Rorug01G0481500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011048
Physical Location & Seq
Reverse (-)
56925597 .. 56927847
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0481500.1

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAATAATGTTATCCCCGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCAGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCAAAGGCTGTCAAAATCTTTCCTAGGCCTACTGCTGGACCTCTCCGTCCAGTTGTTCGTGGACAGACATTGAAGTATAACATGAAGGTCAGGGCTGGTCGTGGCTTCACTCTGGAAGAGTTGAAGGCTGCTGGAATTCCAAGGAAACTTGCACCAACCATCGGTATCTCGGTTGATCATCGCAGGAAGAACCGTTCTCTTGAGGGGTTTCAAACTAATGTGCTTCGCTTGAAGACATACAAGCAGAAGTTGGTTGTCTTCCCAAGGCGCGCTGGCAAGTTCAAGGCTGGTGATTCTGCAGCAGAGGAGCTAGCAAATGCAACCCAGCTCCAAGGTCCTCTCTTGGCAATTCAACAGGAGAAACCAGTCACTGAGCTCGTGAAGGTCACTGCAGATATGAAGAAAGTCAATGCATATGACAAGCTCCGTATTGAGCGGGTCAATGTCCGTCATGTTGGGGCCAGGGCAAAGAAGGCTGCTGAGGCTGAGAAGGAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.63

Weight (kDa)

