Rroxscaffold_2G00152850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011048
Physical Location & Seq
Forward (+)
89692418 .. 89696332
3915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152850.1

Sequence Viewer

Length: 2247 bp
ATGGACGACGAAACGACACCGTCCAGGGGCTTCTACGCCACGAGAGGCGCCCGCGCCGGAGGCAAACTGAGGAAGCCGCCGTCCCGCAAGCCGCCGACGACTCCTTACTCCCGTCCGCCTCCGAACCCAGCCGAGCGAGGCAAGCGGCGGTGGCTGTCCAGCGTCGTTGATCCGGCTTATCGGCTCATCTCCGGCGGCGCCGCTCGGCTTTTCACCTCCTTCTTCTCGCCGGCGAATACTGTTAATGCCCTTCCCGCGCCTAATCACGTTTGTGAGATATCGTGGACAGATGAACAGGAGGCGGAGATTGAACAGAATGCTACTGGTGACGAGCACAATGATGATTCAATTTGGTTTCATGCTGTTAAAGTCGGCATTGTTATCGTTTTTTTGCTCTACTCATATGGTGATAGGTTTAGGGTACGTACTAATGGTGGTTATTTTGTGCTTGTGAATTGGGTGACCAGAACCGAAACAGCAGGTCCTAGCAGGCCAGGAAATAGTTCAAACGATAGTTCTGGTTTTCAAGGCCACACTTTAGATGACAACAGCAACCTGTCTGATGTGAGTGGACTTTCTCAAATTGAGCAGCTACTGAAGGGGAAAAAGTTTTCTAGGCAAGTCTTGCATTTGTCATATCTGGCCTCTCTAAACTCGCTCCTCTCTATCAGGGACGAAGTCAATCGCCTGATGGATATTATTCAATCAAAGGCTGTTGAGCATCCTACTGTGGGGCATGAAAAGGTAAAAAAAGGCATTACTGCTGGAGGAGAAGCCAGGGGGCCTGTAAATGCCCATGCTGTTCAAAAGGCGTCATCTGGAGAAATTCAGGAAGACATGAGTAAAGCTATTTGGGGAACATCAACCCCTCTTCCCCTGTCAGCTAGGCGAGAGGAGGTTGGCGCTTCACCTATTGAAATTGCAAAAGCATATATGGGAAGCAGAACATCGGATATTGATGATGGGGCAGCAATGCATAGTAATGATATTGAATCAACACCATTCATTCCAGCATCTTCCCCTAAGCCATCAACATGTTGGCCTGGTTCCATGGTACAAAACCAACGCGATTATTCAACCCCACAGAGTGAAAGAGGCAGATTTGGCCTTCATAATTTTCCCAGAACCCCTTATTCTAGAACTATCTTTTCAAAATCCAAGTCCAAGCAGTTTACTCCATTACAAGGTGGTGATTTTAAGTCCCAAAGAACATCATCAACTCCTTTTAAGCACTTGCAAACTCCTGTATATGGGCAGACATTTGGGAAGCCAAGAGATGATGCATTGGATGGTGGCTATGCATCATCAGTAGGACCAATTCGCAGAACACGCCATAAAGTTGCTACACAAACTCCTCCTAGAGGATCTCCTTATGTTCATTTATCTTCAATTGGAACTCCACAGGTGGAAAATTCCCACATCCGCAAAGAATTTTTGCCTGCTGGCAGGAAGAATTTTGAACTTGGAGGATTAAGTGGCAACTCCCCGTTCCAGTCAATAGATAGAAAGCCTTCCAGCTCTCAAGTTGGTGTTCATCCACAGTATAGTCAGATTGCAAGGACAATTTTGGAGCACATCAATAGAAATTCACCTACTCCTAAAGATAAGTCAGAAGAGTTGAAGCTAGCCATTGCGTGGAAGAAACCCCTACTTCTGATATTCCTTCACTCAACCAGAATGGAAATGATAGCTCACTTCTGGGAGGGTCTAGTTCCCGTTCCACCTCCAAAGCCTAGTGTAAAAGCTGCTGATGCCGTAAGCAATGGTCCTGCTGATGGTGGGAGTGGTGGAAGATCTCTAGCCAAGAGCACAGAGGAGGCTTTTCCACAGACTACTTTAAATGTTGTTGGTTTGGAGGTACTAAATCAACAGAAGAAGCCTCTCTTTCAACCTTCAGGGACTAAACGCGTTTTTCCTGCTATATCTGTTGACAAGCCCGCATCCACATGGAAGTTTTCTTCTGATAAGAGCTCTACCTTCACATTCCCAGTGTCTACATCTTCCGCTGTGTTTTCTGAACCACCCACACCGTCCGTTATGCCATCTGTGTCGACTAGCACTGAGCATCAGCTGAAAGATGGAGATGCTACTGTTCCTACATACAGTTTCGGATCCAAGAAGTCTGATCGCCTTGTGTTTACATTCCCTTCTACCAGTGACGCGATCCAGATTGGTAATTCAGATATTAAGTTCAGCTTTGGATCAGATAAGCCAAGGTTGTCATTCAAAGATGCCGTCTGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

