Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012306

Physical Location & Seq

Genomic Coordinates Reverse (-)

28119443 .. 28128003

Gene Structure 8561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTGGACGGACGTGATGGCCAGGCTCCGCAACATCGGAATCTCGGCCCATATCGACTCCGGCAAGACCACTCTCACCGAGAGAATTCTCTACTACACCGGAAAGATCCACGAGATTCACGAGGTCAGAGGCCGAGACGGCGTCGGCGCCAAAATGGACTCCATGGATTTGGAGAGAGAGAGGGAATTACCATTCAGTCCGCTGCCACTTACTGCACTTGGAATGGTTATCAGATTAACATAATTGACACCCCCGGTCACGTTGATTTCACCATTGAGGTTGAGAGAGCTTTGCGTGTTCTTGATGGAGCCATCCTTGTCCTTTGTAGCGTTGGTGGTGTACAGAGTCAGTCAATTACTGTTGATCGGCAAATGAAAAGATACGAGGTTCCAAGAATTGCATTTATAAACAAACTTGATCGAATGGGAGCAGATCCATGGAAAGTTCTGAATCAGATGAGGTCTAAGCTCCGGCATCATGCTGCTGCATTGCAACTTCCTATTGGGTTGGAAGATGATTTTAAGGGTCTTATTGATCTTGTGCAGTTAAAAGCTTTGTATTTTCATGGTTCTAGTGGTCAGGAAATTGTCATTGAAGACATTCCTTCTGATATGGAGGCGTTAGTCGCAGAAAAAAGGCGTGAGCTAATTGAAATTGTTTCCGAAGTTGATGACCAACTTGCTGAAGCATTTCTTGAAGATGTGCCCATTACACCTACTGATCTGGAGGAAGCTGTGCGAAGGGCTACCATCGCAAGGAAATTTATACCTGTGTTCATGGGTAGTGCATTTAAAAACAAGGGTGTACAACCACTCTTGAATGGTGTACTTGGTTATTTACCTTGTCCATCTGAAGTCAGTAACTACGCTCTTGACCAGACTAAGGATGAAGAGAAGGTTATATTAGGTGGAACTCCAGATGGACCTCTTGTAGCATTGGCCTTTAAATTGGAGGAAGGGCGTTTTGGTCAGTTAACCTTTCTAAGAATCTATGAAGGTGTTATACGGAAGGGTGATTTCATTTTTAACATTAACACTGGCAAGAAGATTAAGGTTCCTCGCTTGGTCATTCTGATGAGATGGAGGATATTCAAGAGGCACATGCTGGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

371

Amino Acids

42.19

Weight (kDa)

