Rroxscaffold_3G00268130

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003275
Physical Location & Seq
Forward (+)
61285162 .. 61289585
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268130.1

Sequence Viewer

Length: 2148 bp
ATGGGGAGTTACAGTGAAGAGTGTGAGGATCAATTTTATGATACCAGGGAGGACCTATCTTCTGTGTCAGATTGGGGTGCAGATTGCTGTGAGGACTGTAGTCCTATTGCTTCGGTTTTTTCAAGGTATGAGTGTTGGGGTAAGAATCCGGAAAGTGTTCATGAGCGCCGCCATAGGTTCCTCAAATGGATGGGTTTGGATTTAGATCGGAATTTGAGTATGACAGAAGAATCAGATGATGGCTTCTTTATTGACAGAAGTGAAATGGGTATTGATAGAATGAAAGAAGACAGTGGGGTGGTGTTGAGAACTTCAGGATTTGAAGAGGGGTGTTGCTCAAATCAGTGTACAGTGTCTTCTTCATCAAGTGAAGTTCGAGCATCACTAGGAAATGCTTTGGATGAGAATTTTGAATTTCCAACAAGGAAATTGAATGATCGAAGGGACTTTGTTGTGGATGAATTGGGTGAGAATTGCATACTCAGCAGATTCCGTGAGTTGAGACTAAATCAGTTGGTCAGTTCTGGGGAGATTCATTCCAACCGTGCACCAGCACCATCTCCTTCGATTCAGCAATTATTGCAGAGAGAAGTTGAAAACGCTAGGTACTTGCTTGATGCGAAAAAGAAGACTAAAAGAGGATGGTTAAAGAAGTTACGCAGTGGGATGTGTGTTGCTGATAAACCTGAGGCTGCACTGAGCCCCATCAGTCTTAAATCTGCAACACGGACAGGGATGCAAAGAGTCCGGGTTCAATCAAGTAAAAAGCGGAGCAAGGAACTGTCTTCTCTTTATGGTGGGCAAAATTTTTCGGCTCATAAGGGGTCAATTTTGTCGATGAAATTCAGTCTTGATGGGCAACACCTGGCAACTGCTGGTCAAGATGGCATCGTCCGTGTATGGAAGGTGATTGAGGATGAGAGAGTAGACAAATTTGATATTGCGAATGATCCTTCTTCTCTATACTTCAAAATGAATCCATTTTCTAAGTTAGGCTCTCAGGTTGTGGACAAAGAGAAACAAAGTAATGCAAAGAAATTGGGTGGATCATCAGACTCAGCTTGTGTGATTTTCCCTCCAAAGATTTTCCGTTTAATGGAGAAGCCTCTGCACGAATTCCAGGGACACAGTGGTGATGTCTTGGATCTCTCATGGTCAAAGAATGGGTTCCTGCTCTCATCCTCTGTTGATAAGACAGTTCGACTATGGCAAGTGGGATGTGACAGATGCCTGAGAGTTTTCTCTCATAATAATTATGTGACATGTGTTGATTTCAACCCTCTGGATGATAATTATTTCATCAGTGGTTCAATTGACGGAAAAGTTCGCATCTGGGAAATTATTCGTTGCCTGGTTGTGGATTATATTGATGTTCGTGAGATAGTCACTGCTGTATCTTATTGTCCTGATGGAAAGGGAGGAATTGTGGGCTTTGTCACTGGAAATTGCTGCTTTTATAATATAATAGTTCGTGACACGGTTTCTATGCTTTCAGATAATCACCTGAAATTGGATGCTGAGATATGCATACAGGGCAAAAAGAAGTCAGCGGGAAAGAGGATTACTGGCTTGCAGTTTTCTCCAAGCAACCCAAGCAAGGTTATGGTCACCTCTGCCGATTCAGTAGTACGTGTCATTTCTGGGTCTAAGGTCATCTGCAAATTTAAGGGTCTGCGAAGTGGAGGAAGCCATGTTTCTGCATCTTTTACCTCAGATGGAAACCACATTGTTTCGGCGAGTGAGGATTCAAGTGTTCACATCTGGAACTACAATAGCCAGGACACGTCCTCTTCACGATCAAAGAACATAAGGTCTTGTGAGAGTTTCGTGTCCCACAACTCGATGATCGCGATACCTTGGAATGGTGTGAACGATCTCCCAGGAACACTTCCATCCCCTACATTCATTGGGGATGCTCAGGGGAGAAGTAGCCTTGATAGTCCGCTGAAGCTTCACAATTTCGATGAGAGAGCACAACAGAAAATGCATCTCTCTTCACCTGATTGCTTCTCTCTGGGTCGTGGGTTTTTGTTGGAGTCATTGCCAAAGGGAACTCCAACTTGGCCTGAAGAGAAACTCGTAAACTCAAGTCCCGGCCCCCGGTGCCTGTTTCCCCAACAATGTCTAGATCAGAGTACAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

