Rh2CG036900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011048
Physical Location & Seq
Reverse (-)
2942230 .. 2946520
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG036900.1

Sequence Viewer

Length: 1629 bp
ATGGATATTATTCAATCAAAGGCTGTTGAGCATCCTACTGTGGGGCACGAAAAGGTGAAAAAAGGCATTACTGCTGGAGGAGAAGCCAAGGGGCCTGTAAATGCCCATGCTGTTCCAAAGGCGTCATCTGGAGAAATTCAGGAAGACATGAGTAAAGCTATTTGGGGAACATCAACCCCTCTTCCCCTGTCAGCTAGGCGAAAAGAGGCTGGCGCTTCACCTATTGAAATTGCAAAAGCATATATGGGAAGCAGAATATCGGATATTGATGATGGGGCAGCAATGCATAGTAATGATATTGAATCAACACCATTCATTCCAGCATCTTCCCCTAAGCCATCAACATTTTGGCCTGGTTCCATGGTACAAAACCAACGCGATTATTCAACCCCACAGAGTGAAAGAGGCAGATTTGGCCTTCATAATTTTCCCAGAACCCCTTATTCTAGAACTATCTTTTCAAAATCCAAGTCCAAGTTTACTCCATTACAAGGTGGTGGTGATAAGTCCCAAAGAATATCATCAACTCCTTTCAAGCACTTGCAAACTCCTGTATATGGGCAGACATTTGGGAAGCCAAGAGATGATGCATTGGATGGTGGCTATGGATCATCAGTAGGACCAATTCGCAGGACACGCCATAAAGTTGCTACACAAACTCCTCCTAGAGGATCTCCTTATGTTCATTCATCTTCCATTGGAACTCCACAGGTGGAAAATTCCCACATCCGCAAAGAATTTTTGCCTGCTGGCAGGAAGAATTTTGAACTTGGAGGATTAAGTGGCAACTCCCCGTTCCAGTCAATAGATAGAAAGCCTTCCAGCTCTCAAGTTGGTGTTCATCCACAGTCTAGTCAGATTGCAAGGACAATTTTGGAGCACATCAATAGAAATTCACCCACTCCTAAAGATAAGTCAGAAGAGTTGAAGCTAGCCATTGCGTGGAAGAAACCCCCGACTTCTGATATTCCTTCACTCAACCAGAATGGAGATGATATCTCACTTCTAGGAGGGTCTAGTTCCCGTAAAGTCATAATTAATGATAACCAGAAAAAGCCTGCTCTTGAGAACGCTGACAAGTGGAACTCTCTGTTTAAGGTTCCACCTCCAAAGCCTAGTGTAAAAGCTGCTGATGTTGTAAGCAATGGTCCTGCTGGTGGTGGGAGTGGTGGAAGATCTCTAGCCAAGGGCACAGAGGAGGCTTTTCCACAGATTACTTTAAATGTTGTTGGTTCGGAGGTACTAAATCAACAGAAGAAGCCTCTCTTTCAACCTTCAGGGACTAAACGCGTTTTTCCTGCTATATCTGTTGACAAGCCCGCCCCCACATGGAAGTTTTCTTCTGATAAGAGCTCTACCTTCACGTTCCCAGTGTCTACATCTTCCGCTGTGTTTTCTGAACCACCCACACCGTCCGTTATGCCATCTGTGTCGACTAGCACTGAGCATCAGCTGAAAGATGGAGATGCTGCTGTTCCTACATACAGTTTCGGATCCAAGAAGTCTGAGCGCCTTGTGTTTACATTCCCTTCTACCAGTGATGCGATCCAGATTGGTAATTCAGATATTAAGTTCAGCTTTGGATCAGATAAGCCAAGGTTGTCATTCAAAGATGCTGTCTGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

542

Amino Acids

58.17

Weight (kDa)

