Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008364

Physical Location & Seq

Genomic Coordinates Forward (+)

58459952 .. 58463701

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGTCTTATGACAAAAGGCTCACTGCTGTCAGAAAAGCTGCCTCTCTCACTGCTCGCCTTTGTGAGAAGGTGCAAAAGACGCTGGTGAAGTCGAACGCTTCTTCAAAATCAGATAAAAGTTCGATCACAGTAGTCCATCATGGTAGAGCTTCTGAAAGAATACAAGCATTTGCAGATCATTCTACTGTCGCTACTGCTGGAGATGATATTAATAACGGCGTTTGTAAAATGAAATTGGCAAAGAACTTAGCCTGTCTTGTAGATGAATCTACTCATGTAGATGAGAGAAGAAGACCCAGGAGCGGAATGGAACTCAAGAGGTCTCTTGAACTGCGCATTAAGAAGAGGGTGAAGGAACAATACCTCAATGGGAAGTTTCGAGACCTAATGGCAAAAGTCATTGCCAATCCAGAAACTCTTCAAGATGCTTACGACTGTATCAGACTCAACTCCAATATTGATATGGTGTTAAATGATGAGAAAACTTCTTTTGGTTTTATGGCTGAAGAGCTGTATCTTGGGAATTTTGATGTTAATGCTAATACCTTCTCTATCTCAACAAAGAGTGCGAGGAAAGATGTTTTAGTGCTTCCCAATGTGAATCTGAAGGTCATTCAGGAAGCCATCAGAATTGTTTTAGAAGTTGTTTACAAGCCCCACTTCTCTAAGATTTCACATGGTTACCGAAGTGGGAGGGGGCATTCTACAGCTTTGAAGTACATAAGCAAGGAGACTGCTAGTTCTGATTGGTGGTTTATATTGCTCATTAACAAAAAGCTAGATGCTTGTATTTTTGCTAAACTGATATCAGTAATGGAGGAGAAGATAGAAGACCCTAGCCTCTATGTTATGATCCAAAGCATGTTTCATGCTAATGTACTAAATTTTGAGTTTGGTGGTTTCCCAAAAGGTCATGGTCTTCCACAGGAGGGAGTATTGTCCCCTATATTAATGAATATTTATCTTGACCTATTTGACCGCGAATTTTACAGATTATCAATGAAGTATGAAGCTCTCATTCCAGGTTTTCATACTGATCAAAAGTCCCAGTCTAGGTTGCGCAGCTGGTTTAGGAGGAACCTGAAAGGTAATGATCTTGGCTGTGCAGGTGAAGAGAGTTTTAGAGTCCATTCTTGTCGCTTCATGGATGAGATATTCTTTTCAGTTGCTGGTTCTAAGGATGCAGCTCTTGATTTCAAATCTGAGGTTCTAAATTTCTTACAGAAGTCTTTGCACTTGGAAGTTGATGATCAAACAGAATTATTGCCATGTCAAACGTCACAGGGGATCCGCTTTTTGGGCACCTTGATTAGAAGAAATGTGAAAGAAAGTCCTGCAACAAAAGCAGTCCACAAGTTAAAGGAAAAAGTTGCTTTATTTGGTCTACAAAAGCAAGAGGCATGGGATTCTGGAACAGTTAGTATAGGCAAGAAATGGTTGGGTCATGGTTTGAAGAAGGTCAAGGAATCAGAGATTAAGCATTTAGCTGACAGCAGATCTGTTCTGAGTCAAATTTCCCATTTCCGTAAATCTGGTATGGAAACTGATCATTGGTACAAGTACATGCTGAAGATTTGGATGCAAGATGTCAAAGCCAAAGCAGCAGAGAGCGAGGAAGCTATCCTGTCTAAGTATGTCGCAGAACCAGCTTTACCTGAAGAACTAAGAAACTCCTTTTATGAATTTCAGAGGCATGTGGAAAAATATGTGTCTTCTGAGACCGCTTCTACTCTTGCGCTTTTGCCAAATGCTGGTTCTTCTACTGACTCTGTCATTGTCACTGAGATAATTGCTCCCGTTATTGCAATAAAAAAGCGCCTCCTACGATATGGATTGATCACACGTGATGGTTATCCCCGTACATGCTCTTTGCTTGTTTTACAAGATAATGTTCAAATTATCGACTGGTTTTCTGGTATTGTTCGCCGTTGGCTTAGATGGTATGCCAAATGTGATAACTTCAATGAGGTAAAGCTCTTGATATCTGATCTAGTAAGAAAATCCTGCGTCCGAACTCTAGCAGCAAAGTATCGTGTGCATGAAGCTGAGATAGAAAAACGTTTTGACACTGAACTAAGCAGTATTCCCTCTACCCTAGAAGTTGAGCAAGAGATGGTAAGTGAAACATCAGACCCTCAGGCGTTCGAGAACGATGAGGCTTTAATGTATGGAATATCTTACAGTGGCTTATGTTTGCTCTCTCTAGCAAGAATGGTGAGCCAGTCACGACCTTGCAATTGTTTTGTCATTGGGTGTACAGCTCCAGCACCGAGTGTCTATACTATTCATGTAATGGAAAGGCAGAAATTTCCTGGCTGGAAGACTGGATTCTCAAGTTGTATTCATCCCAGCTTGAATAGACGGAAAATTGGGTTGTGCAAGCAACATTTAAAGAATTTGTATCTTGGTCATATATCACTTCAATCCATTGATTTTGGGGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010467 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

816

Amino Acids

92.75

Weight (kDa)

9.11

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	195 - 415	3.5e-08	Reverse transcriptase (RNA-dependent DNA polymerase)
Intron_maturas2	PF01348	596 - 704	1.8e-10	Type II intron maturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74350
fragaria_vesca	FvH4_7g02870
malus_domestica	MD02G1287300.v1.1
prunus_persica	Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1
pyrus_communis	pycom02g24350
rosa_chinensis	RchiOBHm_Chr1g0323821
rosa_laevigata	RLG00000030266
rosa_roxburghii	Rroxscaffold_4G00326400
rosa_rugosa	Rorug01G0039700
rosa_samantha	Rh1AG057100 Rh1BG048100 Rh1DG062200
rosa_wichuraiana	Rw1G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1097
Acc16I	TGCGCA	2 cut(s)	335, 1061
Acc36I	ACCTGC	1 cut(s)	1097
AccB1I	GGYRCC	1 cut(s)	1301
AccB7I	CCANNNNNTGG	1 cut(s)	1751
AccBSI	CCGCTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	1384
AccII	CGCG	1 cut(s)	981
AciI	CCGC	4 cut(s)	303, 979, 1291, 1722
AclI	AACGTT	1 cut(s)	2059
AclWI	GGATC	3 cut(s)	847, 1282, 1295
AcsI	RAATTY	8 cut(s)	523, 883, 983, 1213, 1512, 1682, 2306, 2395
AcuI	CTGAAG	4 cut(s)	525, 626, 1589, 1677
AcvI	CACGTG	1 cut(s)	1844
AdeI	CACNNNGTG	1 cut(s)	2273
AfaI	GTAC	6 cut(s)	719, 879, 1556, 1562, 1861, 2257
AfiI	CCNNNNNNNGG	5 cut(s)	302, 929, 1053, 1297, 1751
AflIII	ACRYGT	1 cut(s)	1841
AjnI	CCWGG	3 cut(s)	296, 1021, 2311
AjuI	GAANNNNNNNTTGG	4 cut(s)	849, 881, 1738, 1770
Alw26I	GTCTC	4 cut(s)	327, 375, 725, 1712
AlwI	GGATC	3 cut(s)	847, 1282, 1295
AlwNI	CAGNNNCTG	1 cut(s)	1169
ApeKI	GCWGC	5 cut(s)	38, 1062, 1184, 1601, 2021
ApoI	RAATTY	8 cut(s)	523, 883, 983, 1213, 1512, 1682, 2306, 2395
AseI	ATTAAT	2 cut(s)	210, 950
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	4 cut(s)	336, 1062, 1738, 1818
AsuHPI	GGTGA	4 cut(s)	97, 361, 1121, 2227
AxyI	CCTNAGG	1 cut(s)	2136