715

Amino Acids

79.51

Weight (kDa)

6.93

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 268 - 309 6.2e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 268 - 446 3.2e-12 WDR3 second beta-propeller domain
WD40 PF00400 269 - 301 3.5e-07 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 269 - 319 5.7e-06 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 269 - 323 4e-07 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 332 - 499 1.9e-13 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 349 - 596 4.2e-22 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 361 - 598 9e-30 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 365 - 447 1.9e-12 WDR3 first beta-propeller domain
WD40 PF00400 368 - 403 1.9e-08 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 369 - 544 8.6e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 369 - 430 3.7e-07 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 371 - 500 3.6e-07 G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1 PF24105 373 - 449 8e-11 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 373 - 593 1.3e-07 EIF3I
Beta-prop_WDR3_2nd PF25172 379 - 593 9.1e-12 WDR3 second beta-propeller domain
WD40 PF00400 409 - 445 6.9e-07 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 424 - 623 4.3e-12 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 522 - 621 8.6e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1458
AccB1I GGYRCC 1 cut(s) 2103
AccI GTMKAC 1 cut(s) 927
AccII CGCG 1 cut(s) 1850
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 4 cut(s) 169, 769, 1550, 1943
AclWI GGATC 4 cut(s) 36, 944, 1054, 1152
AcsI RAATTY 8 cut(s) 211, 406, 413, 805, 842, 932, 1115, 1661
AcuI CTGAAG 3 cut(s) 297, 1967, 2088
AfaI GTAC 4 cut(s) 349, 608, 1629, 2137
AfiI CCNNNNNNNGG 6 cut(s) 1096, 1357, 1510, 1597, 1862, 2100
AflIII ACRYGT 3 cut(s) 1262, 1630, 1782
AjiI CACGTC 1 cut(s) 1785
AjnI CCWGG 6 cut(s) 44, 864, 1119, 1350, 1776, 1879
AjuI GAANNNNNNNTTGG 2 cut(s) 2044, 2076
AleI CACNNNNGTG 1 cut(s) 1131
AluBI AGCT 2 cut(s) 1061, 1951
AluI AGCT 2 cut(s) 1061, 1951
Alw21I GWGCWC 2 cut(s) 550, 1975
Alw26I GTCTC 1 cut(s) 496
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 4 cut(s) 36, 944, 1054, 1152
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 2 cut(s) 2063, 2095
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 692, 1449
ApoI RAATTY 8 cut(s) 211, 406, 413, 805, 842, 932, 1115, 1661
Asp700I GAANNNNTTC 3 cut(s) 156, 1166, 1341
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 52, 2096
AsuC2I CCSGG 3 cut(s) 749, 2094, 2101
AsuHPI GGTGA 6 cut(s) 479, 919, 1145, 1493, 1600, 1989
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 550
BaeI ACNNNNGTAYC 2 cut(s) 1377, 1410
BanI GGYRCC 1 cut(s) 2103
BanII GRGCYC 1 cut(s) 704
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BbsI GAAGAC 4 cut(s) 294, 348, 635, 777
Bbv12I GWGCWC 2 cut(s) 550, 1975
BbvI GCAGC 2 cut(s) 679, 1436
BciT130I CCWGG 6 cut(s) 46, 866, 1121, 1352, 1778, 1881
BcnI CCSGG 3 cut(s) 749, 2094, 2101
