Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007199

Physical Location & Seq

Genomic Coordinates Reverse (-)

12689887 .. 12691390

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCATCCAACTCACTTTCTTCACGAAGCTCGAGCTCCTCATGGACTCCTAAGCAGAACAAACAGTTCGAAAAGGCGCTAGCCTTGTACGACAAGGACACCCCCGACCGCTGGCAGAAGGTGGCCAGAGCCGTAGGAGGGAAGTCCGCGGAGGAGGTGAAGAGGCACTATGAGATCCTCCTTGAGGATGTCAAGCACATTGAGTCTGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

71

Amino Acids

7.99

Weight (kDa)

9.05

Isoelectric Point (pI)

84.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	1.3e-08	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 59	4.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67385 AT5G67385 AT5G67385 AT5G67385 AT5G67385
fragaria_vesca	FvH4_1g17280 FvH4_1g17280 FvH4_1g17280
malus_domestica	MD02G1182500.v1.1 MD15G1293800.v1.1
prunus_persica	Prupe.6G223600_v2.0.a1 Prupe.6G223600_v2.0.a1
pyrus_communis	pycom02g14800
rosa_chinensis	RchiOBHm_Chr2g0107471
rosa_laevigata	RLG00000017581
rosa_multiflora	Rmu_sc0005152.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136300
rosa_rugosa	Rorug02G0143900 Rorug02G0144000 Rorug02G0144100 Rorug02G0144100
rosa_samantha	Rh2AG194000 Rh2BG206200 Rh2CG199200
rosa_wichuraiana	Rw2G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	109, 147, 149
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	111, 138, 184
AluBI	AGCT	2 cut(s)	30, 36
AluI	AGCT	2 cut(s)	30, 36
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	69
AsuNHI	GCTAGC	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	83
BplI	GAGNNNNNCTC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 138, 184
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	5, 193
BseLI	CCNNNNNNNGG	3 cut(s)	111, 138, 184
BseRI	GAGGAG	2 cut(s)	28, 167
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	111, 138, 184
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	3 cut(s)	109, 147, 149
BspANI	GGCC	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	81, 113
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	5, 193
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	5, 193
Cac8I	GCNNGC	2 cut(s)	81, 113
CfoI	GCGC	1 cut(s)	79
Cfr42I	CCGCGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	6 cut(s)	30, 36, 83, 125, 131, 210
CviKI_1	RGCY	6 cut(s)	30, 36, 83, 125, 131, 210
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	45
FaiI	YATR	2 cut(s)	43, 171
FatI	CATG	1 cut(s)	41
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	46, 203
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	24, 213
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	45
HspAI	GCGC	1 cut(s)	77
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	3 cut(s)	97, 139, 192
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	12, 172
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	40, 212
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	49, 131, 145, 148, 156, 178, 188
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	111, 149
MvnI	CGCG	1 cut(s)	149
NdeII	GATC	1 cut(s)	174
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	31
PleI	GAGTC	2 cut(s)	40, 211
PpsI	GAGTC	2 cut(s)	40, 211
Psp124BI	GAGCTC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	38
SacII	CCGCGG	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	2 cut(s)	40, 212
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	32, 38, 123, 159
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	31
Sfr303I	CCGCGG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	31, 182
SmoI	CTYRAG	2 cut(s)	31, 182
SsiI	CCGC	3 cut(s)	109, 147, 149
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	32, 69
XagI	CCTNNNNNAGG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.