9.73

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20200
fragaria_vesca FvH4_1g03050 FvH4_1g03050
malus_domestica MD02G1029800.v1.1 MD15G1171200.v1.1
prunus_persica Prupe.7G245100_v2.0.a1 Prupe.7G245100_v2.0.a1
pyrus_communis pycom02g02480 pycom15g15280
rosa_chinensis RchiOBHm_Chr2g0088181
rosa_laevigata RLG00000015929
rosa_multiflora Rmu_sc0003275.1_g000068
rosa_roxburghii Rroxscaffold_2G00152850
rosa_rugosa Rorug01G0481400 Rorug01G0481500
rosa_samantha Rh2AG036600 Rh2BG035800 Rh2CG036900 Rh2DG036300
rosa_wichuraiana Rw2G002880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 942
AccI GTMKAC 2 cut(s) 1376, 1433
AccII CGCG 2 cut(s) 378, 1290
AciI CCGC 3 cut(s) 730, 1320, 1386
AclWI GGATC 6 cut(s) 616, 679, 1488, 1501, 1540, 1591
AcsI RAATTY 5 cut(s) 135, 718, 737, 760, 892
AcuI CTGAAG 1 cut(s) 1260
AcyI GRCGYC 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 2 cut(s) 366, 1242
AfiI CCNNNNNNNGG 7 cut(s) 41, 491, 557, 668, 942, 1157, 1329
AflIII ACRYGT 1 cut(s) 1288
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 8 cut(s) 158, 194, 825, 931, 1127, 1353, 1453, 1578
AluI AGCT 8 cut(s) 158, 194, 825, 931, 1127, 1353, 1453, 1578
Alw21I GWGCWC 2 cut(s) 882, 1355
AlwI GGATC 6 cut(s) 616, 679, 1488, 1501, 1540, 1591
AoxI GGCC 3 cut(s) 92, 350, 415
ApeKI GCWGC 3 cut(s) 278, 1127, 1469
ApoI RAATTY 5 cut(s) 135, 718, 737, 760, 892
ArsI GACNNNNNNTTYG 3 cut(s) 455, 487, 1602
AseI ATTAAT 1 cut(s) 1038
Asp700I GAANNNNTTC 1 cut(s) 817
AspLEI GCGC 2 cut(s) 215, 1512
AspS9I GGNCC 3 cut(s) 92, 620, 1148
AsuHPI GGTGA 4 cut(s) 67, 210, 512, 888
AsuNHI GCTAGC 1 cut(s) 931
AvaII GGWCC 2 cut(s) 620, 1148
BaeGI GKGCMC 2 cut(s) 48, 1193
BamHI GGATCC 1 cut(s) 1493
BanII GRGCYC 1 cut(s) 1355
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 882, 1355
BbvI GCAGC 3 cut(s) 290, 1114, 1456
BccI CCATC 5 cut(s) 266, 346, 590, 1432, 1454
BciT130I CCWGG 1 cut(s) 354
BfoI RGCGCY 2 cut(s) 216, 1513
BglII AGATCT 1 cut(s) 1175
BisI GCNGC 3 cut(s) 279, 1128, 1470
BlsI GCNGC 3 cut(s) 280, 1129, 1471
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 620, 1148
BmgT120I GGNCC 3 cut(s) 92, 620, 1148
BmiI GGNNCC 4 cut(s) 93, 358, 1101, 1495
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 1364
BmsI GCATC 7 cut(s) 40, 332, 577, 1456, 1456, 1531, 1603
BmtI GCTAGC 1 cut(s) 935
BmuI ACTGGG 1 cut(s) 1364
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 2 cut(s) 96, 150
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 813, 1085
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 87, 360, 1185, 1595
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 7 cut(s) 41, 491, 557, 668, 942, 1157, 1329
Bse1I ACTGG 3 cut(s) 799, 1370, 1536
Bse3DI GCAATG 3 cut(s) 288, 936, 1150
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 87, 360, 1185, 1595
BseGI GGATG 4 cut(s) 31, 601, 726, 841
BseLI CCNNNNNNNGG 7 cut(s) 41, 491, 557, 668, 942, 1157, 1329
BseMI GCAATG 3 cut(s) 288, 936, 1150
BseMII CTCAG 2 cut(s) 1434, 1497
BseNI ACTGG 3 cut(s) 799, 1370, 1536
BseRI GAGGAG 3 cut(s) 93, 651, 1211
BseSI GKGCMC 2 cut(s) 48, 1193
BseXI GCAGC 3 cut(s) 290, 1114, 1456
Bsh1236I CGCG 2 cut(s) 378, 1290
BshFI GGCC 3 cut(s) 94, 352, 417
BsiHKAI GWGCWC 2 cut(s) 882, 1355
BslFI GGGAC 2 cut(s) 493, 1294
BslI CCNNNNNNNGG 7 cut(s) 41, 491, 557, 668, 942, 1157, 1329
BsmFI GGGAC 2 cut(s) 493, 1294
BsnI GGCC 3 cut(s) 94, 352, 417