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 3 cut(s) 386, 603, 2126
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 3 cut(s) 169, 693, 1450
BlsI GCNGC 3 cut(s) 170, 694, 1451
Bme1390I CCNGG 9 cut(s) 46, 749, 866, 1121, 1352, 1778, 1881, 2094, 2101
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 1785
BmgT120I GGNCC 2 cut(s) 52, 2096
BmiI GGNNCC 4 cut(s) 179, 1169, 2098, 2105
BmrFI CCNGG 9 cut(s) 46, 749, 866, 1121, 1352, 1778, 1881, 2094, 2101
BoxI GACNNNNGTC 1 cut(s) 99
BpiI GAAGAC 4 cut(s) 294, 348, 635, 777
Bpu10I CCTNAGC 1 cut(s) 1917
BpuEI CTTGAG 1 cut(s) 2071
BpuMI CCSGG 3 cut(s) 749, 2094, 2101
BsaAI YACGTR 1 cut(s) 1631
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 5 cut(s) 45, 1120, 1856, 1879, 2099
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 3 cut(s) 28, 1410, 1440
Bsc4I CCNNNNNNNGG 6 cut(s) 1096, 1357, 1510, 1597, 1862, 2100
Bse1I ACTGG 2 cut(s) 1444, 1570
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 2039
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 6 cut(s) 46, 866, 1121, 1352, 1778, 1881
BseDI CCNNGG 5 cut(s) 45, 1120, 1856, 1879, 2099
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 6 cut(s) 1096, 1357, 1510, 1597, 1862, 2100
BseMI GCAATG 1 cut(s) 2039
BseMII CTCAG 9 cut(s) 496, 678, 689, 1013, 1071, 1223, 1509, 1725, 1931
BseNI ACTGG 2 cut(s) 1444, 1570
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 2 cut(s) 679, 1436
BsgI GTGCAG 3 cut(s) 99, 678, 1094
Bsh1236I CGCG 1 cut(s) 1850
BshFI GGCC 2 cut(s) 2065, 2097
BshNI GGYRCC 1 cut(s) 2103
BsiHKAI GWGCWC 2 cut(s) 550, 1975
BsiSI CCGG 4 cut(s) 149, 748, 2094, 2101
BslFI GGGAC 4 cut(s) 458, 1137, 1816, 2076
BslI CCNNNNNNNGG 6 cut(s) 1096, 1357, 1510, 1597, 1862, 2100
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 4 cut(s) 458, 1137, 1816, 2076
BsnI GGCC 2 cut(s) 2065, 2097
Bsp1286I GDGCHC 3 cut(s) 550, 704, 1975
Bsp13I TCCGGA 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 347
Bsp68I TCGCGA 1 cut(s) 1850
BspACI CCGC 4 cut(s) 169, 769, 1550, 1943
BspANI GGCC 2 cut(s) 2065, 2097
BspCNI CTCAG 9 cut(s) 495, 679, 690, 1012, 1070, 1224, 1510, 1724, 1930
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 1 cut(s) 1850
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 4 cut(s) 179, 1169, 2098, 2105
BspPI GGATC 4 cut(s) 36, 944, 1054, 1152
BspT107I GGYRCC 1 cut(s) 2103
BsrDI GCAATG 1 cut(s) 2039
BsrGI TGTACA 1 cut(s) 347
BsrI ACTGG 2 cut(s) 1444, 1570
BssECI CCNNGG 5 cut(s) 45, 1120, 1856, 1879, 2099
BssT1I CCWWGG 1 cut(s) 1856
Bst2UI CCWGG 6 cut(s) 46, 866, 1121, 1352, 1778, 1881
Bst4CI ACNGT 9 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198, 1480
Bst6I CTCTTC 5 cut(s) 12, 318, 1795, 1999, 2064
BstAPI GCANNNNNTGC 1 cut(s) 580
BstAUI TGTACA 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 1631
BstC8I GCNNGC 1 cut(s) 1571
BstEII GGTNACC 1 cut(s) 1606
BstFNI CGCG 1 cut(s) 1850
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 496
BstMWI GCNNNNNNNGC 5 cut(s) 483, 580, 1533, 1593, 2103
BstNI CCWGG 6 cut(s) 46, 866, 1121, 1352, 1778, 1881
BstNSI RCATGY 1 cut(s) 1266