748

Amino Acids

81.58

Weight (kDa)

9.53

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20200
fragaria_vesca FvH4_1g03050 FvH4_1g03050
malus_domestica MD02G1029800.v1.1 MD15G1171200.v1.1
prunus_persica Prupe.7G245100_v2.0.a1 Prupe.7G245100_v2.0.a1
pyrus_communis pycom02g02480 pycom15g15280
rosa_chinensis RchiOBHm_Chr2g0088181
rosa_laevigata RLG00000015929
rosa_multiflora Rmu_sc0003275.1_g000068
rosa_roxburghii Rroxscaffold_2G00152850
rosa_rugosa Rorug01G0481400 Rorug01G0481500
rosa_samantha Rh2AG036600 Rh2BG035800 Rh2CG036900 Rh2DG036300
rosa_wichuraiana Rw2G002880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 47, 197
AccB7I CCANNNNNTGG 1 cut(s) 1635
AccBSI CCGCTC 1 cut(s) 203
AccI GTMKAC 2 cut(s) 1994, 2051
AccII CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
AclWI GGATC 6 cut(s) 164, 1372, 2106, 2119, 2158, 2209
AcsI RAATTY 5 cut(s) 825, 1411, 1430, 1453, 1585
AcuI CTGAAG 2 cut(s) 617, 1878
AcyI GRCGYC 3 cut(s) 48, 198, 812
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 4 cut(s) 423, 427, 1056, 1860
AfiI CCNNNNNNNGG 7 cut(s) 26, 731, 1184, 1250, 1361, 1635, 1775
AflIII ACRYGT 2 cut(s) 1034, 1906
AjnI CCWGG 4 cut(s) 23, 493, 776, 1042
AleI CACNNNNGTG 1 cut(s) 270
Alw21I GWGCWC 4 cut(s) 336, 1575, 1811, 1973
AlwI GGATC 6 cut(s) 164, 1372, 2106, 2119, 2158, 2209
AlwNI CAGNNNCTG 1 cut(s) 595
AoxI GGCC 6 cut(s) 491, 529, 642, 782, 1040, 1105
ApeKI GCWGC 3 cut(s) 589, 968, 1745
ApoI RAATTY 5 cut(s) 825, 1411, 1430, 1453, 1585
ArsI GACNNNNNNTTYG 3 cut(s) 1145, 1177, 2220
Asp700I GAANNNNTTC 2 cut(s) 502, 1510
AspLEI GCGC 5 cut(s) 50, 56, 200, 259, 905
AspS9I GGNCC 4 cut(s) 482, 782, 1313, 1766
AsuHPI GGTGA 7 cut(s) 205, 338, 419, 472, 900, 1202, 1581
AsuNHI GCTAGC 1 cut(s) 1624
AvaII GGWCC 3 cut(s) 482, 1313, 1766
BamHI GGATCC 1 cut(s) 2111
BanI GGYRCC 2 cut(s) 47, 197
BanII GRGCYC 1 cut(s) 1973
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 4 cut(s) 336, 1575, 1811, 1973
BbvI GCAGC 3 cut(s) 601, 980, 1732
BccI CCATC 7 cut(s) 685, 956, 1036, 1283, 1769, 2050, 2072
BceAI ACGGC 3 cut(s) 64, 1739, 2219
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 4 cut(s) 25, 495, 778, 1044
BfoI RGCGCY 3 cut(s) 51, 201, 906
BfuAI ACCTGC 1 cut(s) 470
BglII AGATCT 1 cut(s) 1793
BisI GCNGC 8 cut(s) 77, 92, 146, 196, 201, 590, 969, 1746
