Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008364

Physical Location & Seq

Genomic Coordinates Forward (+)

6498970 .. 6499938

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0039700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAATGCTATTCCTACTCCCCTTTCGTTCTCATAAACACAATTTTCCATCCATTGCAATCGTGTTATTTGAATTCCTCCAGCTATTGGTTGCAGTTGTGAGTAGGAATGAAGGAGCACAGGTTAAAGATGACACCGCAAAAGCTGAGGCCCCAACATTTTCTCAAGCCATTAAGAATGCAGATAAGACGAACCCCATCGAAGATGTTGAGGTGATTAGGATACAATCAACAAGGAGTAAGGCTCATCTCCAGGAAGTATCTAAACACTACAAGGAGATTTCTGGCCACAACATCGATGAGGATCTTGATGCTGATTTTGAGGTTAAAAGAGACGGTGCAGTGCCTATGTACTCAGACATATTTCAGCAAGGTGTTGAAAGTGGCATTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010467 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

5.06

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	56 - 107	2.1e-08	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74350
fragaria_vesca	FvH4_7g02870
malus_domestica	MD02G1287300.v1.1
prunus_persica	Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1
pyrus_communis	pycom02g24350
rosa_chinensis	RchiOBHm_Chr1g0323821
rosa_laevigata	RLG00000030266
rosa_roxburghii	Rroxscaffold_4G00326400
rosa_rugosa	Rorug01G0039700
rosa_samantha	Rh1AG057100 Rh1BG048100 Rh1DG062200
rosa_wichuraiana	Rw1G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	74, 380
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	85, 146
AluI	AGCT	2 cut(s)	85, 146
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	150, 286
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	58, 206
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	2 cut(s)	65, 236
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse3DI	GCAATG	2 cut(s)	12, 54
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	12, 54
BseMII	CTCAG	2 cut(s)	138, 369
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	152, 288
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	152, 288
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	152, 288
BspCNI	CTCAG	2 cut(s)	139, 368
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	12, 54
BssMI	GATC	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	147, 355
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	152, 288
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	352
CviJI	RGCY	6 cut(s)	85, 146, 152, 170, 245, 288
CviKI_1	RGCY	6 cut(s)	85, 146, 152, 170, 245, 288
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	147, 355
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	327
FaiI	YATR	3 cut(s)	36, 350, 362
FokI	GGATG	1 cut(s)	37
GsuI	CTGGAG	2 cut(s)	65, 236
HaeIII	GGCC	2 cut(s)	152, 288
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	59, 95, 182, 341
HpyF3I	CTNAG	2 cut(s)	147, 355
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	95, 107, 239, 266, 270
LweI	GCATC	1 cut(s)	301
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	2 cut(s)	43, 74
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	6 cut(s)	89, 142, 205, 295, 316, 385
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	126, 174, 327
Msp20I	TGGCCA	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	254
NdeII	GATC	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	153
PctI	GAATGC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	126, 174, 327
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	6 cut(s)	87, 126, 148, 216, 327, 376
SfaNI	GCATC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	43, 74
SsiI	CCGC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	201, 297
TasI	AATT	2 cut(s)	43, 74
TatI	WGTACW	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	126, 174, 327
Tru9I	TTAA	3 cut(s)	126, 174, 327
TscAI	CASTG	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.