Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003275

Physical Location & Seq

Genomic Coordinates Forward (+)

59664849 .. 59672015

Gene Structure 7167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0474100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTCCGAATATACAAGATGTTCCAAACCCATGGTTCCAACAAAAAGATCAAAGGAACCGTGGTGCTGATGAAGAAGAATTTTTTTGACTTCAATGACTTTAATGCTTCGGTTCTCGATCGTGTGAAGGAGTTTTTGGGCCGACGAGTTTCTTTGCAGCTCATTAGTGCTGTTAATGGTGATTCTTCAAATGAATCGCAAGGGAAACTCGGAAAATTAGGATATTTGGAGAAGTGGATTACCATAATCAGTCCGTTAACAGCAGGGGGAGAGACTAAATTCATGGTTAGCTTTGACGACGTTGAAGGCGAAATAGGAGTTCCAGGAGCATTCTTAATAAGAAACAATCATCACAGTGAGTTCTTCCTTAAGACGGTCACACTCGAAGATGTTCCCGGTGCGGGTCAGATCCACTTTGTTTGCAACTCATGGGTTTACCCTGCATCCAAATACAAGAAAGACCGTATTTTCTTTGCTAACAAGACGTATCTTCCGAGTGATACACCATTGGCACTACGCAAATACAGACAACAGGAACTTGAGCAGTTGAGAGGAAATGGAACAGGAGAGCTAAACGAATGGGAGAGGGTCTACGACTATGCTTACTACAATGATCTCGGTGACCCAGACAGCGGTTCCCACTATGCCCGTCCAGTTCTTGGAGGGTCTAGCCAGTATCCTTACCCTCGTAGAGGAAGAACTGGTCGACCACCAACAAGGACAGGAAAAGATTCACCATGCTGCAAGCAATGGTTTAAAACAGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

29.22

Weight (kDa)