BlsI GCNGC 8 cut(s) 78, 93, 147, 197, 202, 591, 970, 1747
Bme1390I CCNGG 4 cut(s) 25, 495, 778, 1044
Bme18I GGWCC 3 cut(s) 482, 1313, 1766
BmgT120I GGNCC 4 cut(s) 482, 782, 1313, 1766
BmiI GGNNCC 5 cut(s) 49, 199, 783, 1048, 2113
BmrFI CCNGG 4 cut(s) 25, 495, 778, 1044
BmrI ACTGGG 1 cut(s) 1982
BmsI GCATC 9 cut(s) 730, 1022, 1270, 1310, 1741, 1949, 2074, 2074, 2221
BmtI GCTAGC 1 cut(s) 1628
BmuI ACTGGG 1 cut(s) 1982
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 2 cut(s) 786, 840
Bpu10I CCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 1506
BsaAI YACGTR 1 cut(s) 425
BsaHI GRCGYC 3 cut(s) 48, 198, 812
BsaJI CCNNGG 4 cut(s) 24, 777, 1050, 2213
BsaXI ACNNNNNCTCC 2 cut(s) 1336, 1366
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 731, 1184, 1250, 1361, 1635, 1775
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 4 cut(s) 328, 1492, 1988, 2154
Bse3DI GCAATG 3 cut(s) 978, 1629, 1768
BseBI CCWGG 4 cut(s) 25, 495, 778, 1044
BseDI CCNNGG 4 cut(s) 24, 777, 1050, 2213
BseGI GGATG 5 cut(s) 721, 1294, 1419, 1534, 1940
BseLI CCNNNNNNNGG 7 cut(s) 26, 731, 1184, 1250, 1361, 1635, 1775
BseMI GCAATG 3 cut(s) 978, 1629, 1768
BseMII CTCAG 2 cut(s) 59, 2052
BseNI ACTGG 4 cut(s) 328, 1492, 1988, 2154
BseRI GAGGAG 5 cut(s) 650, 783, 908, 1344, 1829
BseXI GCAGC 3 cut(s) 601, 980, 1732
BseYI CCCAGC 1 cut(s) 127
Bsh1236I CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
BshFI GGCC 6 cut(s) 493, 531, 644, 784, 1042, 1107
BshNI GGYRCC 2 cut(s) 47, 197
BsiHKAI GWGCWC 4 cut(s) 336, 1575, 1811, 1973
BsiSI CCGG 4 cut(s) 57, 173, 192, 230
BslFI GGGAC 4 cut(s) 67, 686, 1186, 1912
BslI CCNNNNNNNGG 7 cut(s) 26, 731, 1184, 1250, 1361, 1635, 1775
BsmFI GGGAC 4 cut(s) 67, 686, 1186, 1912
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 6 cut(s) 493, 531, 644, 784, 1042, 1107
Bsp1286I GDGCHC 4 cut(s) 336, 1575, 1811, 1973
Bsp143I GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
Bsp19I CCATGG 1 cut(s) 1050
BspANI GGCC 6 cut(s) 493, 531, 644, 784, 1042, 1107
BspCNI CTCAG 2 cut(s) 60, 2053
BspFNI CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
BspLI GGNNCC 5 cut(s) 49, 199, 783, 1048, 2113
BspMI ACCTGC 1 cut(s) 470
BspOI GCTAGC 1 cut(s) 1628
BspPI GGATC 6 cut(s) 164, 1372, 2106, 2119, 2158, 2209
BspT107I GGYRCC 2 cut(s) 47, 197
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 3 cut(s) 978, 1629, 1768
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 4 cut(s) 328, 1492, 1988, 2154
