Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003296

Physical Location & Seq

Genomic Coordinates Forward (+)

80928131 .. 80934288

Gene Structure 6158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGGTGGCCATTGGTGAGGAGGAGCCAATGCAGGAGCCAGGCCACGGGGAGAGGATACTCGTTTCTGTTCGGCTGCGTCCTTTGAACGAGAAGGAGACTGCCAGGAATGATGTGTCGGATTGGGAATGTATTAATGACAACACTATCATATACAGGAACAACCTTTCCATTTCTGAGCGCTCCATGTACCCAACTGCCTACACATTCGACAGAGTATTTAGTACGGATTGCTCCACAAGGCGGGTGTATGAAGAAGGAGCCAAGAAAGTTGCTCTTTCAGTTGCCAGTGGTATAAACTCAAGTATTTTTGCATATGGACAAACAAGTAGTGGAAAGACATACACCATGAGTGGAATTACTGAGTACGCTGTTGCAGATTTATATGACTATATAGATAAGCACGAGGAGAGAGAATTTGTTTTAAAATTTTCTGCTTTGGAGATCTACAACGAATCTGTTAGGGACCTTCTTAGTGCAGATACCACTCCCCTTAGGCTTCTGGATGATCCTGAGAGAGGTACAATTGTTGAAAAACTTACAGAGGAAACTCTAAGGGACTGGAATCATTTCAGAGAACTTCTATCTGTCTGCGAAGCTCAAAGACAGATAGGAGAAACATCTTTAAATGAAGCAAGCTCCAGATCTCATCAGATTCTCAGATTGGTAATAGAAAGTTCAGCACGTGAGTTTCTTGGCTATGACAAGTCAAGCTCCCTTACTGCTATGGTGAACTTTGTCGATCTTGCTGGAAGTGAGCGTGCATCCCAGACATTATCAGCTGGCACAAGGTTGAAAGAGGGTTGCCACATAAATCGCAGTTTACTAACTCTGGGCACTGTTATCCGTAAGCTGAGCAAGGGAAGAAATGGGCATATTCCTTACAGAGATTCAAAGCTAACCCGCATACTACAGTCCTCCTTAGGAGGAAATGCTAGAACTGCCATCATCTGTACTTTGAGTCCTGCACATAGCCATGTTGAGCAATCAAGAAACACCCTTTTGTTTGCAAGTTGTGCTAAAGAAGTGACAACAAATGCACAGGTTAATGTAGTCATGTCAGATAAAACATTGGTGAAGCATTTGCAAAAGCAATTGGCTAAATTAGAGAATGAGTTGAAATCTTCGGGATCAAAAATTGTTCCAGCTGATTCTTATACTTTACTGAGAGAAAAAGACCTTCAAATTGAAAAGCTTAAGAAAGAGGTGTCAGAGCTGACTCTGCAACGAGACCTTGCTCAGTCTCAGGTTAAGGATCTGGTACGAGTGCTTGAAGATGATAAACCATCACCAGCGGATTTGGATCGTTATTACCCCAAATTGCGAGTGCGAAATTCATGGGAGAACATTGAAATTCAACCTTCAGCAATACCTGTTCTGGCTGGTTCTCACCACCGCCGAGGCAGTGTTAGATCTTTTTCCACATCTCAGTATTCAGATGTAGACAGTAGGACTAGTTCTGATGATACTTTACTCCAACTTCCGGACTTTGATGACAATTTCCTGATCCCACACTCGTTCTCCTCCAGCCAGTTGCCAGTTAGATTTCCTAATTCCATTGATGCCAATCTGCATCAGGAGGAGAACAAAGAACAGTCTGATGTAAATTCAGAAGATGTTTGCAAAGAAGTTCGGTGCATTGAAATGGAAGAGTCAAGCACAAACAGATATGTAGCATCAAATATATCAGATTCAAGCAGAAGCAGATACCAAAACTCAAATCTGTCATCTCCTGCAGCAAACACACCTACCTCAGGATTGACAGTGGTTGAGAATGGAGATGGCACCAATAAAGAATTGCAGTCTCCCCTATTGAACCATAAAGGTTTTGTGATTCAATCTCCTGAAAAGACATCCCAATGGCTCCCAGAGGAACAGATGTCAACCCCCTTGATCTACAAGTTAAGGCGGAGTAGAAGTTGTAAAGCAAGTCTTGTGACTACGTTCTCTTCATGTTGGCTTGAGATGGTAGAGAAGAATGAGAACACGCCTTTGATTGAGTTTGAGAAAAGTTATAATGAGAGCACACCTCCAACCGAGTTTGAGAAAAATTTTGTAGGAAGGCCCAAGGTTCTGCAAAAGAAACTTCCTTCATTCAAGTATGATGATTCTCAGGCTTCTGCAAGAACTGCAGCAGCTTCTGATGAGTGTAAACTGCAGAATACCGAATCCACAACTAATGATGAGAGTATTGAAACAAGTTCTTTAGGTGAAGAAACAAAGGAAACAACCACAACTGATGACAAGACTATTGAAAGCAGTTCTTTAGTTGAAGAAACAAATGAAGTGACTACAACTAATGACAAGGCTACTGAAAGCAGTTCTCTAGTTGAAGGAACAAAGGAAATGGTGGACACCCAGTGCATTACTCAACTTGCTGATTCTATGGAGACAGATACAAAGCCTATACCAGAGACAGGTTTAAGGCCCAATCCATCTACAAGGGATGTGAAAGATGTTGGCTTGGACCCAATGCCTATGGATGAGGAAAGCGATTCAATGTGGCCATCAGAATTCAAGAGGCTGCAAAGAGAGATTGTTGAACTTTGGCATGCTTGCAATGTGTCATTGGTTCACAGGACTTACTTCTTCCTGCTTTTTAAAGGTGATCCAAGTGATTCTATATACATGGAGGTTGAACTCAGGAGATTGTCCTTCCTCAAAGGCACATTTCTTAAGGGAGATCAAGCTTTGGAAGATGGTCTAACACCCGCTTCAAGCCTGAGGGCTTTATGCAGTGAGAGACACATGCTGAGCAAGCAAATGAGCAAGAGGCTCTCCAAAGATGAAAGAGATAACCTCTACCTGAAGTGGGGTATTGGGCTAAACTCAAAGAATAGGAGGTTGCAATTGGCGAACCGCCTGTGGAGTGACACAAACAACATGGATCACATCGCAGATAGTGCCAATGTTGTTGCGAAGCTGGTTGGTTCAGTAGAGCCAGAGCAGGCTTTCAAGGAGATGTTTGGACTCAGATTTACACCTCGAGACACAATTACGAGGCGGAGATCTTACCGTTGGACAGAAAGTTTGAAGCATCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009506 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0030054 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048285 GO:0051225 GO:0055044 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

1014

Amino Acids

114.45

Weight (kDa)

5.43

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	23 - 157	4.6e-20	Microtubule binding
Kinesin	PF00225	24 - 342	2.9e-99	Kinesin motor domain
DUF3490	PF11995	837 - 995	4.8e-74	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51150 AT3G51150 AT3G51150 AT3G51150 AT3G51150 AT5G66310 AT5G66310 AT5G66310
fragaria_vesca	FvH4_1g12070 FvH4_1g12070 FvH4_1g12070 FvH4_1g12070 FvH4_1g12070 FvH4_1g12070 FvH4_1g12070
malus_domestica	MD00G1176100.v1.1 MD02G1110400.v1.1 MD02G1135300.v1.1 MD15G1248100.v1.1
prunus_persica	Prupe.7G166000_v2.0.a1 Prupe.7G166000_v2.0.a1
pyrus_communis	pycom02g10640 pycom15g21790
rosa_chinensis	RchiOBHm_Chr2g0099691
rosa_laevigata	RLG00000016906
rosa_multiflora	Rmu_sc0004019.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142830
rosa_rugosa	Rorug02G0082100 Rorug02G0082200 Rorug02G0082300 Rorug02G0082400
rosa_samantha	Rh2AG131700 Rh2BG135000 Rh2CG135900 Rh2DG136400
rosa_wichuraiana	Rw2G010220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2013
AccB1I	GGYRCC	1 cut(s)	1781
AccI	GTMKAC	1 cut(s)	1440
AccIII	TCCGGA	1 cut(s)	1480
AciI	CCGC	8 cut(s)	241, 901, 1292, 1393, 1906, 2709, 2857, 3001