9.12

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	59 - 281	9.9e-40	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45332 AT1G45332 AT2G45030
fragaria_vesca	FvH4_7g10500 FvH4_7g10500 FvH4_7g10500
malus_domestica	MD07G1111000.v1.1
prunus_persica	Prupe.2G134500_v2.0.a1
pyrus_communis	pycom07g09580
rosa_chinensis	RchiOBHm_Chr1g0348291
rosa_laevigata	RLG00000028669
rosa_multiflora	Rmu_sc0027364.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307040
rosa_rugosa	Rorug01G0194100
rosa_samantha	Rh1AG211300 Rh1BG177800 Rh1CG195700 Rh1DG207300
rosa_wichuraiana	Rw1G017850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	147
AciI	CCGC	2 cut(s)	29, 201
AclWI	GGATC	2 cut(s)	101, 428
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	85, 761
AcuI	CTGAAG	2 cut(s)	705, 873
AcyI	GRCGYC	2 cut(s)	142, 148
AfaI	GTAC	3 cut(s)	342, 807, 828
AfiI	CCNNNNNNNGG	2 cut(s)	756, 883
AgsI	TTSAA	5 cut(s)	596, 653, 698, 820, 1093
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	948, 980
AluBI	AGCT	5 cut(s)	290, 469, 554, 646, 734
AluI	AGCT	5 cut(s)	290, 469, 554, 646, 734
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	101, 428
AoxI	GGCC	4 cut(s)	19, 46, 131, 939
ApeKI	GCWGC	3 cut(s)	203, 482, 485
ApoI	RAATTY	2 cut(s)	85, 761
Asp700I	GAANNNNTTC	2 cut(s)	600, 690
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	47, 923
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	68, 262, 1025
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	708
BalI	TGGCCA	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	147
BarI	GAAGNNNNNNTAC	2 cut(s)	987, 1019
BauI	CACGAG	2 cut(s)	111, 120
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	190, 469, 472
BccI	CCATC	7 cut(s)	11, 299, 320, 758, 856, 914, 1074
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	204, 483, 486
BlsI	GCNGC	3 cut(s)	205, 484, 487
Bme1390I	CCNGG	2 cut(s)	23, 255
Bme18I	GGWCC	1 cut(s)	923
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	47, 923
BmiI	GGNNCC	5 cut(s)	27, 149, 310, 390, 1056
BmrFI	CCNGG	2 cut(s)	23, 255
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	2 cut(s)	746, 900
BpuMI	CCSGG	1 cut(s)	255
BsaHI	GRCGYC	2 cut(s)	142, 148
BsaJI	CCNNGG	3 cut(s)	163, 253, 437
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	756, 883
Bse1I	ACTGG	1 cut(s)	1042
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	163, 253, 437
BseGI	GGATG	2 cut(s)	312, 892
BseLI	CCNNNNNNNGG	2 cut(s)	756, 883
BseMI	GCAATG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	1042
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	190, 469, 472
BsgI	GTGCAG	2 cut(s)	199, 563
BshFI	GGCC	4 cut(s)	21, 48, 133, 941
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	61, 100, 255, 472
BslI	CCNNNNNNNGG	2 cut(s)	756, 883
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	21, 48, 133, 941
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp1407I	TGTACA	2 cut(s)	340, 805
Bsp143I	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
Bsp19I	CCATGG	2 cut(s)	163, 437
BspACI	CCGC	2 cut(s)	29, 201
BspANI	GGCC	4 cut(s)	21, 48, 133, 941
BspLI	GGNNCC	5 cut(s)	27, 149, 310, 390, 1056
BspPI	GGATC	2 cut(s)	101, 428
BspT107I	GGYRCC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	488
BsrGI	TGTACA	2 cut(s)	340, 805
BsrI	ACTGG	1 cut(s)	1042
BssECI	CCNNGG	3 cut(s)	163, 253, 437
BssMI	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
BssNI	GRCGYC	2 cut(s)	142, 148
BssSI	CACGAG	2 cut(s)	111, 120
BssT1I	CCWWGG	2 cut(s)	163, 437
Bst2BI	CACGAG	2 cut(s)	111, 120
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	2 cut(s)	142, 148
BstAUI	TGTACA	2 cut(s)	340, 805
BstDEI	CTNAG	3 cut(s)	465, 882, 983
BstDSI	CCRYGG	2 cut(s)	163, 437
BstF5I	GGATG	2 cut(s)	312, 892
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	6 cut(s)	109, 367, 421, 436, 538, 724
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 626, 752
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	1105
BstSCI	CCNGG	2 cut(s)	21, 253
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	190, 469, 472
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	106, 433
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	2 cut(s)	106, 433
BsuRI	GGCC	4 cut(s)	21, 48, 133, 941
BtgI	CCRYGG	2 cut(s)	163, 437
BtgZI	GCGATG	1 cut(s)	736
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	312, 892
BtsIMutI	CAGTG	1 cut(s)	1035
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	47, 923
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	341, 806, 827
CviAII	CATG	6 cut(s)	164, 438, 479, 566, 778, 1102
CviQI	GTAC	3 cut(s)	341, 806, 827
DdeI	CTNAG	3 cut(s)	465, 882, 983
DinI	GGCGCC	1 cut(s)	149
DpnI	GATC	6 cut(s)	108, 366, 420, 435, 537, 723
DpnII	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
DraI	TTTAAA	2 cut(s)	793, 946
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco130I	CCWWGG	2 cut(s)	163, 437
Eco47I	GGWCC	1 cut(s)	923
Eco57I	CTGAAG	2 cut(s)	705, 873