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 4 cut(s) 24, 777, 1050, 2213
BssMI GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
BssNI GRCGYC 3 cut(s) 48, 198, 812
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 1050, 2213
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 4 cut(s) 25, 495, 778, 1044
Bst4CI ACNGT 7 cut(s) 21, 241, 730, 1542, 2031, 2092, 2105
Bst6I CTCTTC 2 cut(s) 876, 1608
BstACI GRCGYC 3 cut(s) 48, 198, 812
BstAPI GCANNNNNTGC 1 cut(s) 625
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 9 cut(s) 52, 89, 143, 231, 491, 1440, 1444, 1626, 1938
BstDEI CTNAG 3 cut(s) 68, 1023, 2061
BstDSI CCRYGG 1 cut(s) 1050
BstEII GGTNACC 1 cut(s) 460
BstENI CCTNNNNNAGG 1 cut(s) 1359
BstF5I GGATG 5 cut(s) 721, 1294, 1419, 1534, 1940
BstFNI CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
BstH2I RGCGCY 3 cut(s) 51, 201, 906
BstHHI GCGC 5 cut(s) 50, 56, 200, 259, 905
BstKTI GATC 7 cut(s) 172, 1367, 1796, 2114, 2128, 2166, 2204
BstMBI GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
BstMWI GCNNNNNNNGC 8 cut(s) 60, 142, 151, 254, 625, 1104, 1329, 1751
BstNI CCWGG 4 cut(s) 25, 495, 778, 1044
BstNSI RCATGY 1 cut(s) 1038
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 4 cut(s) 23, 493, 776, 1042
BstSNI TACGTA 1 cut(s) 425
BstUI CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
BstV1I GCAGC 3 cut(s) 601, 980, 1732
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 3 cut(s) 1364, 1793, 2111
BstYI RGATCY 3 cut(s) 1364, 1793, 2111
BsuRI GGCC 6 cut(s) 493, 531, 644, 784, 1042, 1107
BtgI CCRYGG 1 cut(s) 1050
BtsCI GGATG 5 cut(s) 721, 1294, 1419, 1534, 1940
BtsIMutI CAGTG 3 cut(s) 1995, 2058, 2161
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 9 cut(s) 52, 89, 143, 231, 491, 1440, 1444, 1626, 1938
CaiI CAGNNNCTG 1 cut(s) 595
CfoI GCGC 5 cut(s) 50, 56, 200, 259, 905
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 482, 782, 1313, 1766
CseI GACGC 3 cut(s) 151, 801, 2168
Csp6I GTAC 4 cut(s) 422, 426, 1055, 1859
CviAII CATG 7 cut(s) 359, 737, 797, 838, 1035, 1051, 1947
CviQI GTAC 4 cut(s) 422, 426, 1055, 1859
DdeI CTNAG 3 cut(s) 68, 1023, 2061
DinI GGCGCC 2 cut(s) 49, 199
DpnI GATC 7 cut(s) 171, 1366, 1795, 2113, 2127, 2165, 2203
DpnII GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
DraI TTTAAA 1 cut(s) 1839
DraIII CACNNNGTG 1 cut(s) 1088
Eam1104I CTCTTC 2 cut(s) 876, 1608
EarI CTCTTC 2 cut(s) 876, 1608
EciI GGCGGA 2 cut(s) 105, 317