BstPAI GACNNNNGTC 1 cut(s) 99
BstPI GGTNACC 1 cut(s) 1606
BstSCI CCNGG 9 cut(s) 44, 747, 864, 1119, 1350, 1776, 1879, 2092, 2099
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 1 cut(s) 1850
BstV1I GCAGC 2 cut(s) 679, 1436
BstV2I GAAGAC 4 cut(s) 294, 348, 635, 777
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 2065, 2097
BtrI CACGTC 1 cut(s) 1785
BtsI GCAGTG 2 cut(s) 667, 1386
BtuMI TCGCGA 1 cut(s) 1850
Cac8I GCNNGC 1 cut(s) 1571
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 52, 2096
Csp6I GTAC 4 cut(s) 348, 607, 1628, 2136
CviAII CATG 4 cut(s) 161, 1152, 1263, 1691
CviQI GTAC 4 cut(s) 348, 607, 1628, 2136
Eam1104I CTCTTC 5 cut(s) 12, 318, 1795, 1999, 2064
EarI CTCTTC 5 cut(s) 12, 318, 1795, 1999, 2064
Eco130I CCWWGG 1 cut(s) 1856
Eco24I GRGCYC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 297, 1967, 2088
Eco81I CCTNAGG 1 cut(s) 687
Eco91I GGTNACC 1 cut(s) 1606
EcoO109I RGGNCCY 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 1606
EcoRI GAATTC 1 cut(s) 1115
EcoRII CCWGG 6 cut(s) 44, 864, 1119, 1350, 1776, 1879
EcoT14I CCWWGG 1 cut(s) 1856
EcoT22I ATGCAT 2 cut(s) 1529, 1989
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 1856
FaeI CATG 4 cut(s) 164, 1155, 1266, 1694
FaqI GGGAC 4 cut(s) 458, 1137, 1816, 2076
FatI CATG 4 cut(s) 160, 1151, 1262, 1690
FauI CCCGC 1 cut(s) 1543
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 3 cut(s) 169, 693, 1450
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 3 cut(s) 169, 693, 1450
FspBI CTAG 3 cut(s) 386, 603, 2126
GlaI GCGC 1 cut(s) 167
GluI GCNGC 3 cut(s) 169, 693, 1450
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 2065, 2097
HapII CCGG 4 cut(s) 149, 748, 2094, 2101
HhaI GCGC 1 cut(s) 168
Hin1II CATG 4 cut(s) 164, 1155, 1266, 1694
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 1949
HpaII CCGG 4 cut(s) 149, 748, 2094, 2101
HphI GGTGA 6 cut(s) 479, 919, 1145, 1493, 1600, 1989
Hpy166II GTNNAC 7 cut(s) 348, 548, 928, 1009, 1756, 1870, 2083
Hpy188I TCNGA 7 cut(s) 70, 210, 235, 1054, 1495, 1714, 2133
Hpy8I GTNNAC 7 cut(s) 348, 548, 928, 1009, 1756, 1870, 2083
HpyAV CCTTC 4 cut(s) 435, 573, 898, 963
HpyCH4III ACNGT 9 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198, 1480
HpyCH4IV ACGT 2 cut(s) 1630, 1784
HpyF10VI GCNNNNNNNGC 5 cut(s) 483, 580, 1533, 1593, 2103
HpySE526I ACGT 2 cut(s) 1630, 1784
Hsp92II CATG 4 cut(s) 164, 1155, 1266, 1694
HspAI GCGC 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 148
LmnI GCTCC 1 cut(s) 771
Lsp1109I GCAGC 2 cut(s) 679, 1436
MaeI CTAG 3 cut(s) 386, 603, 2126
MaeII ACGT 2 cut(s) 1630, 1784
MaeIII GTNAC 8 cut(s) 8, 654, 1220, 1258, 1384, 1435, 1472, 1606
MfeI CAATTG 1 cut(s) 1311
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 3 cut(s) 550, 704, 1975
MlyI GAGTC 3 cut(s) 753, 1049, 2045
MmeI TCCRAC 4 cut(s) 443, 564, 2013, 2081
Mph1103I ATGCAT 2 cut(s) 1529, 1989
MroI TCCGGA 1 cut(s) 148
MroXI GAANNNNTTC 3 cut(s) 156, 1166, 1341
MseI TTAA 4 cut(s) 647, 714, 1094, 1665
MslI CAYNNNNRTG 1 cut(s) 1131
MspA1I CMGCKG 2 cut(s) 1550, 1945
MspI CCGG 4 cut(s) 149, 748, 2094, 2101