AclWI	GGATC	7 cut(s)	500, 1135, 1260, 1308, 1498, 2600, 2892
AcoI	YGGCCR	2 cut(s)	6, 2501
AcsI	RAATTY	7 cut(s)	413, 425, 1330, 1350, 1603, 2047, 2510
AcuI	CTGAAG	2 cut(s)	1344, 2825
AcvI	CACGTG	1 cut(s)	683
AdeI	CACNNNGTG	1 cut(s)	2358
AfaI	GTAC	6 cut(s)	188, 223, 365, 520, 952, 1260
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	7 cut(s)	44, 240, 515, 1480, 1751, 2414, 2809
AflII	CTTAAG	2 cut(s)	1193, 2672
AhlI	ACTAGT	1 cut(s)	1451
AjnI	CCWGG	2 cut(s)	37, 101
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
Alw21I	GWGCWC	1 cut(s)	2024
Alw26I	GTCTC	8 cut(s)	89, 1221, 1245, 1806, 2381, 2405, 2734, 2979
AlwI	GGATC	7 cut(s)	500, 1135, 1260, 1308, 1498, 2600, 2892
AlwNI	CAGNNNCTG	1 cut(s)	2138
Ama87I	CYCGRG	1 cut(s)	2982
Aor13HI	TCCGGA	1 cut(s)	1480
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	5 cut(s)	6, 40, 2060, 2423, 2501
ApeKI	GCWGC	5 cut(s)	73, 1733, 2129, 2132, 2521
ApoI	RAATTY	7 cut(s)	413, 425, 1330, 1350, 1603, 2047, 2510
ArsI	GACNNNNNNTTYG	2 cut(s)	3010, 3042
AseI	ATTAAT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	463, 2061, 2424, 2464
AsuHPI	GGTGA	7 cut(s)	26, 739, 1084, 1278, 1379, 2219, 2615
AvaI	CYCGRG	1 cut(s)	2982
AvaII	GGWCC	2 cut(s)	463, 2464
AxyI	CCTNAGG	4 cut(s)	491, 919, 1750, 2720
BaeGI	GKGCMC	1 cut(s)	836
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BalI	TGGCCA	2 cut(s)	8, 2503
BanI	GGYRCC	1 cut(s)	1781
BauI	CACGAG	1 cut(s)	401
BbrPI	CACGTG	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	2024
BbvI	GCAGC	5 cut(s)	60, 1745, 2141, 2144, 2508
BccI	CCATC	7 cut(s)	950, 1291, 1772, 1957, 2440, 2512, 2690
BciT130I	CCWGG	2 cut(s)	39, 103
BciVI	GTATCC	1 cut(s)	48
BcoDI	GTCTC	8 cut(s)	89, 1221, 1245, 1806, 2381, 2405, 2734, 2979
BcuI	ACTAGT	1 cut(s)	1451
BfaI	CTAG	3 cut(s)	933, 1452, 2324
BfmI	CTRYAG	4 cut(s)	908, 1731, 2127, 2153
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	2 cut(s)	1193, 2672
BfuI	GTATCC	1 cut(s)	48
BglII	AGATCT	4 cut(s)	441, 641, 1409, 3005
BisI	GCNGC	5 cut(s)	74, 1734, 2130, 2133, 2522
BlpI	GCTNAGC	2 cut(s)	851, 2750
BlsI	GCNGC	5 cut(s)	75, 1735, 2131, 2134, 2523
Bme1390I	CCNGG	2 cut(s)	39, 103
Bme18I	GGWCC	2 cut(s)	463, 2464
BmeT110I	CYCGRG	1 cut(s)	2982
BmgT120I	GGNCC	4 cut(s)	463, 2061, 2424, 2464
BmiI	GGNNCC	7 cut(s)	24, 36, 259, 464, 1783, 1862, 2466
BmrFI	CCNGG	2 cut(s)	39, 103
BmrI	ACTGGG	1 cut(s)	2350
BmsI	GCATC	4 cut(s)	770, 1549, 1579, 1682
