Rh7DG081500

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003275
Physical Location & Seq
Reverse (-)
6534796 .. 6539757
4962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG081500.1

Sequence Viewer

Length: 2388 bp
ATGGGGAGTTACAGTGAAGAGTGTGAGGATCAATTTTATGATACCAGGGAGGACCTATCTTCTGTGTCAGATTGGGGTGCAGATTGCTGTGAGGACTGTAGTCCTATTGCTTCGGTTTTTTCAAGGTATGAGTGTTGGGGTAAGAACCCGGAAAGTGTTCATGAGCGCCGCCATAGGTTCCTCAAATGGATGGGTTTGGATTTAGATCGGAATTTGAGTATGACAGAAGAATCAGATGATGGCTTCTTTATTGACAGAAGTGAAATGGGTATTGATAGAATGAAAGAAGACAGTGGGGTGGTGTTGAGAACTTCAGGATTTGAAGAGGGGTGTTGCTCAAATCAGTGTACAGTGTCTTCTTCATCAAGTGAAGTTCGAGTATCACTAGGAAATGCTTTGGATGAGAATTTTGAATTTCCAACGAGGAAATTGAATGATCGAAGGGACTTTGTTGTGGATGAATTGGGTGAGAATTGCATACTCAGCAGATTCCGTGAGTTGAGACTAAATCAGTTGGTCAGTTCTGGGGAGATTCATTCCAACCGTGCCCCAGCACCATCTCCTTCAATTGAGCAATTATTGCAGAGAGAAGTTGAAAACGCTAGGTACTTGCTTGATGCAAAAAAGAAGACTAAAAGAGGATGGTTAAAGAAGTTACGCAATGGGATGTGTGTTGCTGATAAACCTGAGGCTGCACTGAGCCCCATCAGTCTTCAATCTGCAACACGGACAGGGATGCAAAGAGTCCGGGTTCAATCAAGTAAAATGCGGAGCAAGGAACTGTCTTCTCTTTATGGTGGGCAAAATTTTTCGGCTCACAAGGGGTCAATTTTGTCGATGAAGTTCAGTCTTGATGGGCAACACCTGGCAAGTGCTGGTCAAGATGGTATCGTCCGTGTATGGAAGGTGATTGAGGATGAGAGAATAGACAAATTTGATATTGCGAATGATCCTTCTTCTCTATACTTCAAAATGAATCCATTTTCTAAGTTAGGCTCTCAGGTTGTGGACAAAGAGAAACAAAGTAATGCGAAGAAATTGGGTGGATCATCAGACTCAGCTTGTGTGATTTTCCCTCCAAAGATTTTCCGTTTAATGGAGAAGCCTCTGCACGAATTCCAGGGACACAGTGGTGATGTCTTGGATCTCTCATGGTCAAAGAATGGGTTTCTGCTCTCATCCTCTGTTGATAAGACAGTTCGACTATGGCAAGTGGGATGTGACAGATGCCTGAGAGTTTTCTCTCATAATAATTATGTGACATGTGTTGATTTCAACCCTCTGGATGATAATTATTTCATCAGTGGTTCAATTGACGGAAAAGTTCGCATCTGGGAAATTATTCGTTGTCTGGTTGTGGATTATATTGATGTTCGCGAGATAGTCACTGCTGTATCTTATCGTCCTGATGGAGAGGGAGGAATTGTGGGCTTTGTCACCGGAAATTGCTGCTTTTATAATATCATAGATAATCACCTGAAATTGGATGCTGAGATATGCATACAGGGCAAAAAGAAGTCAGCGGGAAAGAGGATTACTGGCTTGCAGTTTTCTCCAAGCAACCCAAGCAAGGTTATGGTCACCTCTGCTGATTCAGTAGTACGTGTCATTTCTGGGTCTAAGGTCATCTGCAAATTTAAGGGTATGTGTCATCATTTGCAATTAGTTTTTATTGCCCCTACATCCAGTGCCAGAGGTCAAATCTCCCCAGCCACCCTGGTTGGTCTCCCTTGTGTCCAAACTAGTCTACATCAGTTCTATCATTTACTGATCTATCTTTCCTCTTTAGGTCTGCGAAGTGGAGGAAGCCATGTTTCTGCATCTTTTACCTCAGATGGAAACCACATTGTTTCGGCGAGTGAGGATTCAAGTGTTCACATCTGGAACTACAATAGCCAGGACACGTCCTCTTCACGATCAAAGAACATAAGGTCTTGTGAGAGTTTCGTGTCCCACAACTCGATGATCGCGATACCTTGGAATGGTGTGAACGATCTCCCAGGAACACTTCCATCCCCTACATTCATTGGGGATGCTCAGGGAAGAAGCAGCCTTGATAGTCCACTGAAGCTTCACAATTTCGATGAGAGAACACAACAGAAAATGCATCTCTCTTCACCTGATTGCTTCTCTCTGGGTCGTGGGTTTTTGTTGGAGTCATTGCCAAAGGGAACTCCAACTTGGCCCGAAGAGAAACTAGTAAACTCAAGTCCCGTGCTCCCGGTGCCTGTTTCCCCAACAATGTCTAGATCAGAGTACAGGTTTTTGAAGAATGCTTGTCAGAGCATGTCTGCTTCTTCGCATATGTGGGGCCTCGTGATTGTCACTGCCGGCTGGGACGGACATATCAGAACCTACCACAATTATGGGTTACCGACTCGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

