Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007199

Physical Location & Seq

Genomic Coordinates Reverse (-)

12679159 .. 12683913

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGGCGGCCTCGAAACTGTCTTCGTGCTTAGCGATGGCTATTGCGGCGGCGGCCGCTATGCCGACGCTCACCACACGCGCCTACGCCGACGGCGGCGGCTTTCGCTTTTCTCCGTTCTCGTCTTCTTCTTCTTCTTCTTCATCGGCCGCGAAGGACCCAAGTTCGAGTGGGAAGCCGGAATATGAAGCCGAAGAGCCAAGAGGGTCCGGGATGGACCCAGAGGCTTTAGAAAGAGCTGCCAAAGCTCTCAGAGAAATCAATAGCTCTAAGAACTCCAAGCAGATTTTCGACATGATGAGGAAGCAGGAACAAACTCGCCAGACTGAGTTATCTGCTGAGAAGGCTCATTTTCAAGCTCAGCAATCTCATGCTGACATTGAAAGGCAGAGGAAATTGGCTGAAGAACAAAGAAATCTTGTACAGCAAGACGCGCAGCGAAAGGCACAAGTTATGCGATACGAAGATGAACTGGCCAGGAAAAGAATGCAGACAGATCATGAAACCCAGAGGCAGCATAATATTGAGTTGGTTAGGATGCAAGAGGAGTCCTCTATGAGGAAAGAGCGAGCAAGACAGGCTACTGAGGAACAGATCCAAGCTCAGCAGCGTCAGACCGAAAAAGAGAGAGCTGAACTGGAAAGAGAAACCATAAGAGTGAAGGCCATAGCAGAGGCAGAAGGTCGGGCCCATGAAGCAAAATTGACTGAGGACCAAAACAGGAGAATGCTTATCGAACGGATGAATGGTGAAAAGGAAAAATGGCTTGCTGCAATAAATACAGCTTTCAGTCACATTGAAGGGGGTTTTAGAACTTTACTGACTGATAGGAATAAATTGGTTATGACCGTTGGAGGTGCCACAGCATTGGCTGCAGGTGTTTATACAACTAGAGAAGGTTCTAGGGTTATATGGGGTTATGTCAACCGGATACTTGGGCAGCCATCTTTGATTCGAGAATCATCCATTGCAAGATTTCCAGGTTCAGAGATAATTTCTCAAGCAAAGAATAAAGTTTTAAATTATAGTACAGCAGCTGCAGCTTCTGGTCCCCTGAAGAATGGTCTTGGAAATATTGTTCTCCATCCTTCGTTGCAGAGGAGAATAGAACAACTCGCTCGAGCTACAGCAAACACTAAGGCTCATCAGGCACCCTTTCGCAACATGATGTTTTATGGCCCCCCTGGTACTGGCAAAACCATGGTTGCAAGGGAAATAGCTCGAAAATCGGGTTTGGATTATGCTATGATGACCGGAGGAGATGTTGCACCCTTGGGTGCACAGGCTGTTACTAAAATCCATCAGATATTTGATTGGGCAAAAAAATCAAACAAAGGTCTACTACTCTTCATTGATGAGGCAGATGCATTCCTATGCGAGCGTAACAGCACACATATGAGCGAATCTCAGCGGAGTGCTCTAAATGCATTGCTGTTCCGAACTGGAGATCAATCGAGAGACATAGTTCTTGTCCTTGCTACAAACAGGCCAAGTGATCTTGACAGTGCTATCACTGACCGCATAGATGAAGTGATTGAGTTCCCACTTCCTGGAGAGGAGGAGCGATTTAAGTTATTGAAACTCTATTTGAACAAGTATCTTTCTGGTGAAGAGAACACCTCTAAGTGGGGCTCTCTGTACAAGAAGCAGCCACAAAAGATAACAATGAAGGATCTGTCCGATGATGTGATCCGAGAGGCTGCCCGGAAGACAGAAGGGTTCTCTGGCCGCGAGATTGCTAAACTCATGGCTGGTGTTCAAGCAGCTGTGTACGGGCGCCCAGATTGTGTATTGGACTCCCAATTGTTTGAGGAGATTGTAGATTACAAAGTTGCAGAGCACCACCAGAGGATAAAACTAGCAGCTGAAGGTGGTGATGGGATTTTTGGCCTGACGAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

633

Amino Acids

70.48

Weight (kDa)

8.97

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATAD3_N	PF12037	55 - 318	5.8e-104	ATPase family AAA domain-containing protein 3, N-terminal
AAA	PF00004	388 - 515	4.3e-28	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67385 AT5G67385 AT5G67385 AT5G67385 AT5G67385
fragaria_vesca	FvH4_1g17280 FvH4_1g17280 FvH4_1g17280
malus_domestica	MD02G1182500.v1.1 MD15G1293800.v1.1