BmuI	ACTGGG	1 cut(s)	2350
BplI	GAGNNNNNCTC	4 cut(s)	2011, 2043, 2781, 2813
BpmI	CTGGAG	2 cut(s)	622, 1507
Bpu1102I	GCTNAGC	2 cut(s)	851, 2750
BpuEI	CTTGAG	2 cut(s)	283, 1979
BsaAI	YACGTR	1 cut(s)	683
BsaBI	GATNNNNATC	2 cut(s)	1299, 1563
BsaI	GGTCTC	1 cut(s)	1221
BsaJI	CCNNGG	3 cut(s)	43, 1396, 2064
BsaWI	WCCGGW	1 cut(s)	1480
BsaXI	ACNNNNNCTCC	4 cut(s)	1502, 1532, 1900, 1930
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 240, 515, 1480, 1751, 2414, 2809
Bse1I	ACTGG	5 cut(s)	285, 563, 1528, 1535, 2356
Bse21I	CCTNAGG	4 cut(s)	491, 919, 1750, 2720
Bse3DI	GCAATG	1 cut(s)	2563
Bse8I	GATNNNNATC	2 cut(s)	1299, 1563
BseAI	TCCGGA	1 cut(s)	1480
BseBI	CCWGG	2 cut(s)	39, 103
BseDI	CCNNGG	3 cut(s)	43, 1396, 2064
BseGI	GGATG	5 cut(s)	508, 761, 1850, 2449, 2485
BseJI	GATNNNNATC	2 cut(s)	1299, 1563
BseLI	CCNNNNNNNGG	7 cut(s)	44, 240, 515, 1480, 1751, 2414, 2809
BseMI	GCAATG	1 cut(s)	2563
BseNI	ACTGG	5 cut(s)	285, 563, 1528, 1535, 2356
BseRI	GAGGAG	5 cut(s)	32, 35, 419, 1510, 1592
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	5 cut(s)	60, 1745, 2141, 2144, 2508
BsgI	GTGCAG	2 cut(s)	495, 948
BshFI	GGCC	5 cut(s)	8, 42, 2062, 2425, 2503
BshNI	GGYRCC	1 cut(s)	1781
BsiHKAI	GWGCWC	1 cut(s)	2024
BsiHKCI	CYCGRG	1 cut(s)	2982
BsiSI	CCGG	1 cut(s)	1481
BslFI	GGGAC	2 cut(s)	476, 569
BslI	CCNNNNNNNGG	7 cut(s)	44, 240, 515, 1480, 1751, 2414, 2809
BsmAI	GTCTC	8 cut(s)	89, 1221, 1245, 1806, 2381, 2405, 2734, 2979
BsmFI	GGGAC	2 cut(s)	476, 569
BsnI	GGCC	5 cut(s)	8, 42, 2062, 2425, 2503
Bso31I	GGTCTC	1 cut(s)	1221
BsoBI	CYCGRG	1 cut(s)	2982
Bsp1286I	GDGCHC	2 cut(s)	836, 2024
Bsp13I	TCCGGA	1 cut(s)	1480
Bsp1720I	GCTNAGC	2 cut(s)	851, 2750
BspACI	CCGC	8 cut(s)	241, 901, 1292, 1393, 1906, 2709, 2857, 3001
BspANI	GGCC	5 cut(s)	8, 42, 2062, 2425, 2503
BspEI	TCCGGA	1 cut(s)	1480
BspLI	GGNNCC	7 cut(s)	24, 36, 259, 464, 1783, 1862, 2466
BspMAI	CTGCAG	3 cut(s)	1735, 2131, 2157
BspPI	GGATC	7 cut(s)	500, 1135, 1260, 1308, 1498, 2600, 2892
BspT107I	GGYRCC	1 cut(s)	1781
BspTI	CTTAAG	2 cut(s)	1193, 2672
BspTNI	GGTCTC	1 cut(s)	1221
BsrDI	GCAATG	1 cut(s)	2563
BsrI	ACTGG	5 cut(s)	285, 563, 1528, 1535, 2356
BssECI	CCNNGG	3 cut(s)	43, 1396, 2064
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	2064
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	39, 103
Bst4CI	ACNGT	6 cut(s)	838, 912, 1445, 1593, 1762, 3014
Bst6I	CTCTTC	2 cut(s)	1641, 1951