795

Amino Acids

88.55

Weight (kDa)

7.05

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 244 - 308 8.3e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 260 - 446 6.2e-12 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 268 - 309 5.2e-06 WDR3 first beta-propeller domain
WD40 PF00400 269 - 301 3.3e-07 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 269 - 323 4.6e-07 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 269 - 319 2.3e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 269 - 311 5.4e-06 THOC3 beta-propeller domain
WD40_Prp19 PF24814 332 - 486 2.3e-13 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 361 - 549 4.9e-24 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 365 - 447 2.2e-12 WDR3 first beta-propeller domain
WD40 PF00400 368 - 403 2.1e-08 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 369 - 430 3.8e-07 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 369 - 535 3.2e-11 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 373 - 453 5.4e-11 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 376 - 551 1.9e-15 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 379 - 535 2.8e-07 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 393 - 503 5.6e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 409 - 445 7.8e-07 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 430 - 544 1.1e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1458
AccB1I GGYRCC 1 cut(s) 2224
AccI GTMKAC 1 cut(s) 1747
AccII CGCG 2 cut(s) 1377, 1970
AciI CCGC 3 cut(s) 169, 769, 1523
AclWI GGATC 4 cut(s) 36, 944, 1054, 1152
AcsI RAATTY 7 cut(s) 211, 406, 413, 805, 932, 1115, 1634
AcuI CTGAAG 2 cut(s) 297, 2087
AfaI GTAC 4 cut(s) 349, 608, 1602, 2258
AfiI CCNNNNNNNGG 4 cut(s) 1096, 1483, 1570, 1982
AflIII ACRYGT 3 cut(s) 1262, 1603, 1902
AhlI ACTAGT 2 cut(s) 1742, 2197
AjiI CACGTC 1 cut(s) 1905
AjnI CCWGG 6 cut(s) 44, 864, 1119, 1716, 1896, 1999
AjuI GAANNNNNNNTTGG 2 cut(s) 2164, 2196
AleI CACNNNNGTG 1 cut(s) 1131
AluBI AGCT 2 cut(s) 1061, 2071
AluI AGCT 2 cut(s) 1061, 2071
Alw21I GWGCWC 1 cut(s) 2220
Alw26I GTCTC 2 cut(s) 496, 1730
AlwI GGATC 4 cut(s) 36, 944, 1054, 1152
AoxI GGCC 2 cut(s) 2183, 2311
ApeKI GCWGC 3 cut(s) 692, 1449, 2049
ApoI RAATTY 7 cut(s) 211, 406, 413, 805, 932, 1115, 1634
Asp700I GAANNNNTTC 2 cut(s) 156, 1341
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 3 cut(s) 52, 2184, 2311
AsuC2I CCSGG 3 cut(s) 149, 749, 2222
AsuHPI GGTGA 7 cut(s) 479, 919, 1145, 1429, 1466, 1573, 2109
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 550
BaeI ACNNNNGTAYC 2 cut(s) 1377, 1410
BanI GGYRCC 1 cut(s) 2224
BanII GRGCYC 1 cut(s) 704