MspR9I CCNGG 9 cut(s) 46, 749, 866, 1121, 1352, 1778, 1881, 2094, 2101
MunI CAATTG 1 cut(s) 1311
MvaI CCWGG 6 cut(s) 46, 866, 1121, 1352, 1778, 1881
MvnI CGCG 1 cut(s) 1850
MwoI GCNNNNNNNGC 5 cut(s) 483, 580, 1533, 1593, 2103
NciI CCSGG 3 cut(s) 749, 2094, 2101
NlaIII CATG 4 cut(s) 164, 1155, 1266, 1694
NlaIV GGNNCC 4 cut(s) 179, 1169, 2098, 2105
NmuCI GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1472, 1606
NruI TCGCGA 1 cut(s) 1850
NsiI ATGCAT 2 cut(s) 1529, 1989
NspI RCATGY 1 cut(s) 1266
OliI CACNNNNGTG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 160
PciI ACATGT 1 cut(s) 1262
PcsI WCGNNNNNNNCGW 1 cut(s) 1847
PdmI GAANNNNTTC 3 cut(s) 156, 1166, 1341
PfeI GAWTC 8 cut(s) 145, 230, 489, 532, 568, 976, 1619, 1745
PkrI GCNGC 3 cut(s) 170, 694, 1451
PleI GAGTC 3 cut(s) 752, 1049, 2044
PpsI GAGTC 3 cut(s) 752, 1049, 2044
Ppu21I YACGTR 1 cut(s) 1631
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 1262
PshAI GACNNNNGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1458
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 6 cut(s) 44, 864, 1119, 1350, 1776, 1879
PspEI GGTNACC 1 cut(s) 1606
PspGI CCWGG 6 cut(s) 44, 864, 1119, 1350, 1776, 1879
PspN4I GGNNCC 4 cut(s) 179, 1169, 2098, 2105
PspPI GGNCC 2 cut(s) 52, 2096
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 1144
RruI TCGCGA 1 cut(s) 1850
RsaI GTAC 4 cut(s) 349, 608, 1629, 2137
RsaNI GTAC 4 cut(s) 348, 607, 1628, 2136
RseI CAYNNNNRTG 1 cut(s) 1131
SaqAI TTAA 4 cut(s) 647, 714, 1094, 1665
SatI GCNGC 3 cut(s) 169, 693, 1450
Sau96I GGNCC 2 cut(s) 52, 2096
SchI GAGTC 3 cut(s) 753, 1049, 2045
ScrFI CCNGG 9 cut(s) 46, 749, 866, 1121, 1352, 1778, 1881, 2094, 2101
SduI GDGCHC 3 cut(s) 550, 704, 1975
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 1131
SmlI CTYRAG 1 cut(s) 2086
SmoI CTYRAG 1 cut(s) 2086
SsiI CCGC 4 cut(s) 169, 769, 1550, 1943
SspMI CTAG 3 cut(s) 386, 603, 2126
StyD4I CCNGG 9 cut(s) 44, 747, 864, 1119, 1350, 1776, 1879, 2092, 2099
StyI CCWWGG 1 cut(s) 1856
TaaI ACNGT 9 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198, 1480
TaiI ACGT 2 cut(s) 1633, 1787
TaqI TCGA 7 cut(s) 376, 439, 566, 836, 1201, 1841, 1962
TatI WGTACW 2 cut(s) 347, 2135
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 8 cut(s) 145, 230, 489, 532, 568, 976, 1619, 1745
Tru1I TTAA 4 cut(s) 647, 714, 1094, 1665
Tru9I TTAA 4 cut(s) 647, 714, 1094, 1665
TseFI GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1472, 1606
TseI GCWGC 2 cut(s) 692, 1449
Tsp45I GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1472, 1606
TspDTI ATGAA 9 cut(s) 149, 296, 351, 474, 524, 854, 989, 1288, 1894
TspGWI ACGGA 5 cut(s) 482, 742, 884, 1079, 1332
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 8 cut(s) 211, 406, 413, 805, 842, 932, 1115, 1661
XbaI TCTAGA 1 cut(s) 2125
XceI RCATGY 1 cut(s) 1266
XcmI CCANNNNNNNNNTGG 1 cut(s) 1127
XmiI GTMKAC 1 cut(s) 927
XmnI GAANNNNTTC 3 cut(s) 156, 1166, 1341
XspI CTAG 3 cut(s) 386, 603, 2126
Zsp2I ATGCAT 2 cut(s) 1529, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.