BstAFI	CTTAAG	2 cut(s)	1193, 2672
BstAPI	GCANNNNNTGC	3 cut(s)	1013, 2126, 2900
BstBAI	YACGTR	1 cut(s)	683
BstC8I	GCNNGC	7 cut(s)	634, 759, 781, 2550, 2554, 2756, 2946
BstDSI	CCRYGG	1 cut(s)	43
BstENI	CCTNNNNNAGG	2 cut(s)	513, 1749
BstF5I	GGATG	5 cut(s)	508, 761, 1850, 2449, 2485
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstMAI	GTCTC	8 cut(s)	89, 1221, 1245, 1806, 2381, 2405, 2734, 2979
BstMWI	GCNNNNNNNGC	6 cut(s)	938, 1013, 1219, 2126, 2755, 2900
BstNI	CCWGG	2 cut(s)	39, 103
BstNSI	RCATGY	2 cut(s)	2552, 2749
BstSCI	CCNGG	2 cut(s)	37, 101
BstSFI	CTRYAG	4 cut(s)	908, 1731, 2127, 2153
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	5 cut(s)	60, 1745, 2141, 2144, 2508
BstX2I	RGATCY	5 cut(s)	441, 641, 1252, 1409, 3005
BstYI	RGATCY	5 cut(s)	441, 641, 1252, 1409, 3005
Bsu36I	CCTNAGG	4 cut(s)	491, 919, 1750, 2720
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	5 cut(s)	8, 42, 2062, 2425, 2503
BtgI	CCRYGG	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	2875
BtsCI	GGATG	5 cut(s)	508, 761, 1850, 2449, 2485
BtsI	GCAGTG	2 cut(s)	1408, 2740
BtsIMutI	CAGTG	6 cut(s)	292, 834, 1408, 1767, 2363, 2740
Cac8I	GCNNGC	7 cut(s)	634, 759, 781, 2550, 2554, 2756, 2946
CaiI	CAGNNNCTG	1 cut(s)	2138
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	463, 2061, 2424, 2464
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	6 cut(s)	187, 222, 364, 519, 951, 1259
CviQI	GTAC	6 cut(s)	187, 222, 364, 519, 951, 1259
DraI	TTTAAA	3 cut(s)	423, 624, 2599
DraIII	CACNNNGTG	1 cut(s)	2358
EaeI	YGGCCR	2 cut(s)	6, 2501
Eam1104I	CTCTTC	2 cut(s)	1641, 1951
EarI	CTCTTC	2 cut(s)	1641, 1951
EciI	GGCGGA	2 cut(s)	1921, 3016
Eco130I	CCWWGG	1 cut(s)	2064
Eco31I	GGTCTC	1 cut(s)	1221
Eco47I	GGWCC	2 cut(s)	463, 2464
Eco47III	AGCGCT	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	1344, 2825
Eco72I	CACGTG	1 cut(s)	683
Eco81I	CCTNAGG	4 cut(s)	491, 919, 1750, 2720
Eco88I	CYCGRG	1 cut(s)	2982
EcoNI	CCTNNNNNAGG	2 cut(s)	513, 1749
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	2510
EcoRII	CCWGG	2 cut(s)	37, 101
EcoT14I	CCWWGG	1 cut(s)	2064
ErhI	CCWWGG	1 cut(s)	2064
FalI	AAGNNNNNCTT	6 cut(s)	258, 290, 1914, 1946, 2245, 2277
FaqI	GGGAC	2 cut(s)	476, 569
FauI	CCCGC	3 cut(s)	234, 908, 2716
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	1440
Fnu4HI	GCNGC	5 cut(s)	74, 1734, 2130, 2133, 2522
FokI	GGATG	5 cut(s)	515, 748, 1837, 2456, 2492