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BauI CACGAG 1 cut(s) 2315
BbsI GAAGAC 5 cut(s) 294, 348, 635, 704, 777
Bbv12I GWGCWC 1 cut(s) 2220
BbvI GCAGC 3 cut(s) 679, 1436, 2061
BciT130I CCWGG 6 cut(s) 46, 866, 1121, 1718, 1898, 2001
BcnI CCSGG 3 cut(s) 149, 749, 2222
BcoDI GTCTC 2 cut(s) 496, 1730
BcuI ACTAGT 2 cut(s) 1742, 2197
BfaI CTAG 5 cut(s) 386, 603, 1743, 2198, 2247
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 4 cut(s) 169, 693, 1450, 2050
BlsI GCNGC 4 cut(s) 170, 694, 1451, 2051
Bme1390I CCNGG 9 cut(s) 46, 149, 749, 866, 1121, 1718, 1898, 2001, 2222
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 1905
BmgT120I GGNCC 3 cut(s) 52, 2184, 2311
BmiI GGNNCC 3 cut(s) 179, 2226, 2312
BmrFI CCNGG 9 cut(s) 46, 149, 749, 866, 1121, 1718, 1898, 2001, 2222
BmsI GCATC 8 cut(s) 607, 726, 1217, 1338, 1477, 1829, 2023, 2116
BoxI GACNNNNGTC 1 cut(s) 99
BpiI GAAGAC 5 cut(s) 294, 348, 635, 704, 777
Bpu10I CCTNAGC 1 cut(s) 2037
BpuEI CTTGAG 1 cut(s) 2191
BpuMI CCSGG 3 cut(s) 149, 749, 2222
BsaAI YACGTR 1 cut(s) 1604
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 1730
BsaJI CCNNGG 5 cut(s) 45, 1120, 1716, 1976, 1999
BsaWI WCCGGW 1 cut(s) 1439
BsaXI ACNNNNNCTCC 3 cut(s) 28, 1410, 1440
Bsc4I CCNNNNNNNGG 4 cut(s) 1096, 1483, 1570, 1982
Bse118I RCCGGY 1 cut(s) 2330
Bse1I ACTGG 2 cut(s) 1543, 1686
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 667, 2159
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 6 cut(s) 46, 866, 1121, 1718, 1898, 2001
BseDI CCNNGG 5 cut(s) 45, 1120, 1716, 1976, 1999
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 1096, 1483, 1570, 1982
BseMI GCAATG 2 cut(s) 667, 2159
BseMII CTCAG 9 cut(s) 496, 678, 689, 1013, 1071, 1223, 1482, 1845, 2051
BseNI ACTGG 2 cut(s) 1543, 1686
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 3 cut(s) 679, 1436, 2061
BseYI CCCAGC 3 cut(s) 550, 1708, 2334
BsgI GTGCAG 3 cut(s) 99, 678, 1094
Bsh1236I CGCG 2 cut(s) 1377, 1970
BshFI GGCC 2 cut(s) 2185, 2313
BshNI GGYRCC 1 cut(s) 2224
BsiHKAI GWGCWC 1 cut(s) 2220
BsiSI CCGG 5 cut(s) 149, 748, 1440, 2222, 2331
BslFI GGGAC 5 cut(s) 458, 1137, 1936, 2196, 2351
BslI CCNNNNNNNGG 4 cut(s) 1096, 1483, 1570, 1982
BsmAI GTCTC 2 cut(s) 496, 1730
BsmFI GGGAC 5 cut(s) 458, 1137, 1936, 2196, 2351
BsmI GAATGC 1 cut(s) 2278
BsnI GGCC 2 cut(s) 2185, 2313
Bso31I GGTCTC 1 cut(s) 1730
Bsp1286I GDGCHC 3 cut(s) 550, 704, 2220
Bsp1407I TGTACA 1 cut(s) 347
Bsp68I TCGCGA 2 cut(s) 1377, 1970
BspACI CCGC 3 cut(s) 169, 769, 1523
BspANI GGCC 2 cut(s) 2185, 2313
BspCNI CTCAG 9 cut(s) 495, 679, 690, 1012, 1070, 1224, 1483, 1844, 2050
BspFNI CGCG 2 cut(s) 1377, 1970