BaeGI	GKGCMC	1 cut(s)	1304
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BamHI	GGATCC	1 cut(s)	1287
BanI	GGYRCC	1 cut(s)	1301
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbrPI	CACGTG	1 cut(s)	1844
BbsI	GAAGAC	5 cut(s)	298, 837, 911, 1704, 2327
BbvI	GCAGC	5 cut(s)	25, 1074, 1196, 1613, 2033
BccI	CCATC	5 cut(s)	144, 632, 1841, 1932, 2107
BceAI	ACGGC	2 cut(s)	232, 1911
BciT130I	CCWGG	3 cut(s)	298, 1023, 2313
BclI	TGATCA	4 cut(s)	1036, 1249, 1546, 1836
BcoDI	GTCTC	4 cut(s)	327, 375, 725, 1712
BfaI	CTAG	8 cut(s)	738, 779, 837, 1053, 1991, 2018, 2096, 2204
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	1819
BfuAI	ACCTGC	1 cut(s)	1097
BglII	AGATCT	1 cut(s)	1496
BisI	GCNGC	5 cut(s)	39, 1063, 1185, 1602, 2022
BlsI	GCNGC	5 cut(s)	40, 1064, 1186, 1603, 2023
Bme1390I	CCNGG	3 cut(s)	298, 1023, 2313
BmiI	GGNNCC	3 cut(s)	1079, 1289, 1303
BmrFI	CCNGG	3 cut(s)	298, 1023, 2313
BmrI	ACTGGG	1 cut(s)	1042
BmsI	GCATC	4 cut(s)	415, 772, 1171, 1569
BmuI	ACTGGG	1 cut(s)	1042
BpiI	GAAGAC	5 cut(s)	298, 837, 911, 1704, 2327
BpmI	CTGGAG	2 cut(s)	219, 2247
BpuEI	CTTGAG	2 cut(s)	299, 2317
BsaAI	YACGTR	1 cut(s)	1844
BsaBI	GATNNNNATC	1 cut(s)	1851
BsaI	GGTCTC	3 cut(s)	327, 375, 1712
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	5 cut(s)	302, 929, 1053, 1297, 1751
Bse1I	ACTGG	4 cut(s)	1048, 1910, 2221, 2329
Bse21I	CCTNAGG	1 cut(s)	2136
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	1851
BseBI	CCWGG	3 cut(s)	298, 1023, 2313
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	4 cut(s)	1153, 1186, 1584, 2344
BseJI	GATNNNNATC	1 cut(s)	1851
BseLI	CCNNNNNNNGG	5 cut(s)	302, 929, 1053, 1297, 1751
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	6 cut(s)	1194, 1496, 1707, 1773, 2037, 2150
BseNI	ACTGG	4 cut(s)	1048, 1910, 2221, 2329
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	1304
BseXI	GCAGC	5 cut(s)	25, 1074, 1196, 1613, 2033
BseYI	CCCAGC	1 cut(s)	2348
BsgI	GTGCAG	1 cut(s)	1125
Bsh1236I	CGCG	1 cut(s)	981
BshNI	GGYRCC	1 cut(s)	1301
BslFI	GGGAC	2 cut(s)	925, 1030
BslI	CCNNNNNNNGG	5 cut(s)	302, 929, 1053, 1297, 1751
BsmAI	GTCTC	4 cut(s)	327, 375, 725, 1712
BsmFI	GGGAC	2 cut(s)	925, 1030
BsmI	GAATGC	1 cut(s)	700
Bso31I	GGTCTC	3 cut(s)	327, 375, 1712
Bsp1286I	GDGCHC	1 cut(s)	1304
Bsp1407I	TGTACA	1 cut(s)	2255
BspACI	CCGC	4 cut(s)	303, 979, 1291, 1722
