Rroxscaffold_2G00125460

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019102
Physical Location & Seq
Reverse (-)
60235135 .. 60236119
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125460.1

Sequence Viewer

Length: 351 bp
ATGGCGATCGACGAGGCCGGGAGAGCTACGGCGCAGAGCCGCCGCGTTCTCGTCGCGGCGCGGCGCGGCCTTGCCACCGAGGCGAAGCTCGAGGTGCTACAACGAGGTGCGAGGAGAATTCGGGAGCTCAATTATGAGGAGACCGGTCTTCTGGATTTGATGATCGGCTTTGGCTCCATTTCAATCGATTACCTTGCGTTGGATGTGAATGTGGAGAGGGCGAGAGGATCTGAAATTGAGAACAAAGTTGGATCTGGATCATTCGGTGATCTGCACGGAGGCACATATTGTAGTCGGGAAGTTGCCATCAAAGTTTTAAAACCCGAGCGTGCCAATGCGGAGATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

116

Amino Acids

12.66

Weight (kDa)

6.6

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 45, 56, 61, 66
AciI CCGC 6 cut(s) 40, 43, 56, 61, 66, 338
AclWI GGATC 3 cut(s) 235, 259, 265
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 199
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 3 cut(s) 26, 88, 127
AluI AGCT 3 cut(s) 26, 88, 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 3 cut(s) 235, 259, 265
Ama87I CYCGRG 2 cut(s) 89, 323
AoxI GGCC 2 cut(s) 15, 67
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 143
AspLEI GCGC 3 cut(s) 34, 61, 66
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 2 cut(s) 89, 323
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 5 cut(s) 40, 43, 57, 62, 67
BlsI GCNGC 5 cut(s) 41, 44, 58, 63, 68
Bme1390I CCNGG 1 cut(s) 19
BmeT110I CYCGRG 2 cut(s) 89, 323
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 127, 152
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 4 cut(s) 45, 56, 61, 66
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 17, 69
BshTI ACCGGT 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 2 cut(s) 89, 323
BsiSI CCGG 2 cut(s) 18, 144
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 17, 69
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 89, 323
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 6, 162, 227, 251, 257, 268
BspACI CCGC 6 cut(s) 40, 43, 56, 61, 66, 338
BspANI GGCC 2 cut(s) 17, 69
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 4 cut(s) 45, 56, 61, 66
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 3 cut(s) 235, 259, 265
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 6 cut(s) 6, 162, 227, 251, 257, 268
BstC8I GCNNGC 1 cut(s) 330
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 4 cut(s) 45, 56, 61, 66
BstHHI GCGC 3 cut(s) 34, 61, 66
BstKTI GATC 6 cut(s) 9, 165, 230, 254, 260, 271
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 6 cut(s) 6, 162, 227, 251, 257, 268
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 23, 80, 94
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 4 cut(s) 45, 56, 61, 66
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 227, 251
BstYI RGATCY 2 cut(s) 227, 251
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 2 cut(s) 17, 69
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 3 cut(s) 34, 61, 66
Cfr10I RCCGGY 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 143
CviJI RGCY 8 cut(s) 17, 26, 39, 69, 88, 127, 168, 174
CviKI_1 RGCY 8 cut(s) 17, 26, 39, 69, 88, 127, 168, 174
DpnI GATC 6 cut(s) 8, 164, 229, 253, 259, 270
DpnII GATC 6 cut(s) 6, 162, 227, 251, 257, 268
DraI TTTAAA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 127
Eco88I CYCGRG 2 cut(s) 89, 323
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 129
FaiI YATR 2 cut(s) 135, 286
Fnu4HI GCNGC 5 cut(s) 40, 43, 57, 62, 67
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 5 cut(s) 40, 43, 57, 62, 67
GlaI GCGC 3 cut(s) 33, 60, 65
GluI GCNGC 5 cut(s) 40, 43, 57, 62, 67
HaeIII GGCC 2 cut(s) 17, 69
HapII CCGG 2 cut(s) 18, 144
HhaI GCGC 3 cut(s) 34, 61, 66
Hin6I GCGC 3 cut(s) 32, 59, 64
HinP1I GCGC 3 cut(s) 32, 59, 64
HpaII CCGG 2 cut(s) 18, 144
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 4 cut(s) 122, 152, 255, 296
Hpy99I CGWCG 2 cut(s) 14, 56
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 80, 94
HspAI GCGC 3 cut(s) 32, 59, 64
Kzo9I GATC 6 cut(s) 6, 162, 227, 251, 257, 268
LmnI GCTCC 2 cut(s) 124, 179
LpnPI CCDG 4 cut(s) 31, 137, 157, 240
LweI GCATC 1 cut(s) 333
MalI GATC 6 cut(s) 8, 164, 229, 253, 259, 270
MboI GATC 6 cut(s) 6, 162, 227, 251, 257, 268
MboII GAAGA 1 cut(s) 140
MflI RGATCY 2 cut(s) 227, 251
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 117, 130, 234
MmeI TCCRAC 2 cut(s) 180, 229
MnlI CCTC 9 cut(s) 7, 73, 85, 98, 105, 130, 210, 218, 272
MseI TTAA 1 cut(s) 317
MspI CCGG 2 cut(s) 18, 144
MspR9I CCNGG 1 cut(s) 19
MteI GCGCNGCGC 1 cut(s) 62
MvnI CGCG 4 cut(s) 45, 56, 61, 66
MwoI GCNNNNNNNGC 3 cut(s) 23, 80, 94
NciI CCSGG 1 cut(s) 19
NdeII GATC 6 cut(s) 6, 162, 227, 251, 257, 268
NlaIV GGNNCC 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 5 cut(s) 41, 44, 58, 63, 68
Ple19I CGATCG 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 89
PsuI RGATCY 2 cut(s) 227, 251
PvuI CGATCG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 5 cut(s) 40, 43, 57, 62, 67
Sau3AI GATC 6 cut(s) 6, 162, 227, 251, 257, 268
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 28, 90, 96, 109, 129, 195
SfaNI GCATC 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 117, 130, 234
SsiI CCGC 6 cut(s) 40, 43, 56, 61, 66, 338
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 3 cut(s) 9, 90, 186
TasI AATT 3 cut(s) 117, 130, 234
TauI GCSGC 5 cut(s) 42, 45, 59, 64, 69
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 291
XapI RAATTY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.