Rroxscaffold_2G00136300

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
74054122 .. 74056979
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136300.1

Sequence Viewer

Length: 1872 bp
ATGGCGAATATTGATGATGGGGAGAAAAGTACTGCACCCACCACCACTGCCAATATGTCCTCTAAGAAGAAGGAACTTCTCTCTACGGCCTTGAAGCGAACCAGTGAATGGATTTTTTCTCAGGAGATTCCCAGTGATGTTAGCGTTCGGGTTGGAGAAGCTTCCTTCTCATTACACAAGTTTCCTTTAGTTTCAAAGTGTGGATACATCAGGAAACTGGTGTCTGAATCTACTGATGCTGATATATCTGTCATTGAACTACCTGATGTTCCGGGAGGAGCAGAAGCATTTGAGCTTGCAGCTAAATTCTGCTATGGAATAAATTTTGAGATAAGCACAGAAAACATTGCAATGCTTCGTTGCGTGTCAGAGTACCTTCTCATGACTGAGGAGTATGCAGTTGGAAACCTTGTGGGAAGAACTGATGCATACCTGAATGAAGTGGCACTTAAAAGCCTTGCAGGCGCAGTTTCAGTTTTGCACATGTCAGAAAGCTTCCTCCCAATTGCAGAGAAAGTGAAGTTAGTGAGCCGATGCATTGATGCAATTGCTTACATTACCTGCAAAGACAGCCAGTTCTGTTTGTCTGGTAGGACTGATAGTGGCCATGAGAGTCTAAGCTCTTCAGCGGTGTATCAAACGAAACCTGTTGTTGATTGGTGGGCTGAAGATTTAACTGTCCTTAGAATTGATACCTTCCAAAGAGTTATGATTGCAATGATGGCAAGAGGGTTTAAGCAATACGCTCTTGGACCAATACTCATGCTCTATGCACAGAAATCTCTAAGAGGTTTGGAAACATTTGGAAAGGGAAGGAAGAAAATCGAGCCACGACAAGAGCATGAGAAGAGAGTTGTCTTGGAAACAATTGTGAGTCTTCTGCCAAGGGAGAAGAATACAATGTCAGTGAGCTTTCTTTCTATGCTGCTTCGTGCTGCAAAAAATCTAGAAACAACAGTTGCTTGTCAGCTAGATTTGGAGAAGAGAATGGGATTGCAATTGGCTCAGGCTGTCTTGGATGATCTCTTGATTCCCTCTTATTCCTTTACTGGGGACACATTGCTTGATGTGGATACTGTGCAAAGGATTATGATGAATTACCTAGAGTATTATACGGATAGGAACCATTTGAGCTTCAGTGCAGACGATGACTATGTTTCTCCTCCACTAAGTGACTTGGAACGAGTTGGAAAGTTAATGGAGAACTACCTTGCCGAAATAGCAACTGATCGGAACTTATCTGTTTCAAAGTTCATTGGCATTGCTGAACTTATTCCAGAACAGTCAAGGATAACCGAAGACGGGATGTACAGAGCAGTTGATATCTACCTAAAGGCACATCCTAGTCTAAGTGATATGGAGAAAAAGAAAGTCTGTAGTGTGATGGATTGCCAGAAGCTTTCTCGTGAGGCCTGTGCTCACGCTGCTCAGAATGACCGGCTTCCTGTTCAAACTGTTGTCCAAGTGCTCTACTACGAGCAGCAGCGCCTTCGAGATGTCATGGATGGTAGTCTCATTGGTGGTGAATCATCCGTACTTCCTTCCAAAGCAAACAACTTGTACTCCACTGATCTCCACCACCATGTTCCCGATGAGCTTTCCATGTTGCGCAGACAAAATGAGGAGCTGAAAATAGAGTTGCTGAAGATGAAAATGAAGCTGAAAGAAATTGAAACATCTACTATGAGGACAGTAACAAGCAGTCCAATGGGAAACATTTCAACATCTAGTGATAAGCCTCCTCTGCCTCGAAAATCATTTATCAACTCGGTTTCAAAAAGACTTGGGAAACTTTCTCCATTCGGAGTGACACCTCCCAATCCCAAAGCCCGTGCAAGACCTGCCAAAGATCGGCGGCATTCAATTTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