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 179, 2226, 2312
BspPI GGATC 4 cut(s) 36, 944, 1054, 1152
BspT107I GGYRCC 1 cut(s) 2224
BspTNI GGTCTC 1 cut(s) 1730
BsrDI GCAATG 2 cut(s) 667, 2159
BsrFI RCCGGY 1 cut(s) 2330
BsrGI TGTACA 1 cut(s) 347
BsrI ACTGG 2 cut(s) 1543, 1686
BssAI RCCGGY 1 cut(s) 2330
BssECI CCNNGG 5 cut(s) 45, 1120, 1716, 1976, 1999
BssSI CACGAG 1 cut(s) 2315
BssT1I CCWWGG 1 cut(s) 1976
Bst2BI CACGAG 1 cut(s) 2315
Bst2UI CCWGG 6 cut(s) 46, 866, 1121, 1718, 1898, 2001
Bst4CI ACNGT 8 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198
Bst6I CTCTTC 5 cut(s) 12, 318, 1915, 2119, 2184
BstAPI GCANNNNNTGC 1 cut(s) 580
BstAUI TGTACA 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 1604
BstC8I GCNNGC 2 cut(s) 1544, 2332
BstEII GGTNACC 2 cut(s) 1579, 2370
BstFNI CGCG 2 cut(s) 1377, 1970
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 496, 1730
BstMWI GCNNNNNNNGC 5 cut(s) 483, 580, 1506, 1566, 2224
BstNI CCWGG 6 cut(s) 46, 866, 1121, 1718, 1898, 2001
BstNSI RCATGY 2 cut(s) 1266, 2290
BstPAI GACNNNNGTC 1 cut(s) 99
BstPI GGTNACC 2 cut(s) 1579, 2370
BstSCI CCNGG 9 cut(s) 44, 147, 747, 864, 1119, 1716, 1896, 1999, 2220
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 2 cut(s) 1377, 1970
BstV1I GCAGC 3 cut(s) 679, 1436, 2061
BstV2I GAAGAC 5 cut(s) 294, 348, 635, 704, 777
BstX2I RGATCY 1 cut(s) 1144
BstXI CCANNNNNNTGG 1 cut(s) 2366
BstYI RGATCY 1 cut(s) 1144
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 2185, 2313
BtrI CACGTC 1 cut(s) 1905
BtsI GCAGTG 2 cut(s) 1386, 2325
BtuMI TCGCGA 2 cut(s) 1377, 1970
Cac8I GCNNGC 2 cut(s) 1544, 2332
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 2330
Cfr13I GGNCC 3 cut(s) 52, 2184, 2311
Csp6I GTAC 4 cut(s) 348, 607, 1601, 2257
CspCI CAANNNNNGTGG 2 cut(s) 1702, 1737
CviAII CATG 5 cut(s) 161, 1152, 1263, 1811, 2287
CviQI GTAC 4 cut(s) 348, 607, 1601, 2257
Eam1104I CTCTTC 5 cut(s) 12, 318, 1915, 2119, 2184
EarI CTCTTC 5 cut(s) 12, 318, 1915, 2119, 2184
Eco130I CCWWGG 1 cut(s) 1976
Eco24I GRGCYC 1 cut(s) 704
Eco31I GGTCTC 1 cut(s) 1730
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 297, 2087
Eco81I CCTNAGG 1 cut(s) 687
Eco91I GGTNACC 2 cut(s) 1579, 2370
EcoO109I RGGNCCY 2 cut(s) 52, 2311
EcoO65I GGTNACC 2 cut(s) 1579, 2370
EcoRI GAATTC 1 cut(s) 1115
EcoRII CCWGG 6 cut(s) 44, 864, 1119, 1716, 1896, 1999
EcoT14I CCWWGG 1 cut(s) 1976
EcoT22I ATGCAT 2 cut(s) 1502, 2109
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 1976
FaeI CATG 5 cut(s) 164, 1155, 1266, 1814, 2290
FaqI GGGAC 5 cut(s) 458, 1137, 1936, 2196, 2351
FatI CATG 5 cut(s) 160, 1151, 1262, 1810, 2286
FauI CCCGC 1 cut(s) 1516
FauNDI CATATG 1 cut(s) 2304
FblI GTMKAC 1 cut(s) 1747