9.26

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	52 - 158	5.2e-20	PLAT/LH2 domain
Lipoxygenase	PF00305	172 - 244	5.8e-31	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420 FvH4_5g11420
malus_domestica	MD06G1113900.v1.1 MD14G1135100.v1.1
prunus_persica	Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1 Prupe.5G126700_v2.0.a1
pyrus_communis	pycom06g10640 pycom14g10840
rosa_chinensis	RchiOBHm_Chr7g0186451
rosa_laevigata	RLG00000004844
rosa_multiflora	Rmu_sc0000645.1_g000039
rosa_roxburghii	Rroxscaffold_3G00268130
rosa_rugosa	Rorug06G0474100 Rorug06G0474100 Rorug06G0474200 Rorug06G0474300 Rorug06G0474400
rosa_samantha	Rh7AG067000 Rh7BG082700 Rh7CG080900 Rh7DG081500
rosa_wichuraiana	Rw7G006790 Rw7G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	2 cut(s)	591, 706
AciI	CCGC	2 cut(s)	401, 633
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	79, 278
AfiI	CCNNNNNNNGG	5 cut(s)	373, 401, 632, 659, 692
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	94, 189, 305
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	3 cut(s)	160, 291, 571
AluI	AGCT	3 cut(s)	160, 291, 571
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	157, 741
ApoI	RAATTY	2 cut(s)	79, 278
Asp700I	GAANNNNTTC	2 cut(s)	390, 730
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	3 cut(s)	191, 632, 726
BbvI	GCAGC	2 cut(s)	169, 728
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	2 cut(s)	158, 742
BlsI	GCNGC	2 cut(s)	159, 743
Bme1390I	CCNGG	2 cut(s)	324, 396
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	37, 58, 637
BmrFI	CCNGG	2 cut(s)	324, 396
BmsI	GCATC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	31, 60
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 401, 632, 659, 692
Bse1I	ACTGG	3 cut(s)	653, 673, 706
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	31, 60
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	5 cut(s)	373, 401, 632, 659, 692
BseMI	GCAATG	1 cut(s)	755
BseNI	ACTGG	3 cut(s)	653, 673, 706
BseXI	GCAGC	2 cut(s)	169, 728
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	5 cut(s)	373, 401, 632, 659, 692
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	48, 118, 408, 613
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	2 cut(s)	401, 633
BspANI	GGCC	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	37, 58, 637
BspPI	GGATC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	755
BsrI	ACTGG	3 cut(s)	653, 673, 706
BssECI	CCNNGG	2 cut(s)	31, 60
BssMI	GATC	4 cut(s)	48, 118, 408, 613
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	4 cut(s)	61, 356, 376, 464
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	746
BstDSI	CCRYGG	2 cut(s)	31, 60
BstEII	GGTNACC	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	1 cut(s)	443
BstKTI	GATC	4 cut(s)	51, 121, 411, 616
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	48, 118, 408, 613
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	322, 394
BstV1I	GCAGC	2 cut(s)	169, 728
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	31, 60
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	401, 436
CviAII	CATG	4 cut(s)	32, 283, 429, 738
CviJI	RGCY	5 cut(s)	141, 160, 291, 571, 672
CviKI_1	RGCY	5 cut(s)	141, 160, 291, 571, 672
DpnI	GATC	4 cut(s)	50, 120, 410, 615
DpnII	GATC	4 cut(s)	48, 118, 408, 613
DraI	TTTAAA	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	35, 286, 432, 741
FaiI	YATR	8 cut(s)	13, 33, 245, 284, 430, 600, 645, 739
FatI	CATG	4 cut(s)	31, 282, 428, 737
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	2 cut(s)	591, 706
Fnu4HI	GCNGC	2 cut(s)	158, 742
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	2 cut(s)	158, 742
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	2 cut(s)	158, 742
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	4 cut(s)	35, 286, 432, 741
HincII	GTYRAC	2 cut(s)	258, 707
HindII	GTYRAC	2 cut(s)	258, 707
HinfI	GANTC	3 cut(s)	182, 194, 731
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	3 cut(s)	191, 632, 726
Hpy166II	GTNNAC	4 cut(s)	258, 436, 592, 707
Hpy188I	TCNGA	4 cut(s)	8, 212, 408, 495
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	4 cut(s)	258, 436, 592, 707
Hpy99I	CGWCG	2 cut(s)	147, 302
HpyAV	CCTTC	2 cut(s)	121, 299
HpyCH4III	ACNGT	4 cut(s)	61, 356, 376, 464
HpyCH4IV	ACGT	2 cut(s)	300, 485
HpyCH4V	TGCA	4 cut(s)	157, 423, 443, 744
HpySE526I	ACGT	2 cut(s)	300, 485
Hsp92II	CATG	4 cut(s)	35, 286, 432, 741
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	48, 118, 408, 613
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	2 cut(s)	169, 728
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	300, 485
MaeIII	GTNAC	2 cut(s)	376, 620
MalI	GATC	4 cut(s)	50, 120, 410, 615
MboI	GATC	4 cut(s)	48, 118, 408, 613
MboII	GAAGA	7 cut(s)	85, 88, 177, 355, 398, 482, 708
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	3 cut(s)	79, 215, 278
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	545, 579, 656, 686, 696
MroXI	GAANNNNTTC	2 cut(s)	390, 730
MseI	TTAA	6 cut(s)	102, 174, 257, 335, 369, 756
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	324, 396
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	324
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	4 cut(s)	48, 118, 408, 613
NlaIII	CATG	4 cut(s)	35, 286, 432, 741
NlaIV	GGNNCC	3 cut(s)	37, 58, 637
NmuCI	GTSAC	2 cut(s)	376, 620
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 491
PctI	GAATGC	1 cut(s)	329
PdmI	GAANNNNTTC	2 cut(s)	390, 730
PfeI	GAWTC	3 cut(s)	182, 194, 731
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	159, 743
Ple19I	CGATCG	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	37, 58, 637
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	408
PvuI	CGATCG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	705
SaqAI	TTAA	6 cut(s)	102, 174, 257, 335, 369, 756
SatI	GCNGC	2 cut(s)	158, 742
Sau3AI	GATC	4 cut(s)	48, 118, 408, 613
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	324, 396
SetI	ASST	5 cut(s)	162, 293, 303, 488, 573
SfaNI	GCATC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	368, 539
SmoI	CTYRAG	2 cut(s)	368, 539
Sse9I	AATT	3 cut(s)	79, 215, 278
SsiI	CCGC	2 cut(s)	401, 633
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	322, 394
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	61, 356, 376, 464
TaiI	ACGT	2 cut(s)	303, 488
TaqI	TCGA	3 cut(s)	117, 384, 706
TasI	AATT	3 cut(s)	79, 215, 278
TfiI	GAWTC	3 cut(s)	182, 194, 731
Tru1I	TTAA	6 cut(s)	102, 174, 257, 335, 369, 756
Tru9I	TTAA	6 cut(s)	102, 174, 257, 335, 369, 756
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	376, 620
TseI	GCWGC	2 cut(s)	157, 741
Tsp45I	GTSAC	2 cut(s)	376, 620
TspDTI	ATGAA	3 cut(s)	86, 207, 271
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	659
Vha464I	CTTAAG	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	2 cut(s)	79, 278
XmiI	GTMKAC	2 cut(s)	591, 706
XmnI	GAANNNNTTC	2 cut(s)	390, 730
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.