Rroxscaffold_7G00211180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019102
Physical Location & Seq
Reverse (-)
61639923 .. 61647057
7135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211180.1

Sequence Viewer

Length: 759 bp
ATGGAATTTGGTTGCTTCCTTTTCAAGTCTTCTTTGCCATGGTTATCCACTTTTCAAAAGGGATCGAAACTAAGAGGAGAAACTATCTCATATACTTCAGCAAGAGCTATCACCGAGAGAACCCTTCGGCATTACAATGCTACAAAGGATCGGAACTTGATGGCGAGAGAATGTGACCGTGTGGATCACCGAGCTCGGTCACCACTATTTTCAGGCCACTCATTTTGGCTGATATTAGTAAATCCTGATGTTGCAATTAACAACAGTGGGCAAGAACAAGAAGAAGAAGTCAATGAAGGCAAGCCAGCCACGCCCACAAACACGTCTACAATCACAAGCACGGTCGAACATGCATTCGTCACCCCAACTAGGGGGCAAATAGAAATTTTTGGTGAAGCAGGTCAGAATGTTTCTTATGCACAGGCCGGGAAAACCCGTGGCATTACACGGGGGTTGGGAACTCAAGCCTTGATCAATGCTTGCAAACCGAGGATTTCAATCCGTACGAATGGTGAGCACAAGCTCCCCAGCATTGTTCGAGCCAAATATATATGGGAACTTATGCTTGTTTCTTCGGAAGCTTCATACTTTAGAGATCACATTGCAGTGAGATTGCAGCTTTTGTGCATATATATTGTTGGGTGTAAAGTCCACCATTGTTGGGTATTAAGCAATGATGATGCGTTTCAATCTCTCTCTCTCAAAAAGGGTGACGATGGTGAATTTGAGACCTTAACCAACACTCAACAAGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.29

Weight (kDa)