Fnu4HI GCNGC 4 cut(s) 169, 693, 1450, 2050
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 4 cut(s) 169, 693, 1450, 2050
FspBI CTAG 5 cut(s) 386, 603, 1743, 2198, 2247
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 169, 693, 1450, 2050
GsaI CCCAGC 3 cut(s) 554, 1712, 2338
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 2185, 2313
HapII CCGG 5 cut(s) 149, 748, 1440, 2222, 2331
HhaI GCGC 1 cut(s) 168
Hin1II CATG 5 cut(s) 164, 1155, 1266, 1814, 2290
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 2069
HpaII CCGG 5 cut(s) 149, 748, 1440, 2222, 2331
HphI GGTGA 7 cut(s) 479, 919, 1145, 1429, 1466, 1573, 2109
Hpy166II GTNNAC 7 cut(s) 348, 1009, 1748, 1876, 1990, 2063, 2203
Hpy188I TCNGA 8 cut(s) 70, 210, 235, 1054, 1834, 2254, 2283, 2351
Hpy8I GTNNAC 7 cut(s) 348, 1009, 1748, 1876, 1990, 2063, 2203
HpyAV CCTTC 4 cut(s) 435, 573, 898, 963
HpyCH4III ACNGT 8 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198
HpyCH4IV ACGT 2 cut(s) 1603, 1904
HpyF10VI GCNNNNNNNGC 5 cut(s) 483, 580, 1506, 1566, 2224
HpySE526I ACGT 2 cut(s) 1603, 1904
Hsp92II CATG 5 cut(s) 164, 1155, 1266, 1814, 2290
HspAI GCGC 1 cut(s) 166
KroI GCCGGC 1 cut(s) 2330
KroNI GCCGGC 1 cut(s) 2332
LmnI GCTCC 2 cut(s) 771, 2223
Lsp1109I GCAGC 3 cut(s) 679, 1436, 2061
LweI GCATC 8 cut(s) 607, 726, 1217, 1338, 1477, 1829, 2023, 2116
MaeI CTAG 5 cut(s) 386, 603, 1743, 2198, 2247
MaeII ACGT 2 cut(s) 1603, 1904
MaeIII GTNAC 9 cut(s) 8, 654, 1220, 1258, 1384, 1435, 1579, 2323, 2370
MfeI CAATTG 2 cut(s) 567, 1311
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 3 cut(s) 550, 704, 2220
MlyI GAGTC 4 cut(s) 753, 1049, 2165, 2371
MmeI TCCRAC 4 cut(s) 443, 564, 2133, 2201
Mph1103I ATGCAT 2 cut(s) 1502, 2109
MroNI GCCGGC 1 cut(s) 2330
MroXI GAANNNNTTC 2 cut(s) 156, 1341
MseI TTAA 4 cut(s) 647, 1094, 1638, 2386
MslI CAYNNNNRTG 2 cut(s) 1131, 2364
MspA1I CMGCKG 1 cut(s) 1523
MspI CCGG 5 cut(s) 149, 748, 1440, 2222, 2331
MspR9I CCNGG 9 cut(s) 46, 149, 749, 866, 1121, 1718, 1898, 2001, 2222
MunI CAATTG 2 cut(s) 567, 1311
Mva1269I GAATGC 1 cut(s) 2278
MvaI CCWGG 6 cut(s) 46, 866, 1121, 1718, 1898, 2001
MvnI CGCG 2 cut(s) 1377, 1970
MwoI GCNNNNNNNGC 5 cut(s) 483, 580, 1506, 1566, 2224
NaeI GCCGGC 1 cut(s) 2332
NciI CCSGG 3 cut(s) 149, 749, 2222
NdeI CATATG 1 cut(s) 2304
NgoMIV GCCGGC 1 cut(s) 2330
NlaIII CATG 5 cut(s) 164, 1155, 1266, 1814, 2290
NlaIV GGNNCC 3 cut(s) 179, 2226, 2312
NmuCI GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1579, 2323
NruI TCGCGA 2 cut(s) 1377, 1970
NsiI ATGCAT 2 cut(s) 1502, 2109
NspI RCATGY 2 cut(s) 1266, 2290
OliI CACNNNNGTG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 160
PciI ACATGT 1 cut(s) 1262