623

Amino Acids

69.67

Weight (kDa)

6.64

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 39 - 129 1.9e-06 BTB/POZ domain
NPH3 PF03000 219 - 472 7.8e-90 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1610
Acc36I ACCTGC 2 cut(s) 569, 1849
AccB7I CCANNNNNTGG 1 cut(s) 108
AciI CCGC 2 cut(s) 629, 1855
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 2 cut(s) 305, 322
AcuI CTGAAG 4 cut(s) 609, 687, 1120, 1664
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 5 cut(s) 31, 374, 1310, 1536, 1562
AfiI CCNNNNNNNGG 4 cut(s) 108, 1050, 1302, 1851
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 9 cut(s) 94, 195, 257, 1248, 1451, 1673, 1722, 1776, 1863
Alw21I GWGCWC 2 cut(s) 1420, 1470
Alw26I GTCTC 1 cut(s) 1517
AoxI GGCC 3 cut(s) 87, 604, 1410
ApeKI GCWGC 6 cut(s) 299, 925, 935, 1424, 1480, 1483
ApoI RAATTY 2 cut(s) 305, 322
Asp700I GAANNNNTTC 2 cut(s) 1272, 1717
AspLEI GCGC 3 cut(s) 467, 1488, 1611
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 1535
AvaII GGWCC 1 cut(s) 752
BalI TGGCCA 1 cut(s) 606
BauI CACGAG 1 cut(s) 1404
BbsI GAAGAC 2 cut(s) 869, 1305
Bbv12I GWGCWC 2 cut(s) 1420, 1470
BbvI GCAGC 6 cut(s) 311, 912, 922, 1411, 1492, 1495
BccI CCATC 4 cut(s) 11, 715, 1378, 1499
BceAI ACGGC 1 cut(s) 102
BcgI CGANNNNNNTGC 2 cut(s) 1472, 1506
BciVI GTATCC 2 cut(s) 197, 1066
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 1517
BfaI CTAG 5 cut(s) 947, 971, 1103, 1344, 1728
BfmI CTRYAG 1 cut(s) 1375
BfoI RGCGCY 1 cut(s) 1489
BfuAI ACCTGC 2 cut(s) 569, 1849
BfuI GTATCC 2 cut(s) 197, 1066
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 7 cut(s) 300, 926, 936, 1425, 1481, 1484, 1856
BlsI GCNGC 7 cut(s) 301, 927, 937, 1426, 1482, 1485, 1857
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 1124
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 2 cut(s) 126, 1059
BmsI GCATC 4 cut(s) 226, 415, 524, 532
BmuI ACTGGG 2 cut(s) 126, 1059
BpiI GAAGAC 2 cut(s) 869, 1305
Bpu10I CCTNAGC 1 cut(s) 1005
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 884
BsaXI ACNNNNNCTCC 2 cut(s) 1547, 1577
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 1050, 1302, 1851
Bse118I RCCGGY 1 cut(s) 1437
Bse1I ACTGG 5 cut(s) 102, 132, 222, 574, 1054
Bse3DI GCAATG 5 cut(s) 345, 357, 723, 1058, 1260
BseDI CCNNGG 1 cut(s) 884
BseGI GGATG 5 cut(s) 1024, 1311, 1339, 1510, 1529
BseLI CCNNNNNNNGG 4 cut(s) 108, 1050, 1302, 1851
BseMI GCAATG 5 cut(s) 345, 357, 723, 1058, 1260
BseMII CTCAG 4 cut(s) 134, 378, 1019, 1442
BseNI ACTGG 5 cut(s) 102, 132, 222, 574, 1054