Bsp1286I GDGCHC 4 cut(s) 48, 882, 1193, 1355
Bsp143I GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 730, 1320, 1386
BspANI GGCC 3 cut(s) 94, 352, 417
BspCNI CTCAG 2 cut(s) 1435, 1498
BspFNI CGCG 2 cut(s) 378, 1290
BspLI GGNNCC 4 cut(s) 93, 358, 1101, 1495
BspOI GCTAGC 1 cut(s) 935
BspPI GGATC 6 cut(s) 616, 679, 1488, 1501, 1540, 1591
BsrDI GCAATG 3 cut(s) 288, 936, 1150
BsrI ACTGG 3 cut(s) 799, 1370, 1536
BssECI CCNNGG 4 cut(s) 87, 360, 1185, 1595
BssMI GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 4 cut(s) 87, 360, 1185, 1595
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 40, 849, 1413, 1487
Bst6I CTCTTC 2 cut(s) 186, 915
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 6 cut(s) 211, 747, 751, 933, 1059, 1320
BstDEI CTNAG 3 cut(s) 333, 1443, 1506
BstDSI CCRYGG 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 4 cut(s) 31, 601, 726, 841
BstFNI CGCG 2 cut(s) 378, 1290
BstH2I RGCGCY 2 cut(s) 216, 1513
BstHHI GCGC 2 cut(s) 215, 1512
BstKTI GATC 6 cut(s) 611, 674, 1178, 1496, 1548, 1586
BstMBI GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
BstMWI GCNNNNNNNGC 2 cut(s) 414, 636
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 48, 1193
BstUI CGCG 2 cut(s) 378, 1290
BstV1I GCAGC 3 cut(s) 290, 1114, 1456
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 3 cut(s) 671, 1175, 1493
BstYI RGATCY 3 cut(s) 671, 1175, 1493
BsuRI GGCC 3 cut(s) 94, 352, 417
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 4 cut(s) 31, 601, 726, 841
BtsIMutI CAGTG 3 cut(s) 1377, 1440, 1543
Cac8I GCNNGC 6 cut(s) 211, 747, 751, 933, 1059, 1320
CfoI GCGC 2 cut(s) 215, 1512
Cfr13I GGNCC 3 cut(s) 92, 620, 1148
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 365, 1241
CviAII CATG 4 cut(s) 107, 148, 361, 1329
CviQI GTAC 2 cut(s) 365, 1241
DdeI CTNAG 3 cut(s) 333, 1443, 1506
DpnI GATC 6 cut(s) 610, 673, 1177, 1495, 1547, 1585
DpnII GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
DraI TTTAAA 1 cut(s) 1221
DraIII CACNNNGTG 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 186, 915
EarI CTCTTC 2 cut(s) 186, 915
Ecl136II GAGCTC 1 cut(s) 1353
Eco130I CCWWGG 4 cut(s) 87, 360, 1185, 1595
Eco24I GRGCYC 1 cut(s) 1355
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 2 cut(s) 620, 1148
Eco53kI GAGCTC 1 cut(s) 1353
Eco57I CTGAAG 1 cut(s) 1260
EcoICRI GAGCTC 1 cut(s) 1353
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 4 cut(s) 87, 360, 1185, 1595
EcoT22I ATGCAT 2 cut(s) 288, 592
EcoT38I GRGCYC 1 cut(s) 1355
ErhI CCWWGG 4 cut(s) 87, 360, 1185, 1595
FaeI CATG 4 cut(s) 110, 151, 364, 1332
FalI AAGNNNNNCTT 4 cut(s) 1250, 1282, 1562, 1594
FaqI GGGAC 2 cut(s) 493, 1294
FatI CATG 4 cut(s) 106, 147, 360, 1328
FauI CCCGC 1 cut(s) 1327
FblI GTMKAC 2 cut(s) 1376, 1433
Fnu4HI GCNGC 3 cut(s) 279, 1128, 1470
FokI GGATG 4 cut(s) 18, 608, 713, 828
FriOI GRGCYC 1 cut(s) 1355
Fsp4HI GCNGC 3 cut(s) 279, 1128, 1470
GlaI GCGC 2 cut(s) 214, 1511
GluI GCNGC 3 cut(s) 279, 1128, 1470
GsuI CTGGAG 2 cut(s) 96, 150
HaeII RGCGCY 2 cut(s) 216, 1513
HaeIII GGCC 3 cut(s) 94, 352, 417
HgaI GACGC 1 cut(s) 111
HhaI GCGC 2 cut(s) 215, 1512
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 4 cut(s) 110, 151, 364, 1332
Hin6I GCGC 2 cut(s) 213, 1510
HinP1I GCGC 2 cut(s) 213, 1510
HincII GTYRAC 2 cut(s) 1312, 1434
HindII GTYRAC 2 cut(s) 1312, 1434
HinfI GANTC 1 cut(s) 302
HphI GGTGA 4 cut(s) 67, 210, 512, 888