Ecl136II GAGCTC 1 cut(s) 1971
Eco105I TACGTA 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 1050, 2213
Eco24I GRGCYC 1 cut(s) 1973
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 482, 1313, 1766
Eco53kI GAGCTC 1 cut(s) 1971
Eco57I CTGAAG 2 cut(s) 617, 1878
Eco91I GGTNACC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 1971
EcoNI CCTNNNNNAGG 1 cut(s) 1359
EcoO109I RGGNCCY 2 cut(s) 482, 782
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 4 cut(s) 23, 493, 776, 1042
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 1050, 2213
EcoT22I ATGCAT 3 cut(s) 978, 1285, 1303
EcoT38I GRGCYC 1 cut(s) 1973
EgeI GGCGCC 2 cut(s) 49, 199
EheI GGCGCC 2 cut(s) 49, 199
ErhI CCWWGG 2 cut(s) 1050, 2213
FaeI CATG 7 cut(s) 362, 740, 800, 841, 1038, 1054, 1950
FalI AAGNNNNNCTT 4 cut(s) 1868, 1900, 2180, 2212
FaqI GGGAC 4 cut(s) 67, 686, 1186, 1912
FatI CATG 7 cut(s) 358, 736, 796, 837, 1034, 1050, 1946
FauI CCCGC 4 cut(s) 59, 92, 262, 1945
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 2 cut(s) 1994, 2051
Fnu4HI GCNGC 8 cut(s) 77, 92, 146, 196, 201, 590, 969, 1746
FokI GGATG 5 cut(s) 708, 1301, 1406, 1521, 1927
FriOI GRGCYC 1 cut(s) 1973
Fsp4HI GCNGC 8 cut(s) 77, 92, 146, 196, 201, 590, 969, 1746
GlaI GCGC 5 cut(s) 49, 55, 199, 258, 904
GluI GCNGC 8 cut(s) 77, 92, 146, 196, 201, 590, 969, 1746
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 2 cut(s) 786, 840
HaeII RGCGCY 3 cut(s) 51, 201, 906
HaeIII GGCC 6 cut(s) 493, 531, 644, 784, 1042, 1107
HapII CCGG 4 cut(s) 57, 173, 192, 230
HgaI GACGC 3 cut(s) 151, 801, 2168
HhaI GCGC 5 cut(s) 50, 56, 200, 259, 905
Hin1I GRCGYC 3 cut(s) 48, 198, 812
Hin1II CATG 7 cut(s) 362, 740, 800, 841, 1038, 1054, 1950
Hin6I GCGC 5 cut(s) 48, 54, 198, 257, 903
HinP1I GCGC 5 cut(s) 48, 54, 198, 257, 903
HincII GTYRAC 2 cut(s) 1930, 2052
HindII GTYRAC 2 cut(s) 1930, 2052
HinfI GANTC 3 cut(s) 100, 344, 992
HpaII CCGG 4 cut(s) 57, 173, 192, 230
HphI GGTGA 7 cut(s) 205, 338, 419, 472, 900, 1202, 1581
Hpy166II GTNNAC 7 cut(s) 285, 572, 1173, 1930, 1995, 2052, 2139
Hpy188III TCNNGA 4 cut(s) 819, 830, 1137, 2167
Hpy8I GTNNAC 7 cut(s) 285, 572, 1173, 1930, 1995, 2052, 2139
Hpy99I CGWCG 3 cut(s) 11, 100, 167
HpyAV CCTTC 9 cut(s) 229, 260, 592, 1118, 1521, 1673, 1902, 1987, 2157
HpyCH4III ACNGT 7 cut(s) 21, 241, 730, 1542, 2031, 2092, 2105
HpyCH4IV ACGT 2 cut(s) 267, 424
HpyCH4V TGCA 7 cut(s) 628, 923, 976, 1237, 1283, 1301, 1556