prunus_persica	Prupe.6G223600_v2.0.a1 Prupe.6G223600_v2.0.a1
pyrus_communis	pycom02g14800
rosa_chinensis	RchiOBHm_Chr2g0107471
rosa_laevigata	RLG00000017581
rosa_multiflora	Rmu_sc0005152.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136300
rosa_rugosa	Rorug02G0143900 Rorug02G0144000 Rorug02G0144100 Rorug02G0144100
rosa_samantha	Rh2AG194000 Rh2BG206200 Rh2CG199200
rosa_wichuraiana	Rw2G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	863
Acc36I	ACCTGC	1 cut(s)	863
AccB1I	GGYRCC	3 cut(s)	854, 1147, 1773
AccB7I	CCANNNNNTGG	1 cut(s)	1547
AccI	GTMKAC	1 cut(s)	1336
AccII	CGCG	4 cut(s)	78, 149, 431, 1728
AclWI	GGATC	3 cut(s)	586, 1677, 1681
AcoI	YGGCCR	4 cut(s)	51, 144, 471, 1723
AcuI	CTGAAG	3 cut(s)	420, 1073, 1884
AcyI	GRCGYC	1 cut(s)	1774
AfaI	GTAC	5 cut(s)	420, 1027, 1186, 1637, 1769
AfiI	CCNNNNNNNGG	4 cut(s)	555, 1187, 1547, 1623
AgsI	TTSAA	6 cut(s)	353, 380, 797, 1576, 1588, 1757
AjnI	CCWGG	4 cut(s)	473, 976, 1180, 1546
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
Alw21I	GWGCWC	3 cut(s)	1279, 1417, 1839
Alw26I	GTCTC	1 cut(s)	1449
Alw44I	GTGCAC	1 cut(s)	1275
AlwI	GGATC	3 cut(s)	586, 1677, 1681
AlwNI	CAGNNNCTG	2 cut(s)	1034, 1043
Ama87I	CYCGRG	1 cut(s)	1116
ApaI	GGGCCC	1 cut(s)	688
ApaLI	GTGCAC	1 cut(s)	1275
AspLEI	GCGC	3 cut(s)	80, 433, 1776
AspS9I	GGNCC	8 cut(s)	154, 204, 214, 684, 685, 709, 1046, 1175
AsuC2I	CCSGG	2 cut(s)	208, 1702
AsuHPI	GGTGA	4 cut(s)	61, 758, 1616, 1883
AvaI	CYCGRG	1 cut(s)	1116
AvaII	GGWCC	5 cut(s)	154, 204, 214, 709, 1046
BaeGI	GKGCMC	2 cut(s)	688, 1279
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	3 cut(s)	854, 1147, 1773
BanII	GRGCYC	2 cut(s)	688, 1631
BbsI	GAAGAC	3 cut(s)	12, 114, 1712
Bbv12I	GWGCWC	3 cut(s)	1279, 1417, 1839
BccI	CCATC	6 cut(s)	28, 205, 949, 1089, 1305, 1868
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	4 cut(s)	475, 978, 1182, 1548
BciVI	GTATCC	1 cut(s)	921
BcnI	CCSGG	2 cut(s)	208, 1702
BcoDI	GTCTC	1 cut(s)	1449
BfaI	CTAG	3 cut(s)	888, 900, 1856
BfmI	CTRYAG	3 cut(s)	870, 1035, 1122
BfoI	RGCGCY	1 cut(s)	1777
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	921
BlpI	GCTNAGC	3 cut(s)	28, 357, 600
Bme1390I	CCNGG	6 cut(s)	208, 475, 978, 1182, 1548, 1702
Bme18I	GGWCC	5 cut(s)	154, 204, 214, 709, 1046
BmeT110I	CYCGRG	1 cut(s)	1116
BmgT120I	GGNCC	8 cut(s)	154, 204, 214, 684, 685, 709, 1046, 1175
BmiI	GGNNCC	9 cut(s)	156, 205, 216, 686, 856, 1048, 1149, 1177, 1775
BmrFI	CCNGG	6 cut(s)	208, 475, 978, 1182, 1548, 1702
BmsI	GCATC	2 cut(s)	525, 1351
BpiI	GAAGAC	3 cut(s)	12, 114, 1712
BplI	GAGNNNNNCTC	6 cut(s)	533, 565, 1387, 1419, 1601, 1633