8.15

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 326
AclWI GGATC 3 cut(s) 70, 156, 192
AcsI RAATTY 3 cut(s) 5, 384, 722
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 4 cut(s) 369, 370, 371, 661
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 4 cut(s) 25, 56, 498, 689
AjiI CACGTC 1 cut(s) 324
AluBI AGCT 5 cut(s) 107, 194, 523, 581, 619
AluI AGCT 5 cut(s) 107, 194, 523, 581, 619
Alw21I GWGCWC 2 cut(s) 196, 519
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 3 cut(s) 70, 156, 192
AoxI GGCC 2 cut(s) 214, 423
ApeKI GCWGC 1 cut(s) 616
ApoI RAATTY 3 cut(s) 5, 384, 722
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 8 cut(s) 103, 179, 192, 352, 404, 524, 722, 731
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 196, 519
BbvI GCAGC 1 cut(s) 628
BccI CCATC 2 cut(s) 154, 710
BclI TGATCA 1 cut(s) 471
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 1 cut(s) 617
BlsI GCNGC 1 cut(s) 618
Bme1390I CCNGG 1 cut(s) 427
BmgBI CACGTC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 38, 436, 488
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 370, 371, 661
Bse3DI GCAATG 2 cut(s) 600, 679
Bse8I GATNNNNATC 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 38, 436, 488
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 4 cut(s) 369, 370, 371, 661
BseMI GCAATG 2 cut(s) 600, 679
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 628
BseYI CCCAGC 1 cut(s) 527
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 216, 425
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 196, 519
BsiSI CCGG 1 cut(s) 426
BsiWI CGTACG 1 cut(s) 503
BslI CCNNNNNNNGG 4 cut(s) 369, 370, 371, 661
BsmAI GTCTC 1 cut(s) 722
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 216, 425
Bso31I GGTCTC 1 cut(s) 722
Bsp1286I GDGCHC 2 cut(s) 196, 519
Bsp143I GATC 5 cut(s) 62, 148, 184, 471, 595
Bsp19I CCATGG 1 cut(s) 38
BspANI GGCC 2 cut(s) 216, 425
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 3 cut(s) 70, 156, 192
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 600, 679
BssECI CCNNGG 3 cut(s) 38, 436, 488
BssMI GATC 5 cut(s) 62, 148, 184, 471, 595
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 179, 266, 343
BstC8I GCNNGC 3 cut(s) 302, 306, 481
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 2 cut(s) 38, 436
BstEII GGTNACC 1 cut(s) 198
BstKTI GATC 5 cut(s) 65, 151, 187, 474, 598
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 5 cut(s) 62, 148, 184, 471, 595
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 353
BstPI GGTNACC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 628
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 216, 425
BtgI CCRYGG 2 cut(s) 38, 436
BtrI CACGTC 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 271, 612
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 302, 306, 481
Csp6I GTAC 1 cut(s) 504
CspCI CAANNNNNGTGG 4 cut(s) 206, 241, 641, 676
CviAII CATG 2 cut(s) 39, 350
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 1 cut(s) 71
DpnI GATC 5 cut(s) 64, 150, 186, 473, 597
DpnII GATC 5 cut(s) 62, 148, 184, 471, 595
Ecl136II GAGCTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 353
FatI CATG 2 cut(s) 38, 349
FbaI TGATCA 1 cut(s) 471
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 617
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 617
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 617
GsaI CCCAGC 1 cut(s) 531
HaeIII GGCC 2 cut(s) 216, 425
HapII CCGG 1 cut(s) 426
Hin1II CATG 2 cut(s) 42, 353
HindIII AAGCTT 1 cut(s) 579
HpaII CCGG 1 cut(s) 426
HphI GGTGA 8 cut(s) 103, 179, 192, 352, 404, 524, 722, 731
Hpy166II GTNNAC 2 cut(s) 327, 652
Hpy188I TCNGA 3 cut(s) 153, 405, 577
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 327, 652
HpyAV CCTTC 2 cut(s) 134, 290
HpyCH4III ACNGT 3 cut(s) 179, 266, 343
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 7 cut(s) 254, 353, 419, 483, 605, 616, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 2 cut(s) 42, 353
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 5 cut(s) 62, 148, 184, 471, 595
LmnI GCTCC 1 cut(s) 528
LpnPI CCDG 7 cut(s) 198, 258, 318, 384, 407, 439, 541
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 1 cut(s) 670
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 4 cut(s) 173, 198, 358, 710
MalI GATC 5 cut(s) 64, 150, 186, 473, 597
MboI GATC 5 cut(s) 62, 148, 184, 471, 595
MboII GAAGA 4 cut(s) 21, 293, 296, 564
MhlI GDGCHC 2 cut(s) 196, 519
MluCI AATT 4 cut(s) 5, 255, 384, 722
MnlI CCTC 2 cut(s) 68, 483
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 4 cut(s) 258, 668, 734, 757
MslI CAYNNNNRTG 2 cut(s) 135, 605
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 38
NdeII GATC 5 cut(s) 62, 148, 184, 471, 595
NlaIII CATG 2 cut(s) 42, 353
NmuCI GTSAC 4 cut(s) 173, 198, 358, 710
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 1 cut(s) 353
PctI GAATGC 1 cut(s) 353
Pfl23II CGTACG 1 cut(s) 503
PkrI GCNGC 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 196
PspEI GGTNACC 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 527
PspLI CGTACG 1 cut(s) 503
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 2 cut(s) 135, 605
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 4 cut(s) 258, 668, 734, 757
SatI GCNGC 1 cut(s) 617
Sau3AI GATC 5 cut(s) 62, 148, 184, 471, 595
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 2 cut(s) 196, 519
SetI ASST 8 cut(s) 109, 196, 326, 403, 525, 583, 621, 734
SfaNI GCATC 1 cut(s) 670
SmiMI CAYNNNNRTG 2 cut(s) 135, 605
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
Sse9I AATT 4 cut(s) 5, 255, 384, 722
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 3 cut(s) 179, 266, 343
TaiI ACGT 1 cut(s) 326
TaqI TCGA 3 cut(s) 65, 345, 538
TaqII GACCGA 1 cut(s) 186
TasI AATT 4 cut(s) 5, 255, 384, 722
Tru1I TTAA 4 cut(s) 258, 668, 734, 757
Tru9I TTAA 4 cut(s) 258, 668, 734, 757
TscAI CASTG 2 cut(s) 271, 612
TseFI GTSAC 4 cut(s) 173, 198, 358, 710
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 4 cut(s) 173, 198, 358, 710
TspDTI ATGAA 2 cut(s) 309, 573
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 2 cut(s) 271, 612
XapI RAATTY 3 cut(s) 5, 384, 722
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.