Hpy166II GTNNAC 5 cut(s) 480, 1312, 1377, 1434, 1521
Hpy188III TCNNGA 5 cut(s) 129, 140, 447, 1064, 1549
Hpy8I GTNNAC 5 cut(s) 480, 1312, 1377, 1434, 1521
HpyAV CCTTC 6 cut(s) 428, 828, 981, 1284, 1369, 1539
HpyCH4III ACNGT 4 cut(s) 40, 849, 1413, 1487
HpyCH4IV ACGT 1 cut(s) 1364
HpyCH4V TGCA 5 cut(s) 233, 286, 544, 590, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 636
HpyF3I CTNAG 3 cut(s) 333, 1443, 1506
HpySE526I ACGT 1 cut(s) 1364
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 4 cut(s) 110, 151, 364, 1332
HspAI GCGC 2 cut(s) 213, 1510
Kzo9I GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 3 cut(s) 290, 1114, 1456
LweI GCATC 7 cut(s) 40, 332, 577, 1456, 1456, 1531, 1603
MaeII ACGT 1 cut(s) 1364
MalI GATC 6 cut(s) 610, 673, 1177, 1495, 1547, 1585
MboI GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
MflI RGATCY 3 cut(s) 671, 1175, 1493
MhlI GDGCHC 4 cut(s) 48, 882, 1193, 1355
MluI ACGCGT 1 cut(s) 1288
Mph1103I ATGCAT 2 cut(s) 288, 592
MroXI GAANNNNTTC 1 cut(s) 817
MseI TTAA 6 cut(s) 779, 1038, 1095, 1220, 1569, 1627
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 1388, 1453
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 2 cut(s) 378, 1290
MwoI GCNNNNNNNGC 2 cut(s) 414, 636
NcoI CCATGG 1 cut(s) 360
NdeII GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
NheI GCTAGC 1 cut(s) 931
NlaIII CATG 4 cut(s) 110, 151, 364, 1332
NlaIV GGNNCC 4 cut(s) 93, 358, 1101, 1495
NsiI ATGCAT 2 cut(s) 288, 592
PdmI GAANNNNTTC 1 cut(s) 817
PfeI GAWTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 942
PkrI GCNGC 3 cut(s) 280, 1129, 1471
PshBI ATTAAT 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 1355
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 93, 358, 1101, 1495
PspPI GGNCC 3 cut(s) 92, 620, 1148
PsuI RGATCY 3 cut(s) 671, 1175, 1493
PvuII CAGCTG 1 cut(s) 1453
RsaI GTAC 2 cut(s) 366, 1242
RsaNI GTAC 2 cut(s) 365, 1241
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 1355
SalI GTCGAC 1 cut(s) 1432
SaqAI TTAA 6 cut(s) 779, 1038, 1095, 1220, 1569, 1627
SatI GCNGC 3 cut(s) 279, 1128, 1470
Sau3AI GATC 6 cut(s) 608, 671, 1175, 1493, 1545, 1583
Sau96I GGNCC 3 cut(s) 92, 620, 1148
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 4 cut(s) 48, 882, 1193, 1355
SfaNI GCATC 7 cut(s) 40, 332, 577, 1456, 1456, 1531, 1603
SinI GGWCC 2 cut(s) 620, 1148
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 828, 1064
SmoI CTYRAG 2 cut(s) 828, 1064
SsiI CCGC 3 cut(s) 730, 1320, 1386
SstI GAGCTC 1 cut(s) 1355
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 4 cut(s) 87, 360, 1185, 1595
TaaI ACNGT 4 cut(s) 40, 849, 1413, 1487
TaiI ACGT 1 cut(s) 1367
TaqI TCGA 1 cut(s) 1433
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 6 cut(s) 779, 1038, 1095, 1220, 1569, 1627
Tru9I TTAA 6 cut(s) 779, 1038, 1095, 1220, 1569, 1627
TscAI CASTG 3 cut(s) 1377, 1447, 1543
TseI GCWGC 3 cut(s) 278, 1127, 1469
TspDTI ATGAA 5 cut(s) 304, 410, 674, 678, 830
TspGWI ACGGA 1 cut(s) 1405
TspRI CASTG 3 cut(s) 1377, 1447, 1543
Van91I CCANNNNNTGG 1 cut(s) 942
VpaK11BI GGWCC 2 cut(s) 620, 1148
VspI ATTAAT 1 cut(s) 1038
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 5 cut(s) 135, 718, 737, 760, 892
XbaI TCTAGA 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XmiI GTMKAC 2 cut(s) 1376, 1433
XmnI GAANNNNTTC 1 cut(s) 817
Zsp2I ATGCAT 2 cut(s) 288, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.