BspCNI	CTCAG	6 cut(s)	1195, 1497, 1708, 1774, 2038, 2149
BspFNI	CGCG	1 cut(s)	981
BspLI	GGNNCC	3 cut(s)	1079, 1289, 1303
BspMI	ACCTGC	1 cut(s)	1097
BspPI	GGATC	3 cut(s)	847, 1282, 1295
BspQI	GCTCTTC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	1301
BspTNI	GGTCTC	3 cut(s)	327, 375, 1712
BsrBI	CCGCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	2255
BsrI	ACTGG	4 cut(s)	1048, 1910, 2221, 2329
BssECI	CCNNGG	1 cut(s)	296
Bst2UI	CCWGG	3 cut(s)	298, 1023, 2313
Bst4CI	ACNGT	5 cut(s)	130, 187, 437, 1417, 2183
Bst6I	CTCTTC	4 cut(s)	338, 423, 501, 1107
BstAUI	TGTACA	1 cut(s)	2255
BstBAI	YACGTR	1 cut(s)	1844
BstC8I	GCNNGC	2 cut(s)	55, 2381
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	4 cut(s)	1153, 1186, 1584, 2344
BstFNI	CGCG	1 cut(s)	981
BstH2I	RGCGCY	1 cut(s)	1819
BstHHI	GCGC	4 cut(s)	336, 1062, 1738, 1818
BstMAI	GTCTC	4 cut(s)	327, 375, 725, 1712
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 1299, 1343, 1601, 1646
BstNI	CCWGG	3 cut(s)	298, 1023, 2313
BstNSI	RCATGY	4 cut(s)	865, 1567, 1697, 1866
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	296, 1021, 2311
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	1304
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	5 cut(s)	25, 1074, 1196, 1613, 2033
BstV2I	GAAGAC	5 cut(s)	298, 837, 911, 1704, 2327
BstX2I	RGATCY	2 cut(s)	1287, 1496
BstYI	RGATCY	2 cut(s)	1287, 1496
Bsu36I	CCTNAGG	1 cut(s)	2136
BtsCI	GGATG	4 cut(s)	1153, 1186, 1584, 2344
BtsI	GCAGTG	2 cut(s)	21, 48
BtsIMutI	CAGTG	5 cut(s)	21, 48, 1779, 2067, 2188
BveI	ACCTGC	1 cut(s)	1097
Cac8I	GCNNGC	2 cut(s)	55, 2381
CaiI	CAGNNNCTG	1 cut(s)	1169
CfoI	GCGC	4 cut(s)	336, 1062, 1738, 1818
CseI	GACGC	2 cut(s)	88, 1996
Csp6I	GTAC	6 cut(s)	718, 878, 1555, 1561, 1860, 2256
CviQI	GTAC	6 cut(s)	718, 878, 1555, 1561, 1860, 2256
DraI	TTTAAA	1 cut(s)	2391
DraIII	CACNNNGTG	1 cut(s)	2273
Eam1104I	CTCTTC	4 cut(s)	338, 423, 501, 1107
EarI	CTCTTC	4 cut(s)	338, 423, 501, 1107
Eco31I	GGTCTC	3 cut(s)	327, 375, 1712
Eco32I	GATATC	2 cut(s)	807, 1983
Eco57I	CTGAAG	4 cut(s)	525, 626, 1589, 1677
Eco72I	CACGTG	1 cut(s)	1844
Eco81I	CCTNAGG	1 cut(s)	2136
Eco91I	GGTNACC	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	296, 1021, 2311
EcoRV	GATATC	2 cut(s)	807, 1983
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	2 cut(s)	925, 1030
