstEII GGTNACC 1 cut(s) 483
BstF5I GGATG 2 cut(s) 572, 631
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 2 cut(s) 183, 559
BstKTI GATC 4 cut(s) 126, 250, 353, 472
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 123, 247, 350, 469
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstPI GGTNACC 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 3 cut(s) 501, 521, 536
BtgI CCRYGG 2 cut(s) 89, 326
BtsCI GGATG 2 cut(s) 572, 631
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 2 cut(s) 183, 559
Cfr10I RCCGGY 1 cut(s) 532
Csp6I GTAC 1 cut(s) 155
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CviAII CATG 2 cut(s) 289, 327
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 359
DpnI GATC 4 cut(s) 125, 249, 352, 471
DpnII GATC 4 cut(s) 123, 247, 350, 469
EaeI YGGCCR 2 cut(s) 519, 534
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 481
Eco47III AGCGCT 1 cut(s) 558
Eco53kI GAGCTC 1 cut(s) 479
Eco57I CTGAAG 2 cut(s) 369, 641
Eco91I GGTNACC 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 326
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 292, 330
FatI CATG 2 cut(s) 288, 326
FauI CCCGC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 568
FokI GGATG 2 cut(s) 559, 638
FriOI GRGCYC 1 cut(s) 481
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 182, 558
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 3 cut(s) 501, 521, 536
HapII CCGG 2 cut(s) 79, 533
HhaI GCGC 2 cut(s) 183, 559
Hin1II CATG 2 cut(s) 292, 330
Hin6I GCGC 2 cut(s) 181, 557
HinP1I GCGC 2 cut(s) 181, 557
HindIII AAGCTT 2 cut(s) 231, 663
HinfI GANTC 2 cut(s) 598, 652
HpaII CCGG 2 cut(s) 79, 533
HphI GGTGA 6 cut(s) 3, 56, 175, 391, 464, 477
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 3 cut(s) 57, 229, 553
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 1 cut(s) 616
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 565, 606
HpyCH4V TGCA 4 cut(s) 4, 71, 135, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 565, 606
Hsp92II CATG 2 cut(s) 292, 330
HspAI GCGC 2 cut(s) 181, 557
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 4 cut(s) 123, 247, 350, 469
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 6 cut(s) 36, 92, 264, 415, 483, 546
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 565, 606
MaeIII GTNAC 4 cut(s) 9, 458, 483, 639
MalI GATC 4 cut(s) 125, 249, 352, 471
MboI GATC 4 cut(s) 123, 247, 350, 469
MboII GAAGA 3 cut(s) 216, 309, 626
MhlI GDGCHC 2 cut(s) 170, 481
MluCI AATT 4 cut(s) 36, 263, 293, 584
MnlI CCTC 5 cut(s) 134, 356, 421, 586, 604
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 1 cut(s) 673
MslI CAYNNNNRTG 1 cut(s) 421
MspI CCGG 2 cut(s) 79, 533
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 326
NdeII GATC 4 cut(s) 123, 247, 350, 469
NlaIII CATG 2 cut(s) 292, 330
NmeAIII GCCGAG 2 cut(s) 392, 619
NmuCI GTSAC 4 cut(s) 9, 458, 483, 639
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 598, 652
Pfl23II CGTACG 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 481
PspEI GGTNACC 1 cut(s) 483
PspLI CGTACG 1 cut(s) 154
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 421
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 673
Sau3AI GATC 4 cut(s) 123, 247, 350, 469
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 170, 481
SetI ASST 9 cut(s) 55, 176, 235, 397, 481, 568, 609, 635, 667
SmiMI CAYNNNNRTG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 4 cut(s) 36, 263, 293, 584
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 568, 609
TaqI TCGA 4 cut(s) 190, 353, 562, 601
TaqII GACCGA 1 cut(s) 471
TasI AATT 4 cut(s) 36, 263, 293, 584
TfiI GAWTC 2 cut(s) 598, 652
Tru1I TTAA 1 cut(s) 673
Tru9I TTAA 1 cut(s) 673
TseFI GTSAC 4 cut(s) 9, 458, 483, 639
Tsp45I GTSAC 4 cut(s) 9, 458, 483, 639
TspDTI ATGAA 2 cut(s) 225, 277
TspGWI ACGGA 1 cut(s) 142
XapI RAATTY 3 cut(s) 36, 293, 584
XmiI GTMKAC 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.