BseRI GAGGAG 5 cut(s) 291, 404, 1152, 1637, 1731
BseXI GCAGC 6 cut(s) 311, 912, 922, 1411, 1492, 1495
BsgI GTGCAG 2 cut(s) 18, 1161
BshFI GGCC 3 cut(s) 89, 606, 1412
BsiHKAI GWGCWC 2 cut(s) 1420, 1470
BsiSI CCGG 2 cut(s) 272, 1438
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 4 cut(s) 108, 1050, 1302, 1851
BsmAI GTCTC 1 cut(s) 1517
BsmFI GGGAC 1 cut(s) 1067
BsmI GAATGC 1 cut(s) 1858
BsnI GGCC 3 cut(s) 89, 606, 1412
Bsp1286I GDGCHC 2 cut(s) 1420, 1470
Bsp1407I TGTACA 1 cut(s) 1308
Bsp143I GATC 4 cut(s) 1021, 1228, 1570, 1849
BspACI CCGC 2 cut(s) 629, 1855
BspANI GGCC 3 cut(s) 89, 606, 1412
BspCNI CTCAG 4 cut(s) 133, 379, 1018, 1441
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 1124
BspMI ACCTGC 2 cut(s) 569, 1849
BspQI GCTCTTC 1 cut(s) 628
BsrDI GCAATG 5 cut(s) 345, 357, 723, 1058, 1260
BsrFI RCCGGY 1 cut(s) 1437
BsrGI TGTACA 1 cut(s) 1308
BsrI ACTGG 5 cut(s) 102, 132, 222, 574, 1054
BssAI RCCGGY 1 cut(s) 1437
BssECI CCNNGG 1 cut(s) 884
BssMI GATC 4 cut(s) 1021, 1228, 1570, 1849
BssSI CACGAG 1 cut(s) 1404
BssT1I CCWWGG 1 cut(s) 884
Bst2BI CACGAG 1 cut(s) 1404
Bst4CI ACNGT 6 cut(s) 679, 958, 1078, 1284, 1456, 1693
Bst6I CTCTTC 3 cut(s) 628, 842, 977
BstAPI GCANNNNNTGC 1 cut(s) 1841
BstAUI TGTACA 1 cut(s) 1308
BstC8I GCNNGC 2 cut(s) 297, 463
BstF5I GGATG 5 cut(s) 1024, 1311, 1339, 1510, 1529
BstH2I RGCGCY 1 cut(s) 1489
BstHHI GCGC 3 cut(s) 467, 1488, 1611
BstKTI GATC 4 cut(s) 1024, 1231, 1573, 1852
BstMAI GTCTC 1 cut(s) 1517
BstMBI GATC 4 cut(s) 1021, 1228, 1570, 1849
BstMWI GCNNNNNNNGC 7 cut(s) 462, 570, 722, 1220, 1424, 1744, 1841
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 1375
BstV1I GCAGC 6 cut(s) 311, 912, 922, 1411, 1492, 1495
BstV2I GAAGAC 2 cut(s) 869, 1305
BsuI GTATCC 2 cut(s) 197, 1066
BsuRI GGCC 3 cut(s) 89, 606, 1412
BtsCI GGATG 5 cut(s) 1024, 1311, 1339, 1510, 1529
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 6 cut(s) 45, 109, 139, 912, 1144, 1566
BveI ACCTGC 2 cut(s) 569, 1849
Cac8I GCNNGC 2 cut(s) 297, 463
CciI TCATGA 1 cut(s) 381
CfoI GCGC 3 cut(s) 467, 1488, 1611
Cfr10I RCCGGY 1 cut(s) 1437
Cfr13I GGNCC 1 cut(s) 752
Csp6I GTAC 5 cut(s) 30, 373, 1309, 1535, 1561
CviAII CATG 8 cut(s) 382, 484, 608, 763, 842, 1501, 1583, 1603
CviQI GTAC 5 cut(s) 30, 373, 1309, 1535, 1561
DpnI GATC 4 cut(s) 1023, 1230, 1572, 1851
DpnII GATC 4 cut(s) 1021, 1228, 1570, 1849
DraIII CACNNNGTG 1 cut(s) 1172
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 3 cut(s) 628, 842, 977
EarI CTCTTC 3 cut(s) 628, 842, 977
Eco130I CCWWGG 1 cut(s) 884