Fsp4HI	GCNGC	5 cut(s)	74, 1734, 2130, 2133, 2522
FspBI	CTAG	3 cut(s)	933, 1452, 2324
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	74, 1734, 2130, 2133, 2522
GsuI	CTGGAG	2 cut(s)	622, 1507
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	5 cut(s)	8, 42, 2062, 2425, 2503
HapII	CCGG	1 cut(s)	1481
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	1881
HindII	GTYRAC	1 cut(s)	1881
HindIII	AAGCTT	2 cut(s)	1190, 2685
HpaII	CCGG	1 cut(s)	1481
HphI	GGTGA	7 cut(s)	26, 739, 1084, 1278, 1379, 2219, 2615
Hpy166II	GTNNAC	7 cut(s)	730, 821, 1441, 1881, 2150, 2350, 2572
Hpy8I	GTNNAC	7 cut(s)	730, 821, 1441, 1881, 2150, 2350, 2572
HpyAV	CCTTC	9 cut(s)	85, 248, 476, 1187, 1368, 2052, 2097, 2324, 2662
HpyCH4III	ACNGT	6 cut(s)	838, 912, 1445, 1593, 1762, 3014
HpyCH4IV	ACGT	2 cut(s)	682, 1940
HpyF10VI	GCNNNNNNNGC	6 cut(s)	938, 1013, 1219, 2126, 2755, 2900
HpySE526I	ACGT	2 cut(s)	682, 1940
HspAI	GCGC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	1480
LmnI	GCTCC	8 cut(s)	22, 34, 185, 236, 257, 641, 716, 1866
Lsp1109I	GCAGC	5 cut(s)	60, 1745, 2141, 2144, 2508
LweI	GCATC	4 cut(s)	770, 1549, 1579, 1682
MaeI	CTAG	3 cut(s)	933, 1452, 2324
MaeII	ACGT	2 cut(s)	682, 1940
MaeIII	GTNAC	4 cut(s)	1024, 1933, 2284, 2867
MfeI	CAATTG	3 cut(s)	522, 1091, 2846
MflI	RGATCY	5 cut(s)	441, 641, 1252, 1409, 3005
MhlI	GDGCHC	2 cut(s)	836, 2024
MlsI	TGGCCA	2 cut(s)	8, 2503
MluNI	TGGCCA	2 cut(s)	8, 2503
MlyI	GAGTC	4 cut(s)	967, 1210, 1658, 2961
MmeI	TCCRAC	4 cut(s)	96, 1498, 2054, 2996
Mox20I	TGGCCA	2 cut(s)	8, 2503
MroI	TCCGGA	1 cut(s)	1480
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	2 cut(s)	8, 2503
MslI	CAYNNNNRTG	3 cut(s)	972, 1640, 1855
Msp20I	TGGCCA	2 cut(s)	8, 2503
MspA1I	CMGCKG	3 cut(s)	779, 1145, 1292
MspCI	CTTAAG	2 cut(s)	1193, 2672
MspI	CCGG	1 cut(s)	1481
MspR9I	CCNGG	2 cut(s)	39, 103
MunI	CAATTG	3 cut(s)	522, 1091, 2846
MvaI	CCWGG	2 cut(s)	39, 103
MwoI	GCNNNNNNNGC	6 cut(s)	938, 1013, 1219, 2126, 2755, 2900
NdeI	CATATG	1 cut(s)	313
NlaIV	GGNNCC	7 cut(s)	24, 36, 259, 464, 1783, 1862, 2466
NmeAIII	GCCGAG	1 cut(s)	1421
NmuCI	GTSAC	4 cut(s)	1024, 1933, 2284, 2867
NspI	RCATGY	2 cut(s)	2552, 2749
PaeI	GCATGC	1 cut(s)	2552
PaeR7I	CTCGAG	1 cut(s)	2982
PdmI	GAANNNNTTC	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	75, 1735, 2131, 2134, 2523
PleI	GAGTC	4 cut(s)	966, 1210, 1657, 2961
PmaCI	CACGTG	1 cut(s)	683
PmlI	CACGTG	1 cut(s)	683