BpmI	CTGGAG	2 cut(s)	1461, 1569
Bpu1102I	GCTNAGC	3 cut(s)	28, 357, 600
BpuEI	CTTGAG	1 cut(s)	981
BpuMI	CCSGG	2 cut(s)	208, 1702
BsaHI	GRCGYC	1 cut(s)	1774
BsaJI	CCNNGG	3 cut(s)	1180, 1197, 1269
BsaWI	WCCGGW	2 cut(s)	924, 1250
BsaXI	ACNNNNNCTCC	2 cut(s)	1245, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	555, 1187, 1547, 1623
Bse1I	ACTGG	4 cut(s)	474, 639, 1192, 1444
Bse3DI	GCAATG	2 cut(s)	963, 1424
BseBI	CCWGG	4 cut(s)	475, 978, 1182, 1548
BseDI	CCNNGG	3 cut(s)	1180, 1197, 1269
BseGI	GGATG	5 cut(s)	216, 540, 744, 959, 1081
BseLI	CCNNNNNNNGG	4 cut(s)	555, 1187, 1547, 1623
BseMI	GCAATG	2 cut(s)	963, 1424
BseMII	CTCAG	8 cut(s)	262, 315, 327, 371, 573, 614, 696, 1418
BseNI	ACTGG	4 cut(s)	474, 639, 1192, 1444
BseRI	GAGGAG	6 cut(s)	557, 1111, 1269, 1568, 1571, 1823
BseSI	GKGCMC	2 cut(s)	688, 1279
BseX3I	CGGCCG	2 cut(s)	51, 144
Bsh1236I	CGCG	4 cut(s)	78, 149, 431, 1728
Bsh1285I	CGRYCG	2 cut(s)	54, 147
BshNI	GGYRCC	3 cut(s)	854, 1147, 1773
BsiEI	CGRYCG	2 cut(s)	54, 147
BsiHKAI	GWGCWC	3 cut(s)	1279, 1417, 1839
BsiHKCI	CYCGRG	1 cut(s)	1116
BsiSI	CCGG	5 cut(s)	176, 207, 925, 1251, 1702
BslFI	GGGAC	1 cut(s)	1032
BslI	CCNNNNNNNGG	4 cut(s)	555, 1187, 1547, 1623
BsmAI	GTCTC	1 cut(s)	1449
BsmFI	GGGAC	1 cut(s)	1032
BsmI	GAATGC	3 cut(s)	489, 729, 1364
BsoBI	CYCGRG	1 cut(s)	1116
Bsp120I	GGGCCC	1 cut(s)	684
Bsp1286I	GDGCHC	5 cut(s)	688, 1279, 1417, 1631, 1839
Bsp1407I	TGTACA	2 cut(s)	418, 1635
Bsp143I	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
Bsp1720I	GCTNAGC	3 cut(s)	28, 357, 600
Bsp19I	CCATGG	1 cut(s)	1197
BspCNI	CTCAG	8 cut(s)	261, 316, 328, 370, 574, 613, 697, 1417
BspFNI	CGCG	4 cut(s)	78, 149, 431, 1728
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	9 cut(s)	156, 205, 216, 686, 856, 1048, 1149, 1177, 1775
BspMAI	CTGCAG	2 cut(s)	874, 1039
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	3 cut(s)	586, 1677, 1681
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	3 cut(s)	854, 1147, 1773
BsrDI	GCAATG	2 cut(s)	963, 1424
BsrGI	TGTACA	2 cut(s)	418, 1635
BsrI	ACTGG	4 cut(s)	474, 639, 1192, 1444
BssECI	CCNNGG	3 cut(s)	1180, 1197, 1269
BssMI	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
BssNI	GRCGYC	1 cut(s)	1774
BssT1I	CCWWGG	2 cut(s)	1197, 1269
Bst2UI	CCWGG	4 cut(s)	475, 978, 1182, 1548
Bst4CI	ACNGT	3 cut(s)	18, 847, 1502
Bst6I	CTCTTC	3 cut(s)	186, 1349, 1602
BstACI	GRCGYC	1 cut(s)	1774
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstAUI	TGTACA	2 cut(s)	418, 1635
BstC8I	GCNNGC	3 cut(s)	567, 765, 1376
BstDSI	CCRYGG	1 cut(s)	1197