Eco147I AGGCCT 1 cut(s) 1412
Eco32I GATATC 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 752
Eco57I CTGAAG 4 cut(s) 609, 687, 1120, 1664
EcoRV GATATC 1 cut(s) 1324
EcoT14I CCWWGG 1 cut(s) 884
EcoT22I ATGCAT 2 cut(s) 430, 539
ErhI CCWWGG 1 cut(s) 884
FaeI CATG 8 cut(s) 385, 487, 611, 766, 845, 1504, 1586, 1606
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 1067
FatI CATG 8 cut(s) 381, 483, 607, 762, 841, 1500, 1582, 1602
Fnu4HI GCNGC 7 cut(s) 300, 926, 936, 1425, 1481, 1484, 1856
FokI GGATG 5 cut(s) 1031, 1318, 1326, 1516, 1517
Fsp4HI GCNGC 7 cut(s) 300, 926, 936, 1425, 1481, 1484, 1856
FspBI CTAG 5 cut(s) 947, 971, 1103, 1344, 1728
FspI TGCGCA 1 cut(s) 1610
GlaI GCGC 3 cut(s) 466, 1487, 1610
GluI GCNGC 7 cut(s) 300, 926, 936, 1425, 1481, 1484, 1856
HaeII RGCGCY 1 cut(s) 1489
HaeIII GGCC 3 cut(s) 89, 606, 1412
HapII CCGG 2 cut(s) 272, 1438
HhaI GCGC 3 cut(s) 467, 1488, 1611
Hin1II CATG 8 cut(s) 385, 487, 611, 766, 845, 1504, 1586, 1606
Hin6I GCGC 3 cut(s) 465, 1486, 1609
HinP1I GCGC 3 cut(s) 465, 1486, 1609
HindIII AAGCTT 3 cut(s) 159, 493, 1397
HinfI GANTC 6 cut(s) 127, 227, 613, 874, 1030, 1526
HpaII CCGG 2 cut(s) 272, 1438
HphI GGTGA 1 cut(s) 1535
Hpy188I TCNGA 6 cut(s) 226, 370, 490, 1233, 1431, 1805
HpyAV CCTTC 7 cut(s) 64, 175, 386, 706, 807, 1499, 1551
HpyCH4III ACNGT 6 cut(s) 679, 958, 1078, 1284, 1456, 1693
HpyF10VI GCNNNNNNNGC 7 cut(s) 462, 570, 722, 1220, 1424, 1744, 1841
Hsp92II CATG 8 cut(s) 385, 487, 611, 766, 845, 1504, 1586, 1606
HspAI GCGC 3 cut(s) 465, 1486, 1609
Kzo9I GATC 4 cut(s) 1021, 1228, 1570, 1849
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 2 cut(s) 278, 1624
Lsp1109I GCAGC 6 cut(s) 311, 912, 922, 1411, 1492, 1495
LweI GCATC 4 cut(s) 226, 415, 524, 532
MaeI CTAG 5 cut(s) 947, 971, 1103, 1344, 1728
MaeIII GTNAC 3 cut(s) 1172, 1693, 1807
MalI GATC 4 cut(s) 1023, 1230, 1572, 1851
MboI GATC 4 cut(s) 1021, 1228, 1570, 1849
MfeI CAATTG 4 cut(s) 504, 546, 867, 998
MhlI GDGCHC 2 cut(s) 1420, 1470
MlsI TGGCCA 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 2 cut(s) 622, 883
MmeI TCCRAC 3 cut(s) 133, 382, 1168
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 2 cut(s) 430, 539
MroXI GAANNNNTTC 2 cut(s) 1272, 1717
MscI TGGCCA 1 cut(s) 606
MseI TTAA 4 cut(s) 450, 674, 735, 1196
MslI CAYNNNNRTG 2 cut(s) 350, 1581
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 2 cut(s) 272, 1438
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 4 cut(s) 504, 546, 867, 998
Mva1269I GAATGC 1 cut(s) 1858