FbaI	TGATCA	4 cut(s)	1036, 1249, 1546, 1836
FblI	GTMKAC	1 cut(s)	1384
Fnu4HI	GCNGC	5 cut(s)	39, 1063, 1185, 1602, 2022
FokI	GGATG	4 cut(s)	1160, 1193, 1591, 2331
Fsp4HI	GCNGC	5 cut(s)	39, 1063, 1185, 1602, 2022
FspBI	CTAG	8 cut(s)	738, 779, 837, 1053, 1991, 2018, 2096, 2204
FspI	TGCGCA	2 cut(s)	335, 1061
GlaI	GCGC	4 cut(s)	335, 1061, 1737, 1817
GluI	GCNGC	5 cut(s)	39, 1063, 1185, 1602, 2022
GsaI	CCCAGC	1 cut(s)	2352
GsuI	CTGGAG	2 cut(s)	219, 2247
HaeII	RGCGCY	1 cut(s)	1819
HgaI	GACGC	2 cut(s)	88, 1996
HhaI	GCGC	4 cut(s)	336, 1062, 1738, 1818
Hin6I	GCGC	4 cut(s)	334, 1060, 1736, 1816
HinP1I	GCGC	4 cut(s)	334, 1060, 1736, 1816
HinfI	GANTC	9 cut(s)	266, 444, 601, 1125, 1406, 1466, 1507, 1766, 2328
HphI	GGTGA	4 cut(s)	97, 361, 1121, 2227
Hpy166II	GTNNAC	4 cut(s)	649, 1351, 1385, 2256
Hpy8I	GTNNAC	4 cut(s)	649, 1351, 1385, 2256
HpyAV	CCTTC	5 cut(s)	61, 346, 556, 601, 1450
HpyCH4III	ACNGT	5 cut(s)	130, 187, 437, 1417, 2183
HpyCH4IV	ACGT	3 cut(s)	1277, 1843, 2059
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 1299, 1343, 1601, 1646
HpySE526I	ACGT	3 cut(s)	1277, 1843, 2059
HspAI	GCGC	4 cut(s)	334, 1060, 1736, 1816
Ksp22I	TGATCA	4 cut(s)	1036, 1249, 1546, 1836
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	3 cut(s)	300, 1798, 2266
Lsp1109I	GCAGC	5 cut(s)	25, 1074, 1196, 1613, 2033
LweI	GCATC	4 cut(s)	415, 772, 1171, 1569
MaeI	CTAG	8 cut(s)	738, 779, 837, 1053, 1991, 2018, 2096, 2204
MaeII	ACGT	3 cut(s)	1277, 1843, 2059
MaeIII	GTNAC	4 cut(s)	680, 1278, 1777, 2223
MbiI	CCGCTC	1 cut(s)	303
MfeI	CAATTG	1 cut(s)	2236
MflI	RGATCY	2 cut(s)	1287, 1496
MhlI	GDGCHC	1 cut(s)	1304
MlyI	GAGTC	4 cut(s)	438, 1134, 1516, 1760
MroXI	GAANNNNTTC	1 cut(s)	417
MslI	CAYNNNNRTG	3 cut(s)	279, 873, 2446
MspA1I	CMGCKG	1 cut(s)	1065
MspR9I	CCNGG	3 cut(s)	298, 1023, 2313
MunI	CAATTG	1 cut(s)	2236
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	3 cut(s)	298, 1023, 2313
MvnI	CGCG	1 cut(s)	981
MwoI	GCNNNNNNNGC	5 cut(s)	79, 1299, 1343, 1601, 1646
NlaIV	GGNNCC	3 cut(s)	1079, 1289, 1303
NmuCI	GTSAC	3 cut(s)	1278, 1777, 2223
NsbI	TGCGCA	2 cut(s)	335, 1061
NspI	RCATGY	4 cut(s)	865, 1567, 1697, 1866
PaqCI	CACCTGC	1 cut(s)	1097
PciSI	GCTCTTC	1 cut(s)	501
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	5 cut(s)	266, 601, 1406, 1466, 2328