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	163, 437
EgeI	GGCGCC	1 cut(s)	149
EheI	GGCGCC	1 cut(s)	149
ErhI	CCWWGG	2 cut(s)	163, 437
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	6 cut(s)	167, 441, 482, 569, 781, 1105
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FatI	CATG	6 cut(s)	163, 437, 478, 565, 777, 1101
Fnu4HI	GCNGC	3 cut(s)	204, 483, 486
FokI	GGATG	2 cut(s)	299, 899
Fsp4HI	GCNGC	3 cut(s)	204, 483, 486
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	3 cut(s)	204, 483, 486
GsuI	CTGGAG	2 cut(s)	746, 900
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	4 cut(s)	21, 48, 133, 941
HapII	CCGG	4 cut(s)	61, 100, 255, 472
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	2 cut(s)	142, 148
Hin1II	CATG	6 cut(s)	167, 441, 482, 569, 781, 1105
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	7 cut(s)	40, 57, 116, 159, 346, 451, 987
HpaI	GTTAAC	1 cut(s)	975
HpaII	CCGG	4 cut(s)	61, 100, 255, 472
HphI	GGTGA	3 cut(s)	68, 262, 1025
Hpy166II	GTNNAC	5 cut(s)	7, 341, 806, 827, 975
Hpy188I	TCNGA	9 cut(s)	39, 129, 234, 450, 456, 610, 664, 853, 1074
Hpy188III	TCNNGA	9 cut(s)	120, 302, 581, 695, 725, 817, 872, 917, 1093
Hpy8I	GTNNAC	5 cut(s)	7, 341, 806, 827, 975
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	6 cut(s)	615, 735, 889, 950, 989, 1003
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	13, 261
HpyCH4V	TGCA	6 cut(s)	216, 401, 488, 493, 544, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 626, 752
HpyF3I	CTNAG	3 cut(s)	465, 882, 983
HpySE526I	ACGT	2 cut(s)	13, 261
Hsp92I	GRCGYC	2 cut(s)	142, 148
Hsp92II	CATG	6 cut(s)	167, 441, 482, 569, 781, 1105
HspAI	GCGC	1 cut(s)	148
KasI	GGCGCC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	975
Kzo9I	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
LmnI	GCTCC	4 cut(s)	31, 308, 428, 474
Lsp1109I	GCAGC	3 cut(s)	190, 469, 472
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	2 cut(s)	13, 261
MaeIII	GTNAC	2 cut(s)	257, 860
MalI	GATC	6 cut(s)	108, 366, 420, 435, 537, 723
MboI	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
MboII	GAAGA	5 cut(s)	524, 608, 710, 902, 1057
MflI	RGATCY	2 cut(s)	106, 433
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	21
Mly113I	GGCGCC	1 cut(s)	148
MlyI	GAGTC	3 cut(s)	51, 153, 355
MmeI	TCCRAC	1 cut(s)	489
Mox20I	TGGCCA	1 cut(s)	21
MroXI	GAANNNNTTC	2 cut(s)	600, 690
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	9 cut(s)	237, 522, 548, 792, 945, 974, 1026, 1032, 1050
MslI	CAYNNNNRTG	1 cut(s)	1073
Msp20I	TGGCCA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	4 cut(s)	61, 100, 255, 472
MspR9I	CCNGG	2 cut(s)	23, 255
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	139, 626, 752
NarI	GGCGCC	1 cut(s)	148
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	2 cut(s)	163, 437
NdeII	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
NlaIII	CATG	6 cut(s)	167, 441, 482, 569, 781, 1105
NlaIV	GGNNCC	5 cut(s)	27, 149, 310, 390, 1056
NmeAIII	GCCGAG	2 cut(s)	24, 159
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	1105
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	600, 690
PfeI	GAWTC	4 cut(s)	40, 116, 451, 987
PflFI	GACNNNGTC	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	205, 484, 487
PleI	GAGTC	3 cut(s)	51, 153, 354
PluTI	GGCGCC	1 cut(s)	151
PpsI	GAGTC	3 cut(s)	51, 153, 354
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	27, 149, 310, 390, 1056
PspPI	GGNCC	2 cut(s)	47, 923
PsuI	RGATCY	2 cut(s)	106, 433
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	3 cut(s)	342, 807, 828
RsaNI	GTAC	3 cut(s)	341, 806, 827
RseI	CAYNNNNRTG	1 cut(s)	1073
SaqAI	TTAA	9 cut(s)	237, 522, 548, 792, 945, 974, 1026, 1032, 1050
SatI	GCNGC	3 cut(s)	204, 483, 486
Sau3AI	GATC	6 cut(s)	106, 364, 418, 433, 535, 721
Sau96I	GGNCC	2 cut(s)	47, 923
SchI	GAGTC	3 cut(s)	51, 153, 355
ScrFI	CCNGG	2 cut(s)	23, 255
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	1 cut(s)	484
SfoI	GGCGCC	1 cut(s)	149
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SsiI	CCGC	2 cut(s)	29, 201
SspDI	GGCGCC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	21, 253
StyI	CCWWGG	2 cut(s)	163, 437
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	16, 264
TaqI	TCGA	2 cut(s)	55, 421
TatI	WGTACW	3 cut(s)	340, 805, 826
TfiI	GAWTC	4 cut(s)	40, 116, 451, 987
Tru1I	TTAA	9 cut(s)	237, 522, 548, 792, 945, 974, 1026, 1032, 1050
Tru9I	TTAA	9 cut(s)	237, 522, 548, 792, 945, 974, 1026, 1032, 1050
TscAI	CASTG	1 cut(s)	1042
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	203, 482, 485
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	6 cut(s)	389, 554, 766, 903, 1008, 1009
TspGWI	ACGGA	2 cut(s)	24, 1021
TspRI	CASTG	1 cut(s)	1042
Tth111I	GACNNNGTC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	2 cut(s)	85, 761
XceI	RCATGY	1 cut(s)	1105
XmnI	GAANNNNTTC	2 cut(s)	600, 690
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.