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 142, 151, 254, 625, 1104, 1329, 1751
HpyF3I CTNAG 3 cut(s) 68, 1023, 2061
HpySE526I ACGT 2 cut(s) 267, 424
Hsp92I GRCGYC 3 cut(s) 48, 198, 812
Hsp92II CATG 7 cut(s) 362, 740, 800, 841, 1038, 1054, 1950
HspAI GCGC 5 cut(s) 48, 54, 198, 257, 903
KasI GGCGCC 2 cut(s) 47, 197
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Kzo9I GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
LmnI GCTCC 2 cut(s) 663, 1570
Lsp1109I GCAGC 3 cut(s) 601, 980, 1732
LweI GCATC 9 cut(s) 730, 1022, 1270, 1310, 1741, 1949, 2074, 2074, 2221
MaeII ACGT 2 cut(s) 267, 424
MaeIII GTNAC 3 cut(s) 326, 460, 2156
MalI GATC 7 cut(s) 171, 1366, 1795, 2113, 2127, 2165, 2203
MbiI CCGCTC 1 cut(s) 203
MboI GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
MfeI CAATTG 1 cut(s) 1389
MflI RGATCY 3 cut(s) 1364, 1793, 2111
MhlI GDGCHC 4 cut(s) 336, 1575, 1811, 1973
MluI ACGCGT 1 cut(s) 1906
Mly113I GGCGCC 2 cut(s) 48, 198
MlyI GAGTC 1 cut(s) 94
Mph1103I ATGCAT 3 cut(s) 978, 1285, 1303
MreI CGCCGGCG 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 2 cut(s) 502, 1510
MseI TTAA 8 cut(s) 243, 366, 1197, 1227, 1472, 1838, 2187, 2245
MslI CAYNNNNRTG 5 cut(s) 270, 339, 981, 1033, 1945
MspA1I CMGCKG 2 cut(s) 2006, 2071
MspI CCGG 4 cut(s) 57, 173, 192, 230
MspR9I CCNGG 4 cut(s) 25, 495, 778, 1044
MunI CAATTG 1 cut(s) 1389
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 4 cut(s) 25, 495, 778, 1044
MvnI CGCG 5 cut(s) 54, 257, 1068, 1908, 2162
MwoI GCNNNNNNNGC 8 cut(s) 60, 142, 151, 254, 625, 1104, 1329, 1751
NaeI GCCGGC 1 cut(s) 231
NarI GGCGCC 2 cut(s) 48, 198
NcoI CCATGG 1 cut(s) 1050
NdeI CATATG 1 cut(s) 403
NdeII GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
NgoMIV GCCGGC 1 cut(s) 229
NheI GCTAGC 1 cut(s) 1624
NlaIII CATG 7 cut(s) 362, 740, 800, 841, 1038, 1054, 1950
NlaIV GGNNCC 5 cut(s) 49, 199, 783, 1048, 2113
NmeAIII GCCGAG 2 cut(s) 157, 184
NmuCI GTSAC 3 cut(s) 326, 460, 2156
NsiI ATGCAT 3 cut(s) 978, 1285, 1303
NspI RCATGY 1 cut(s) 1038
OliI CACNNNNGTG 1 cut(s) 270
PciI ACATGT 1 cut(s) 1034
PctI GAATGC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 2 cut(s) 502, 1510
PfeI GAWTC 2 cut(s) 344, 992
PflFI GACNNNGTC 2 cut(s) 19, 677
PflMI CCANNNNNTGG 1 cut(s) 1635
PkrI GCNGC 8 cut(s) 78, 93, 147, 197, 202, 591, 970, 1747
PleI GAGTC 1 cut(s) 94
PluTI GGCGCC 2 cut(s) 51, 201
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 482
PscI ACATGT 1 cut(s) 1034