PcsI WCGNNNNNNNCGW 1 cut(s) 1967
PctI GAATGC 1 cut(s) 2278
PdiI GCCGGC 1 cut(s) 2332
PdmI GAANNNNTTC 2 cut(s) 156, 1341
PfeI GAWTC 6 cut(s) 230, 489, 532, 976, 1592, 1865
PkrI GCNGC 4 cut(s) 170, 694, 1451, 2051
PleI GAGTC 4 cut(s) 752, 1049, 2164, 2371
PpsI GAGTC 4 cut(s) 752, 1049, 2164, 2371
Ppu21I YACGTR 1 cut(s) 1604
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 1262
PshAI GACNNNNGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1458
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 6 cut(s) 44, 864, 1119, 1716, 1896, 1999
PspEI GGTNACC 2 cut(s) 1579, 2370
PspFI CCCAGC 3 cut(s) 550, 1708, 2334
PspGI CCWGG 6 cut(s) 44, 864, 1119, 1716, 1896, 1999
PspN4I GGNNCC 3 cut(s) 179, 2226, 2312
PspPI GGNCC 3 cut(s) 52, 2184, 2311
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 1144
RruI TCGCGA 2 cut(s) 1377, 1970
RsaI GTAC 4 cut(s) 349, 608, 1602, 2258
RsaNI GTAC 4 cut(s) 348, 607, 1601, 2257
RseI CAYNNNNRTG 2 cut(s) 1131, 2364
SaqAI TTAA 4 cut(s) 647, 1094, 1638, 2386
SatI GCNGC 4 cut(s) 169, 693, 1450, 2050
Sau96I GGNCC 3 cut(s) 52, 2184, 2311
SchI GAGTC 4 cut(s) 753, 1049, 2165, 2371
ScrFI CCNGG 9 cut(s) 46, 149, 749, 866, 1121, 1718, 1898, 2001, 2222
SduI GDGCHC 3 cut(s) 550, 704, 2220
SfaNI GCATC 8 cut(s) 607, 726, 1217, 1338, 1477, 1829, 2023, 2116
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 1131, 2364
SmlI CTYRAG 1 cut(s) 2206
SmoI CTYRAG 1 cut(s) 2206
SpeI ACTAGT 2 cut(s) 1742, 2197
SsiI CCGC 3 cut(s) 169, 769, 1523
SspMI CTAG 5 cut(s) 386, 603, 1743, 2198, 2247
StyD4I CCNGG 9 cut(s) 44, 147, 747, 864, 1119, 1716, 1896, 1999, 2220
StyI CCWWGG 1 cut(s) 1976
TaaI ACNGT 8 cut(s) 14, 98, 293, 352, 545, 783, 1130, 1198
TaiI ACGT 2 cut(s) 1606, 1907
TaqI TCGA 6 cut(s) 376, 439, 836, 1201, 1961, 2082
TatI WGTACW 2 cut(s) 347, 2256
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 6 cut(s) 230, 489, 532, 976, 1592, 1865
Tru1I TTAA 4 cut(s) 647, 1094, 1638, 2386
Tru9I TTAA 4 cut(s) 647, 1094, 1638, 2386
TseFI GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1579, 2323
TseI GCWGC 3 cut(s) 692, 1449, 2049
Tsp45I GTSAC 6 cut(s) 1220, 1258, 1384, 1435, 1579, 2323
TspDTI ATGAA 9 cut(s) 149, 296, 351, 474, 524, 854, 989, 1288, 2014
TspGWI ACGGA 6 cut(s) 482, 742, 884, 1079, 1332, 2355
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 7 cut(s) 211, 406, 413, 805, 932, 1115, 1634
XbaI TCTAGA 1 cut(s) 2246
XceI RCATGY 2 cut(s) 1266, 2290
XcmI CCANNNNNNNNNTGG 1 cut(s) 1127
XmiI GTMKAC 1 cut(s) 1747
XmnI GAANNNNTTC 2 cut(s) 156, 1341
XspI CTAG 5 cut(s) 386, 603, 1743, 2198, 2247
Zsp2I ATGCAT 2 cut(s) 1502, 2109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.