Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007199

Physical Location & Seq

Genomic Coordinates Forward (+)

12675800 .. 12677428

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCAAGATTTCAACTCTTACTGTGATTTTTCTGGTGCTATGGCTGGCAATGTCTGTCGGGACTAGGGCTCATGATCACGACGGCAAAGTTGAATCATGGACTGAATGGACTGCCAAGGGACTCGGAATAAGTCAGAAAAATGAAGTAGACGGGAATGCCGGTGGCGATAACAAACCAACTGAAGAGGAGGTACTGGGGGCATGGCTAAATGTTCTGCGTGGAGCCGAGGTTGCTCTTGAAGCTAATAAATTTCACACAGCTATTGCCATGGTTGCAGGAGTTTCTGCCAGATTAGAAAATAGCAATATGCCTGACGATGAGAAACGCGCCAAGTTTAAAGAAATGCTCAAACTAATTGAATGGGCAGCCGAGGAAGATAAGAAAGTCAAAGCTATAGCTCTCATTAACACACTTACAGAGGAATTCAAACGGAAATACGGAAATCAGCAAGGAGGAGGATATCAGCCGAGGGGGTTACTCGAAGCCGAAGATAATCAGAGAAAAAAGCAGTTGCTAGTGAACAATTTGCGAGAAGCCTTCACAGCTATTAAAGAGAAGCAAAAGGAAAAGGCTGAAGAGATTCTTTCCAATGTTTACCTGATTCTTAAGAATAATAAGAATTTATGTAAGGAAGAAAAAGCACTAGCATTTCTTGAGGCCATCCACCAAACTGAGCAGTATTTAAAAGAAAATGCGATAGATAAAGCTGAACAGACTCTCCAAGGAGCTGCGTTCGGTCTAGGAATTCAGCAGCTACAAGAACAAGAAAAGACAGAAGCCAAAGTGAGTAGAAAAGTTGGCGCTTCCAGTTCTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

274

Amino Acids

30.55

Weight (kDa)