PflFI	GACNNNGTC	1 cut(s)	1769
PflMI	CCANNNNNTGG	1 cut(s)	1751
PkrI	GCNGC	5 cut(s)	40, 1064, 1186, 1603, 2023
PleI	GAGTC	4 cut(s)	438, 1133, 1515, 1760
PmaCI	CACGTG	1 cut(s)	1844
PmlI	CACGTG	1 cut(s)	1844
PpsI	GAGTC	4 cut(s)	438, 1133, 1515, 1760
Ppu21I	YACGTR	1 cut(s)	1844
PshBI	ATTAAT	2 cut(s)	210, 950
Psp1406I	AACGTT	1 cut(s)	2059
Psp6I	CCWGG	3 cut(s)	296, 1021, 2311
PspCI	CACGTG	1 cut(s)	1844
PspEI	GGTNACC	1 cut(s)	680
PspFI	CCCAGC	1 cut(s)	2348
PspGI	CCWGG	3 cut(s)	296, 1021, 2311
PspN4I	GGNNCC	3 cut(s)	1079, 1289, 1303
PsrI	GAACNNNNNNTAC	2 cut(s)	1635, 1667
PstNI	CAGNNNCTG	1 cut(s)	1169
PsuI	RGATCY	2 cut(s)	1287, 1496
PsyI	GACNNNGTC	1 cut(s)	1769
PvuII	CAGCTG	1 cut(s)	1065
RsaI	GTAC	6 cut(s)	719, 879, 1556, 1562, 1861, 2257
RsaNI	GTAC	6 cut(s)	718, 878, 1555, 1561, 1860, 2256
RseI	CAYNNNNRTG	3 cut(s)	279, 873, 2446
SapI	GCTCTTC	1 cut(s)	501
SatI	GCNGC	5 cut(s)	39, 1063, 1185, 1602, 2022
SchI	GAGTC	4 cut(s)	438, 1134, 1516, 1760
ScrFI	CCNGG	3 cut(s)	298, 1023, 2313
SduI	GDGCHC	1 cut(s)	1304
SfaNI	GCATC	4 cut(s)	415, 772, 1171, 1569
SfcI	CTRYAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	3 cut(s)	279, 873, 2446
SmlI	CTYRAG	2 cut(s)	314, 2332
SmoI	CTYRAG	2 cut(s)	314, 2332
SsiI	CCGC	4 cut(s)	303, 979, 1291, 1722
SspI	AATATT	2 cut(s)	457, 958
SspMI	CTAG	8 cut(s)	738, 779, 837, 1053, 1991, 2018, 2096, 2204
StyD4I	CCNGG	3 cut(s)	296, 1021, 2311
TaaI	ACNGT	5 cut(s)	130, 187, 437, 1417, 2183
TaiI	ACGT	3 cut(s)	1280, 1846, 2062
TaqI	TCGA	5 cut(s)	92, 122, 379, 1902, 2145
TatI	WGTACW	4 cut(s)	717, 877, 1560, 2255
TfiI	GAWTC	5 cut(s)	266, 601, 1406, 1466, 2328
TscAI	CASTG	5 cut(s)	28, 55, 1786, 2074, 2188
TseFI	GTSAC	3 cut(s)	1278, 1777, 2223
TseI	GCWGC	5 cut(s)	38, 1062, 1184, 1601, 2021
Tsp45I	GTSAC	3 cut(s)	1278, 1777, 2223
TspGWI	ACGGA	2 cut(s)	1514, 2377
TspRI	CASTG	5 cut(s)	28, 55, 1786, 2074, 2188
Tth111I	GACNNNGTC	1 cut(s)	1769
Van91I	CCANNNNNTGG	1 cut(s)	1751
VspI	ATTAAT	2 cut(s)	210, 950
XapI	RAATTY	8 cut(s)	523, 883, 983, 1213, 1512, 1682, 2306, 2395
XceI	RCATGY	4 cut(s)	865, 1567, 1697, 1866
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 460
XmiI	GTMKAC	1 cut(s)	1384
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	8 cut(s)	738, 779, 837, 1053, 1991, 2018, 2096, 2204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.