MwoI GCNNNNNNNGC 7 cut(s) 462, 570, 722, 1220, 1424, 1744, 1841
NciI CCSGG 1 cut(s) 273
NdeII GATC 4 cut(s) 1021, 1228, 1570, 1849
NlaIII CATG 8 cut(s) 385, 487, 611, 766, 845, 1504, 1586, 1606
NlaIV GGNNCC 1 cut(s) 1124
NmuCI GTSAC 2 cut(s) 1172, 1807
NsbI TGCGCA 1 cut(s) 1610
NsiI ATGCAT 2 cut(s) 430, 539
NspI RCATGY 1 cut(s) 487
PagI TCATGA 1 cut(s) 381
PceI AGGCCT 1 cut(s) 1412
PciI ACATGT 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 628
PctI GAATGC 1 cut(s) 1858
PdmI GAANNNNTTC 2 cut(s) 1272, 1717
PfeI GAWTC 4 cut(s) 127, 227, 1030, 1526
PflMI CCANNNNNTGG 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 7 cut(s) 301, 927, 937, 1426, 1482, 1485, 1857
PleI GAGTC 2 cut(s) 621, 882
PpsI GAGTC 2 cut(s) 621, 882
PscI ACATGT 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 1124
PspPI GGNCC 1 cut(s) 752
RsaI GTAC 5 cut(s) 31, 374, 1310, 1536, 1562
RsaNI GTAC 5 cut(s) 30, 373, 1309, 1535, 1561
RseI CAYNNNNRTG 2 cut(s) 350, 1581
SapI GCTCTTC 1 cut(s) 628
SaqAI TTAA 4 cut(s) 450, 674, 735, 1196
SatI GCNGC 7 cut(s) 300, 926, 936, 1425, 1481, 1484, 1856
Sau3AI GATC 4 cut(s) 1021, 1228, 1570, 1849
Sau96I GGNCC 1 cut(s) 752
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 2 cut(s) 622, 883
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 2 cut(s) 1420, 1470
SfaNI GCATC 4 cut(s) 226, 415, 524, 532
SfcI CTRYAG 1 cut(s) 1375
SinI GGWCC 1 cut(s) 752
SmiMI CAYNNNNRTG 2 cut(s) 350, 1581
SseBI AGGCCT 1 cut(s) 1412
SsiI CCGC 2 cut(s) 629, 1855
SspI AATATT 1 cut(s) 10
SspMI CTAG 5 cut(s) 947, 971, 1103, 1344, 1728
StuI AGGCCT 1 cut(s) 1412
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 6 cut(s) 679, 958, 1078, 1284, 1456, 1693
TaqI TCGA 3 cut(s) 825, 1492, 1750
TatI WGTACW 3 cut(s) 29, 1308, 1560
TauI GCSGC 1 cut(s) 1858
TfiI GAWTC 4 cut(s) 127, 227, 1030, 1526
Tru1I TTAA 4 cut(s) 450, 674, 735, 1196
Tru9I TTAA 4 cut(s) 450, 674, 735, 1196
TscAI CASTG 6 cut(s) 52, 109, 139, 912, 1144, 1573
TseFI GTSAC 2 cut(s) 1172, 1807
TseI GCWGC 6 cut(s) 299, 925, 935, 1424, 1480, 1483
Tsp45I GTSAC 2 cut(s) 1172, 1807
TspDTI ATGAA 5 cut(s) 453, 1109, 1243, 1664, 1670
TspGWI ACGGA 2 cut(s) 1130, 1522
TspRI CASTG 6 cut(s) 52, 109, 139, 912, 1144, 1573
Van91I CCANNNNNTGG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 2 cut(s) 305, 322
XbaI TCTAGA 1 cut(s) 946
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 2 cut(s) 1272, 1717
XspI CTAG 5 cut(s) 947, 971, 1103, 1344, 1728
ZrmI AGTACT 1 cut(s) 31
Zsp2I ATGCAT 2 cut(s) 430, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.