5.97

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67385 AT5G67385 AT5G67385 AT5G67385 AT5G67385
fragaria_vesca	FvH4_1g17280 FvH4_1g17280 FvH4_1g17280
malus_domestica	MD02G1182500.v1.1 MD15G1293800.v1.1
prunus_persica	Prupe.6G223600_v2.0.a1 Prupe.6G223600_v2.0.a1
pyrus_communis	pycom02g14800
rosa_chinensis	RchiOBHm_Chr2g0107471
rosa_laevigata	RLG00000017581
rosa_multiflora	Rmu_sc0005152.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136300
rosa_rugosa	Rorug02G0143900 Rorug02G0144000 Rorug02G0144100 Rorug02G0144100
rosa_samantha	Rh2AG194000 Rh2BG206200 Rh2CG199200
rosa_wichuraiana	Rw2G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	251, 425, 622, 747
AcuI	CTGAAG	2 cut(s)	204, 597
AfaI	GTAC	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	15, 95, 242, 362, 430
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
AluBI	AGCT	9 cut(s)	245, 263, 395, 401, 548, 710, 731, 757, 820
AluI	AGCT	9 cut(s)	245, 263, 395, 401, 548, 710, 731, 757, 820
Alw21I	GWGCWC	1 cut(s)	822
AoxI	GGCC	2 cut(s)	3, 660
ApeKI	GCWGC	3 cut(s)	368, 731, 754
ApoI	RAATTY	4 cut(s)	251, 425, 622, 747
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	332, 806
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	73, 822
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	380, 718, 766
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	76
BfaI	CTAG	5 cut(s)	66, 518, 647, 743, 823
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	807
BfrI	CTTAAG	1 cut(s)	608
BisI	GCNGC	3 cut(s)	369, 732, 755
BlsI	GCNGC	3 cut(s)	370, 733, 756
BmiI	GGNNCC	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	677
BsaJI	CCNNGG	6 cut(s)	117, 228, 270, 372, 470, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 705, 735
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	201, 810
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	6 cut(s)	117, 228, 270, 372, 470, 724
BseGI	GGATG	1 cut(s)	663
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	666, 807
BseNI	ACTGG	2 cut(s)	201, 810
BseRI	GAGGAG	2 cut(s)	203, 471
BseXI	GCAGC	3 cut(s)	380, 718, 766
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	5, 662
BsiHKAI	GWGCWC	1 cut(s)	822
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	76, 135
BsmFI	GGGAC	2 cut(s)	76, 135
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	5, 662
Bsp1286I	GDGCHC	2 cut(s)	73, 822
Bsp143I	GATC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	270
BspANI	GGCC	2 cut(s)	5, 662
BspCNI	CTCAG	2 cut(s)	667, 808
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	201, 810
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	6 cut(s)	117, 228, 270, 372, 470, 724
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	3 cut(s)	117, 270, 724
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	180, 573
BstAFI	CTTAAG	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	675, 816
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	807
BstHHI	GCGC	2 cut(s)	332, 806
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 242, 275, 545
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	380, 718, 766
BsuRI	GGCC	2 cut(s)	5, 662
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	2 cut(s)	332, 806
Cfr10I	RCCGGY	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	4 cut(s)	74, 99, 204, 271
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	675, 816
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	2 cut(s)	340, 687
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	180, 573
EarI	CTCTTC	2 cut(s)	180, 573
Ecl136II	GAGCTC	1 cut(s)	820
Eco130I	CCWWGG	3 cut(s)	117, 270, 724
Eco24I	GRGCYC	2 cut(s)	73, 822
Eco32I	GATATC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	820
Eco57I	CTGAAG	2 cut(s)	204, 597
EcoICRI	GAGCTC	1 cut(s)	820
EcoRI	GAATTC	2 cut(s)	425, 747
EcoRV	GATATC	1 cut(s)	464
EcoT14I	CCWWGG	3 cut(s)	117, 270, 724
EcoT38I	GRGCYC	2 cut(s)	73, 822
ErhI	CCWWGG	3 cut(s)	117, 270, 724
FaeI	CATG	4 cut(s)	77, 102, 207, 274
FaiI	YATR	8 cut(s)	43, 75, 100, 205, 272, 311, 398, 628
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	76, 135
FatI	CATG	4 cut(s)	73, 98, 203, 270
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	369, 732, 755
FokI	GGATG	1 cut(s)	650
FriOI	GRGCYC	2 cut(s)	73, 822
Fsp4HI	GCNGC	3 cut(s)	369, 732, 755
FspBI	CTAG	5 cut(s)	66, 518, 647, 743, 823
GlaI	GCGC	2 cut(s)	331, 805
GluI	GCNGC	3 cut(s)	369, 732, 755
HaeII	RGCGCY	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	5, 662
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	332, 806
Hin1II	CATG	4 cut(s)	77, 102, 207, 274
Hin6I	GCGC	2 cut(s)	330, 804
HinP1I	GCGC	2 cut(s)	330, 804
HinfI	GANTC	5 cut(s)	95, 123, 583, 604, 718
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	3 cut(s)	151, 523, 598
Hpy188I	TCNGA	4 cut(s)	128, 138, 501, 817
Hpy188III	TCNNGA	5 cut(s)	61, 74, 80, 239, 656
Hpy8I	GTNNAC	3 cut(s)	151, 523, 598
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 242, 275, 545
HpyF3I	CTNAG	2 cut(s)	675, 816
Hsp92II	CATG	4 cut(s)	77, 102, 207, 274
HspAI	GCGC	2 cut(s)	330, 804
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	224, 728
LpnPI	CCDG	8 cut(s)	20, 32, 175, 182, 264, 304, 327, 614
Lsp1109I	GCAGC	3 cut(s)	380, 718, 766
MaeI	CTAG	5 cut(s)	66, 518, 647, 743, 823
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	5 cut(s)	197, 389, 503, 590, 647
MhlI	GDGCHC	2 cut(s)	73, 822
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	251, 357, 425, 526, 622, 747
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	117, 712
MnlI	CCTC	9 cut(s)	181, 184, 223, 367, 415, 449, 452, 465, 652
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	339, 408, 552, 609, 686
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	163
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	233, 242, 275, 545
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	77, 102, 207, 274
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	3 cut(s)	253, 397, 495
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	95, 583, 604
PkrI	GCNGC	3 cut(s)	370, 733, 756
PleI	GAGTC	2 cut(s)	117, 712
PpsI	GAGTC	2 cut(s)	117, 712
Psp124BI	GAGCTC	1 cut(s)	822
PspN4I	GGNNCC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	822
SaqAI	TTAA	5 cut(s)	339, 408, 552, 609, 686
SatI	GCNGC	3 cut(s)	369, 732, 755
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	117, 712
SduI	GDGCHC	2 cut(s)	73, 822
SfcI	CTRYAG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	608, 656
SmoI	CTYRAG	2 cut(s)	608, 656
Sse9I	AATT	6 cut(s)	251, 357, 425, 526, 622, 747
SspMI	CTAG	5 cut(s)	66, 518, 647, 743, 823
SstI	GAGCTC	1 cut(s)	822
StyI	CCWWGG	3 cut(s)	117, 270, 724
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	483
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	6 cut(s)	251, 357, 425, 526, 622, 747
TfiI	GAWTC	3 cut(s)	95, 583, 604
Tru1I	TTAA	5 cut(s)	339, 408, 552, 609, 686
Tru9I	TTAA	5 cut(s)	339, 408, 552, 609, 686
TseI	GCWGC	3 cut(s)	368, 731, 754
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	2 cut(s)	448, 456
Vha464I	CTTAAG	1 cut(s)	608
XapI	RAATTY	4 cut(s)	251, 425, 622, 747
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	5 cut(s)	66, 518, 647, 743, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.