PpsI	GAGTC	4 cut(s)	966, 1210, 1657, 2961
Ppu21I	YACGTR	1 cut(s)	683
PpuMI	RGGWCCY	1 cut(s)	463
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	2013
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	2 cut(s)	37, 101
PspCI	CACGTG	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	37, 101
PspN4I	GGNNCC	7 cut(s)	24, 36, 259, 464, 1783, 1862, 2466
PspPI	GGNCC	4 cut(s)	463, 2061, 2424, 2464
PspPPI	RGGWCCY	1 cut(s)	463
PsrI	GAACNNNNNNTAC	2 cut(s)	1438, 1470
PstI	CTGCAG	3 cut(s)	1735, 2131, 2157
PstNI	CAGNNNCTG	1 cut(s)	2138
PsuI	RGATCY	5 cut(s)	441, 641, 1252, 1409, 3005
PvuII	CAGCTG	2 cut(s)	779, 1145
RsaI	GTAC	6 cut(s)	188, 223, 365, 520, 952, 1260
RsaNI	GTAC	6 cut(s)	187, 222, 364, 519, 951, 1259
RseI	CAYNNNNRTG	3 cut(s)	972, 1640, 1855
SatI	GCNGC	5 cut(s)	74, 1734, 2130, 2133, 2522
Sau96I	GGNCC	4 cut(s)	463, 2061, 2424, 2464
SchI	GAGTC	4 cut(s)	967, 1210, 1658, 2961
ScrFI	CCNGG	2 cut(s)	39, 103
SduI	GDGCHC	2 cut(s)	836, 2024
SfaNI	GCATC	4 cut(s)	770, 1549, 1579, 1682
SfcI	CTRYAG	4 cut(s)	908, 1731, 2127, 2153
Sfr274I	CTCGAG	1 cut(s)	2982
SinI	GGWCC	2 cut(s)	463, 2464
SlaI	CTCGAG	1 cut(s)	2982
SmiMI	CAYNNNNRTG	3 cut(s)	972, 1640, 1855
SmlI	CTYRAG	5 cut(s)	298, 1193, 1958, 2672, 2982
SmoI	CTYRAG	5 cut(s)	298, 1193, 1958, 2672, 2982
SpeI	ACTAGT	1 cut(s)	1451
SphI	GCATGC	1 cut(s)	2552
SsiI	CCGC	8 cut(s)	241, 901, 1292, 1393, 1906, 2709, 2857, 3001
SspMI	CTAG	3 cut(s)	933, 1452, 2324
StyD4I	CCNGG	2 cut(s)	37, 101
StyI	CCWWGG	1 cut(s)	2064
TaaI	ACNGT	6 cut(s)	838, 912, 1445, 1593, 1762, 3014
TaiI	ACGT	2 cut(s)	685, 1943
TaqI	TCGA	3 cut(s)	207, 738, 2983
TatI	WGTACW	1 cut(s)	950
TscAI	CASTG	6 cut(s)	292, 841, 1408, 1767, 2363, 2740
TseFI	GTSAC	4 cut(s)	1024, 1933, 2284, 2867
TseI	GCWGC	5 cut(s)	73, 1733, 2129, 2132, 2521
Tsp45I	GTSAC	4 cut(s)	1024, 1933, 2284, 2867
TspDTI	ATGAA	7 cut(s)	264, 642, 1323, 1938, 2079, 2295, 2799
TspGWI	ACGGA	2 cut(s)	239, 833
TspRI	CASTG	6 cut(s)	292, 841, 1408, 1767, 2363, 2740
Vha464I	CTTAAG	2 cut(s)	1193, 2672
VpaK11BI	GGWCC	2 cut(s)	463, 2464
VspI	ATTAAT	1 cut(s)	132
XagI	CCTNNNNNAGG	2 cut(s)	513, 1749
XapI	RAATTY	7 cut(s)	413, 425, 1330, 1350, 1603, 2047, 2510
XceI	RCATGY	2 cut(s)	2552, 2749
XhoI	CTCGAG	1 cut(s)	2982
XmiI	GTMKAC	1 cut(s)	1440
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	3 cut(s)	933, 1452, 2324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.