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstF5I	GGATG	5 cut(s)	216, 540, 744, 959, 1081
BstFNI	CGCG	4 cut(s)	78, 149, 431, 1728
BstH2I	RGCGCY	1 cut(s)	1777
BstHHI	GCGC	3 cut(s)	80, 433, 1776
BstKTI	GATC	6 cut(s)	496, 594, 1447, 1495, 1672, 1689
BstMAI	GTCTC	1 cut(s)	1449
BstMBI	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
BstMCI	CGRYCG	2 cut(s)	54, 147
BstNI	CCWGG	4 cut(s)	475, 978, 1182, 1548
BstSCI	CCNGG	6 cut(s)	206, 473, 976, 1180, 1546, 1700
BstSFI	CTRYAG	3 cut(s)	870, 1035, 1122
BstSLI	GKGCMC	2 cut(s)	688, 1279
BstUI	CGCG	4 cut(s)	78, 149, 431, 1728
BstV2I	GAAGAC	3 cut(s)	12, 114, 1712
BstX2I	RGATCY	2 cut(s)	591, 1669
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	2 cut(s)	591, 1669
BstZI	CGGCCG	2 cut(s)	51, 144
BsuI	GTATCC	1 cut(s)	921
BtgI	CCRYGG	1 cut(s)	1197
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	5 cut(s)	216, 540, 744, 959, 1081
BtsIMutI	CAGTG	2 cut(s)	1507, 1509
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	3 cut(s)	567, 765, 1376
CaiI	CAGNNNCTG	2 cut(s)	1034, 1043
CciI	TCATGA	1 cut(s)	496
CciNI	GCGGCCGC	1 cut(s)	51
CfoI	GCGC	3 cut(s)	80, 433, 1776
Cfr13I	GGNCC	8 cut(s)	154, 204, 214, 684, 685, 709, 1046, 1175
CseI	GACGC	3 cut(s)	73, 437, 596
Csp6I	GTAC	5 cut(s)	419, 1026, 1185, 1636, 1768
CviAII	CATG	7 cut(s)	292, 368, 497, 689, 1162, 1198, 1744
CviQI	GTAC	5 cut(s)	419, 1026, 1185, 1636, 1768
DinI	GGCGCC	1 cut(s)	1775
DpnI	GATC	6 cut(s)	495, 593, 1446, 1494, 1671, 1688
DpnII	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
DraI	TTTAAA	1 cut(s)	1017
EaeI	YGGCCR	4 cut(s)	51, 144, 471, 1723
EagI	CGGCCG	2 cut(s)	51, 144
Eam1104I	CTCTTC	3 cut(s)	186, 1349, 1602
EarI	CTCTTC	3 cut(s)	186, 1349, 1602
EclXI	CGGCCG	2 cut(s)	51, 144
Eco130I	CCWWGG	2 cut(s)	1197, 1269
Eco24I	GRGCYC	2 cut(s)	688, 1631
Eco47I	GGWCC	5 cut(s)	154, 204, 214, 709, 1046
Eco52I	CGGCCG	2 cut(s)	51, 144
Eco57I	CTGAAG	3 cut(s)	420, 1073, 1884
Eco88I	CYCGRG	1 cut(s)	1116
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	4 cut(s)	473, 976, 1180, 1546
EcoT14I	CCWWGG	2 cut(s)	1197, 1269
EcoT22I	ATGCAT	2 cut(s)	1366, 1426
EcoT38I	GRGCYC	2 cut(s)	688, 1631
EgeI	GGCGCC	1 cut(s)	1775
EheI	GGCGCC	1 cut(s)	1775
ErhI	CCWWGG	2 cut(s)	1197, 1269
FaeI	CATG	7 cut(s)	295, 371, 500, 692, 1165, 1201, 1747
FaqI	GGGAC	1 cut(s)	1032
FatI	CATG	7 cut(s)	291, 367, 496, 688, 1161, 1197, 1743
FauNDI	CATATG	1 cut(s)	1392
FblI	GTMKAC	1 cut(s)	1336
FokI	GGATG	5 cut(s)	223, 547, 751, 946, 1068
FriOI	GRGCYC	2 cut(s)	688, 1631
FspBI	CTAG	3 cut(s)	888, 900, 1856
GlaI	GCGC	3 cut(s)	79, 432, 1775
GsuI	CTGGAG	2 cut(s)	1461, 1569