Psp124BI GAGCTC 1 cut(s) 1973
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 4 cut(s) 23, 493, 776, 1042
PspEI GGTNACC 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 4 cut(s) 23, 493, 776, 1042
PspN4I GGNNCC 5 cut(s) 49, 199, 783, 1048, 2113
PspPI GGNCC 4 cut(s) 482, 782, 1313, 1766
PspPPI RGGWCCY 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 3 cut(s) 1364, 1793, 2111
PsyI GACNNNGTC 2 cut(s) 19, 677
PvuII CAGCTG 1 cut(s) 2071
RsaI GTAC 4 cut(s) 423, 427, 1056, 1860
RsaNI GTAC 4 cut(s) 422, 426, 1055, 1859
RseI CAYNNNNRTG 5 cut(s) 270, 339, 981, 1033, 1945
SacI GAGCTC 1 cut(s) 1973
SalI GTCGAC 1 cut(s) 2050
SaqAI TTAA 8 cut(s) 243, 366, 1197, 1227, 1472, 1838, 2187, 2245
SatI GCNGC 8 cut(s) 77, 92, 146, 196, 201, 590, 969, 1746
Sau3AI GATC 7 cut(s) 169, 1364, 1793, 2111, 2125, 2163, 2201
Sau96I GGNCC 4 cut(s) 482, 782, 1313, 1766
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 4 cut(s) 25, 495, 778, 1044
SduI GDGCHC 4 cut(s) 336, 1575, 1811, 1973
SfaNI GCATC 9 cut(s) 730, 1022, 1270, 1310, 1741, 1949, 2074, 2074, 2221
SfoI GGCGCC 2 cut(s) 49, 199
SgrAI CRCCGGYG 1 cut(s) 229
SinI GGWCC 3 cut(s) 482, 1313, 1766
SmiMI CAYNNNNRTG 5 cut(s) 270, 339, 981, 1033, 1945
SmlI CTYRAG 1 cut(s) 1521
SmoI CTYRAG 1 cut(s) 1521
SnaBI TACGTA 1 cut(s) 425
SspDI GGCGCC 2 cut(s) 47, 197
SstI GAGCTC 1 cut(s) 1973
StyD4I CCNGG 4 cut(s) 23, 493, 776, 1042
StyI CCWWGG 2 cut(s) 1050, 2213
TaaI ACNGT 7 cut(s) 21, 241, 730, 1542, 2031, 2092, 2105
TaiI ACGT 2 cut(s) 270, 427
TaqI TCGA 1 cut(s) 2051
TauI GCSGC 5 cut(s) 79, 94, 148, 198, 203
TfiI GAWTC 2 cut(s) 344, 992
Tru1I TTAA 8 cut(s) 243, 366, 1197, 1227, 1472, 1838, 2187, 2245
Tru9I TTAA 8 cut(s) 243, 366, 1197, 1227, 1472, 1838, 2187, 2245
TscAI CASTG 3 cut(s) 1995, 2065, 2161
TseFI GTSAC 3 cut(s) 326, 460, 2156
TseI GCWGC 3 cut(s) 589, 968, 1745
Tsp45I GTSAC 3 cut(s) 326, 460, 2156
TspDTI ATGAA 7 cut(s) 306, 347, 753, 994, 1100, 1367, 1523
TspGWI ACGGA 1 cut(s) 2023
TspRI CASTG 3 cut(s) 1995, 2065, 2161
Tth111I GACNNNGTC 2 cut(s) 19, 677
Van91I CCANNNNNTGG 1 cut(s) 1635
VpaK11BI GGWCC 3 cut(s) 482, 1313, 1766
XagI CCTNNNNNAGG 1 cut(s) 1359
XapI RAATTY 5 cut(s) 825, 1411, 1430, 1453, 1585
XbaI TCTAGA 1 cut(s) 1136
XceI RCATGY 1 cut(s) 1038
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XmiI GTMKAC 2 cut(s) 1994, 2051
XmnI GAANNNNTTC 2 cut(s) 502, 1510
Zsp2I ATGCAT 3 cut(s) 978, 1285, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.