11.07

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 1.5e-77 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20200
fragaria_vesca FvH4_1g03050 FvH4_1g03050
malus_domestica MD02G1029800.v1.1 MD15G1171200.v1.1
prunus_persica Prupe.7G245100_v2.0.a1 Prupe.7G245100_v2.0.a1
pyrus_communis pycom02g02480 pycom15g15280
rosa_chinensis RchiOBHm_Chr2g0088181
rosa_laevigata RLG00000015929
rosa_multiflora Rmu_sc0003275.1_g000068
rosa_roxburghii Rroxscaffold_2G00152850
rosa_rugosa Rorug01G0481400 Rorug01G0481500
rosa_samantha Rh2AG036600 Rh2BG035800 Rh2CG036900 Rh2DG036300
rosa_wichuraiana Rw2G002880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 553
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 3 cut(s) 121, 152, 278
AgsI TTSAA 6 cut(s) 190, 241, 329, 349, 400, 470
AjnI CCWGG 4 cut(s) 68, 95, 114, 578
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 427, 445, 493, 541
AluI AGCT 4 cut(s) 427, 445, 493, 541
Alw21I GWGCWC 2 cut(s) 36, 495
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 143, 576
ApeKI GCWGC 3 cut(s) 245, 416, 593
ApoI RAATTY 1 cut(s) 252
AspA2I CCTAGG 1 cut(s) 140
AspLEI GCGC 2 cut(s) 387, 389
AspS9I GGNCC 3 cut(s) 155, 452, 576
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 2 cut(s) 16, 419
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 155, 452
AvrII CCTAGG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 495
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 3 cut(s) 98, 356, 367
Bbv12I GWGCWC 2 cut(s) 36, 495
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 232, 428, 580
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 4 cut(s) 70, 97, 116, 580
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 27, 28
BfaI CTAG 2 cut(s) 141, 428
BfmI CTRYAG 2 cut(s) 414, 507
BisI GCNGC 3 cut(s) 246, 417, 594
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 3 cut(s) 247, 418, 595
Bme1390I CCNGG 6 cut(s) 27, 28, 70, 97, 116, 580
Bme18I GGWCC 2 cut(s) 155, 452
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 155, 452, 576
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 6 cut(s) 27, 28, 70, 97, 116, 580
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 98, 356, 367
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 8 cut(s) 25, 26, 27, 140, 257, 380, 448, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 152, 278
Bse1I ACTGG 3 cut(s) 53, 167, 482
BseBI CCWGG 4 cut(s) 70, 97, 116, 580
BseDI CCNNGG 8 cut(s) 25, 26, 27, 140, 257, 380, 448, 579
BseLI CCNNNNNNNGG 3 cut(s) 121, 152, 278
BseMII CTCAG 3 cut(s) 480, 588, 594
BseNI ACTGG 3 cut(s) 53, 167, 482
BsePI GCGCGC 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 115, 437
BseXI GCAGC 3 cut(s) 232, 428, 580
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 145, 578
BsiHKAI GWGCWC 2 cut(s) 36, 495
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 121, 152, 278
BsnI GGCC 2 cut(s) 145, 578
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 36, 495
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 553
BspANI GGCC 2 cut(s) 145, 578
BspCNI CTCAG 3 cut(s) 481, 589, 595
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 2 cut(s) 418, 511
BspOI GCTAGC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 553
BsrI ACTGG 3 cut(s) 53, 167, 482
BssECI CCNNGG 8 cut(s) 25, 26, 27, 140, 257, 380, 448, 579
BssHII GCGCGC 1 cut(s) 385
BssMI GATC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 4 cut(s) 140, 257, 380, 448
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 4 cut(s) 70, 97, 116, 580
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 112, 387, 391, 429
BstDEI CTNAG 3 cut(s) 489, 597, 603
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 387, 389
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 116, 590, 599
BstNI CCWGG 4 cut(s) 70, 97, 116, 580
BstSCI CCNGG 6 cut(s) 25, 26, 68, 95, 114, 578
BstSFI CTRYAG 2 cut(s) 414, 507
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 232, 428, 580
BstV2I GAAGAC 3 cut(s) 98, 356, 367
BsuRI GGCC 2 cut(s) 145, 578
BtgZI GCGATG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 46, 486, 504
Cac8I GCNNGC 4 cut(s) 112, 387, 391, 429
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 387, 389
Cfr13I GGNCC 3 cut(s) 155, 452, 576
Cfr9I CCCGGG 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 199, 569
DdeI CTNAG 3 cut(s) 489, 597, 603
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 4 cut(s) 140, 257, 380, 448
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 155, 452
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 4 cut(s) 68, 95, 114, 578
EcoT14I CCWWGG 4 cut(s) 140, 257, 380, 448
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 4 cut(s) 140, 257, 380, 448
FaeI CATG 2 cut(s) 202, 572
FaiI YATR 8 cut(s) 60, 195, 200, 355, 515, 532, 534, 570
FatI CATG 2 cut(s) 198, 568
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 246, 417, 594
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 246, 417, 594
FspBI CTAG 2 cut(s) 141, 428
GlaI GCGC 2 cut(s) 386, 388
GluI GCNGC 3 cut(s) 246, 417, 594
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 2 cut(s) 145, 578
HapII CCGG 1 cut(s) 27
HhaI GCGC 2 cut(s) 387, 389
Hin1II CATG 2 cut(s) 202, 572
Hin6I GCGC 2 cut(s) 385, 387
HinP1I GCGC 2 cut(s) 385, 387
HinfI GANTC 1 cut(s) 410
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 16, 419
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 5 cut(s) 40, 64, 230, 317, 496
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 196, 235, 493, 583, 601
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 5 cut(s) 269, 416, 437, 509, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 590, 599
HpyF3I CTNAG 3 cut(s) 489, 597, 603
Hsp92II CATG 2 cut(s) 202, 572
HspAI GCGC 2 cut(s) 385, 387
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 4 cut(s) 31, 424, 450, 546
Lsp1109I GCAGC 3 cut(s) 232, 428, 580
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 2 cut(s) 141, 428
MaeIII GTNAC 2 cut(s) 484, 502
MalI GATC 1 cut(s) 294
MbiI CCGCTC 1 cut(s) 553
MboI GATC 1 cut(s) 292
MboII GAAGA 7 cut(s) 103, 245, 316, 361, 367, 529, 623
MhlI GDGCHC 2 cut(s) 36, 495
MluCI AATT 2 cut(s) 252, 465
MnlI CCTC 6 cut(s) 93, 168, 313, 415, 465, 592
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 6 cut(s) 27, 28, 70, 97, 116, 580
MvaI CCWGG 4 cut(s) 70, 97, 116, 580
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 116, 590, 599
NciI CCSGG 2 cut(s) 27, 28
NdeI CATATG 1 cut(s) 532
NdeII GATC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 202, 572
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 2 cut(s) 484, 502
NsiI ATGCAT 1 cut(s) 532
PauI GCGCGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 247, 418, 595
PpuMI RGGWCCY 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 4 cut(s) 68, 95, 114, 578
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 4 cut(s) 68, 95, 114, 578
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 3 cut(s) 155, 452, 576
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 418, 511
PstNI CAGNNNCTG 1 cut(s) 488
PteI GCGCGC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 246, 417, 594
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 3 cut(s) 155, 452, 576
ScrFI CCNGG 6 cut(s) 27, 28, 70, 97, 116, 580
SduI GDGCHC 2 cut(s) 36, 495
SetI ASST 9 cut(s) 71, 160, 207, 429, 447, 454, 495, 504, 543
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 414, 507
SinI GGWCC 2 cut(s) 155, 452
SmaI CCCGGG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 252, 465
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 1 cut(s) 553
SspMI CTAG 2 cut(s) 141, 428
SstI GAGCTC 1 cut(s) 495
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 6 cut(s) 25, 26, 68, 95, 114, 578
StyI CCWWGG 4 cut(s) 140, 257, 380, 448
TaaI ACNGT 1 cut(s) 311
TasI AATT 2 cut(s) 252, 465
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 53, 493, 511
TseFI GTSAC 2 cut(s) 484, 502
TseI GCWGC 3 cut(s) 245, 416, 593
Tsp45I GTSAC 2 cut(s) 484, 502
TspDTI ATGAA 2 cut(s) 215, 530
TspGWI ACGGA 3 cut(s) 152, 533, 554
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 3 cut(s) 53, 493, 511
VpaK11BI GGWCC 2 cut(s) 155, 452
XapI RAATTY 1 cut(s) 252
XmaI CCCGGG 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 140
XspI CTAG 2 cut(s) 141, 428
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.