HaeII	RGCGCY	1 cut(s)	1777
HapII	CCGG	5 cut(s)	176, 207, 925, 1251, 1702
HgaI	GACGC	3 cut(s)	73, 437, 596
HhaI	GCGC	3 cut(s)	80, 433, 1776
Hin1I	GRCGYC	1 cut(s)	1774
Hin1II	CATG	7 cut(s)	295, 371, 500, 692, 1165, 1201, 1747
Hin6I	GCGC	3 cut(s)	78, 431, 1774
HinP1I	GCGC	3 cut(s)	78, 431, 1774
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HinfI	GANTC	5 cut(s)	545, 949, 956, 1400, 1793
HpaII	CCGG	5 cut(s)	176, 207, 925, 1251, 1702
HphI	GGTGA	4 cut(s)	61, 758, 1616, 1883
Hpy166II	GTNNAC	4 cut(s)	922, 1277, 1337, 1768
Hpy188I	TCNGA	7 cut(s)	251, 612, 985, 1302, 1436, 1678, 1691
Hpy188III	TCNNGA	4 cut(s)	497, 953, 1452, 1496
Hpy8I	GTNNAC	4 cut(s)	922, 1277, 1337, 1768
Hpy99I	CGWCG	2 cut(s)	67, 92
HpyCH4III	ACNGT	3 cut(s)	18, 847, 1502
Hsp92I	GRCGYC	1 cut(s)	1774
Hsp92II	CATG	7 cut(s)	295, 371, 500, 692, 1165, 1201, 1747
HspAI	GCGC	3 cut(s)	78, 431, 1774
KasI	GGCGCC	1 cut(s)	1773
Kzo9I	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	1558
LweI	GCATC	2 cut(s)	525, 1351
MaeI	CTAG	3 cut(s)	888, 900, 1856
MaeIII	GTNAC	3 cut(s)	788, 1285, 1379
MalI	GATC	6 cut(s)	495, 593, 1446, 1494, 1671, 1688
MboI	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
MfeI	CAATTG	1 cut(s)	1799
MflI	RGATCY	2 cut(s)	591, 1669
MhlI	GDGCHC	5 cut(s)	688, 1279, 1417, 1631, 1839
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	6 cut(s)	392, 698, 833, 990, 1018, 1799
MluNI	TGGCCA	1 cut(s)	473
Mly113I	GGCGCC	1 cut(s)	1774
MlyI	GAGTC	2 cut(s)	554, 1787
MmeI	TCCRAC	1 cut(s)	829
Mox20I	TGGCCA	1 cut(s)	473
Mph1103I	ATGCAT	2 cut(s)	1366, 1426
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	1016, 1566
MslI	CAYNNNNRTG	3 cut(s)	653, 1369, 1391
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	4 cut(s)	1034, 1408, 1763, 1862
MspI	CCGG	5 cut(s)	176, 207, 925, 1251, 1702
MspR9I	CCNGG	6 cut(s)	208, 475, 978, 1182, 1548, 1702
MunI	CAATTG	1 cut(s)	1799
Mva1269I	GAATGC	3 cut(s)	489, 729, 1364
MvaI	CCWGG	4 cut(s)	475, 978, 1182, 1548
MvnI	CGCG	4 cut(s)	78, 149, 431, 1728
NarI	GGCGCC	1 cut(s)	1774
NciI	CCSGG	2 cut(s)	208, 1702
NcoI	CCATGG	1 cut(s)	1197
NdeI	CATATG	1 cut(s)	1392
NdeII	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
NlaIII	CATG	7 cut(s)	295, 371, 500, 692, 1165, 1201, 1747
NlaIV	GGNNCC	9 cut(s)	156, 205, 216, 686, 856, 1048, 1149, 1177, 1775
NmuCI	GTSAC	1 cut(s)	788
NotI	GCGGCCGC	1 cut(s)	51
NsiI	ATGCAT	2 cut(s)	1366, 1426
PaeR7I	CTCGAG	1 cut(s)	1116
PagI	TCATGA	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	863
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	3 cut(s)	489, 729, 1364
PfeI	GAWTC	3 cut(s)	949, 956, 1400
PflMI	CCANNNNNTGG	1 cut(s)	1547
PfoI	TCCNGGA	2 cut(s)	206, 1546
PleI	GAGTC	2 cut(s)	553, 1787
PluTI	GGCGCC	1 cut(s)	1777
PpsI	GAGTC	2 cut(s)	553, 1787
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	4 cut(s)	473, 976, 1180, 1546
PspGI	CCWGG	4 cut(s)	473, 976, 1180, 1546
PspN4I	GGNNCC	9 cut(s)	156, 205, 216, 686, 856, 1048, 1149, 1177, 1775
PspOMI	GGGCCC	1 cut(s)	684
PspPI	GGNCC	8 cut(s)	154, 204, 214, 684, 685, 709, 1046, 1175
PspPPI	RGGWCCY	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	1116
PstI	CTGCAG	2 cut(s)	874, 1039
PstNI	CAGNNNCTG	2 cut(s)	1034, 1043
PsuI	RGATCY	2 cut(s)	591, 1669
PvuII	CAGCTG	3 cut(s)	1034, 1763, 1862
RsaI	GTAC	5 cut(s)	420, 1027, 1186, 1637, 1769
RsaNI	GTAC	5 cut(s)	419, 1026, 1185, 1636, 1768
RseI	CAYNNNNRTG	3 cut(s)	653, 1369, 1391
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	1016, 1566
Sau3AI	GATC	6 cut(s)	493, 591, 1444, 1492, 1669, 1686
Sau96I	GGNCC	8 cut(s)	154, 204, 214, 684, 685, 709, 1046, 1175
SchI	GAGTC	2 cut(s)	554, 1787
ScrFI	CCNGG	6 cut(s)	208, 475, 978, 1182, 1548, 1702
SduI	GDGCHC	5 cut(s)	688, 1279, 1417, 1631, 1839
SfaNI	GCATC	2 cut(s)	525, 1351
SfcI	CTRYAG	3 cut(s)	870, 1035, 1122
SfoI	GGCGCC	1 cut(s)	1775
Sfr274I	CTCGAG	1 cut(s)	1116
SinI	GGWCC	5 cut(s)	154, 204, 214, 709, 1046
SlaI	CTCGAG	1 cut(s)	1116
SmiMI	CAYNNNNRTG	3 cut(s)	653, 1369, 1391
SmlI	CTYRAG	2 cut(s)	996, 1116
SmoI	CTYRAG	2 cut(s)	996, 1116
Sse9I	AATT	6 cut(s)	392, 698, 833, 990, 1018, 1799
SspDI	GGCGCC	1 cut(s)	1773
SspI	AATATT	2 cut(s)	520, 1072
SspMI	CTAG	3 cut(s)	888, 900, 1856
StyD4I	CCNGG	6 cut(s)	206, 473, 976, 1180, 1546, 1700
StyI	CCWWGG	2 cut(s)	1197, 1269
TaaI	ACNGT	3 cut(s)	18, 847, 1502
TaqI	TCGA	8 cut(s)	11, 164, 288, 732, 952, 1117, 1219, 1451
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	6 cut(s)	392, 698, 833, 990, 1018, 1799
TatI	WGTACW	3 cut(s)	418, 1025, 1635
TauI	GCSGC	9 cut(s)	8, 47, 50, 53, 56, 96, 99, 149, 1728
TfiI	GAWTC	3 cut(s)	949, 956, 1400
Tru1I	TTAA	2 cut(s)	1016, 1566
Tru9I	TTAA	2 cut(s)	1016, 1566
TscAI	CASTG	2 cut(s)	1507, 1516
TseFI	GTSAC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	9 cut(s)	129, 198, 480, 513, 705, 755, 1336, 1539, 1679
TspGWI	ACGGA	2 cut(s)	102, 751
TspRI	CASTG	2 cut(s)	1507, 1516
Van91I	CCANNNNNTGG	1 cut(s)	1547
VneI	GTGCAC	1 cut(s)	1275
VpaK11BI	GGWCC	5 cut(s)	154, 204, 214, 709, 1046
XagI	CCTNNNNNAGG	1 cut(s)	553
XhoI	CTCGAG	1 cut(s)	1116
XmiI	GTMKAC	1 cut(s)	1336
XspI	CTAG	3 cut(s)	888, 900, 1856
Zsp2I	ATGCAT	2 cut(s)	1366, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.