Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008364

Physical Location & Seq

Genomic Coordinates Reverse (-)

9329492 .. 9333224

Gene Structure 3733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2583 bp

ATGGGTCGTGGAATATCAGCCGTTGGAAAAGCAAGCAGCTTTGGCAGTGCTTCTGGGAAAAGCACCTCCCAGATTAATCATCAAGGGTTCGAAGCCTATATCCAGTATCAACTTAGCAGCAACCCAATTTCTATGTCTTATGACAAAAGGCTCACTGCTGTCAGAAAAGCTGCCTCTCTCACTGCTCGCCTTTGTGAAAAGGTGCAAAAGACACTGGTGAAGTCGAACACTTCTTCAAAATCAGATAAAAGTCCCATCACAGTGGCCCATCATGGAAGAGCTTGCGAAAGAATACAAGAATTTGCAGATCATTCTACTGTCTCTACTGCTGGAGATGATATTAATAACAGCATTTGTAAAATGAAATTGGCAGAGAACTTAGCCTGGCTTGTTGATGAATCTTCTCATATGGATGAGAGAGGAAGACCCAGGAGCAGAATGGAACTCAAGAGGTCTGTTGAACTGCGCATTAAGAAGAGGGTGAAGGAACAATACCTCAATGGGAAGTTTAGAGACCTAATGGCAAAAGTCATTGCCAATCCAGAAACTCTTCAAGATGCTTATGATTGTATCAGACTCAACTCCAATATTGATGTAGTGTTAAATGATGAGAAAACTTCTTTTGGTTCTTTGGCTGAAGAGCTGTATCTTGGGAATTTTGATGTTAATGCTAATACCTTCTCTATCTCAACAAAGAATGCAAGGAAAGATGTTTTAGTGCTTCCCAATGTGAATCTGAAGGTCATTCAGGAAGCCATCAGAATTGTATTAGAAGTTGTTTACAAGCCCCACTTCTCTAAAATTTCACATGGTTACCGAAGTGGGAGGGGGCATTCTACAGCTTTGAAGTACATAAGCAAGGAGACTGCTAGTTCTGATTGGTGGTTTATATTGCTCATTAGCAAAAAGCTAGATGCTTGTATTCTTGCTAAACTGATATCAGTAATGGAGGAGAAGATAGAAGACCCTAGCCTCTATGGTATGATCCAAAGCATGTTTCACGCTAATGTACTCAATTTCGAGTTTGGTGGTTTCCCAAAATGTCATGGTCTTCCACAGGAGGGAGTATTGTCCCCTATATTAATGAATATTTATCTTGACCTATTTGACCGCGAGTTTTACAGATTATCAATGAAGTATGAAGCTCTCATTCCAGGTTTACATACTGATCAAAAGTCCCAGTCTAGGTTGCGCAGCTGGTTTAGGAGGAACTTGAAAGGTAATGATCTTGGCTGTGTAGGTGAAGAGAGTTTTAGAGTCCATTCTTGTCGCTTCATGGATGAGATATTCTTTTCAGTTGCTGGTTCTAAGGATGCAGCTCTTGATTTCAAATCTGAGGTTCAAAATTACTTGCAGAAGTCTTTGCACTTGGAAGTTGATGATCAAACAGAATTATTGCCATGTCAAATGTCTCAGGGGATCCGCTTTTTAGGCACCTTGATTAGAAGAAATGTGAAAGAAAGTCCTGCGACAAAAGCAGTCCACAAGTTAAAGGAAAAAGTTGCTTTATTTGGTCTACAAAAGCAAGAGGCATGGGATTCTGGAACAGTTAGCATAGGCAAGAAATGGTTGGGTCATGCTTTGAAGAAGGTCAAGGAATCAGAGATCAAGCATTTAGCTGACAGCAGGTCTGTTCTGAGTCAAATTTCCCATTGCCGTAAATCTGGTATGGAAACTGATCATTGGTACAAGTACATGCTGAAGATTTGGATGCAAGATGTCAAAGCCAAAGCAGAAGAGAGCGAGGAAGCTATCCTGTCTAAGTATGTCGCAGAACCAGCTTTACCTGAAGAACTAAGAAACTCCTTTTATGAATTTCAGAGGCATGTGGAAAAATATGTTTCTTCTGAGACCACTTCTACTCTTGCCCTTTTACCAAATGCTGGTTCTTCTACTGACTCTGTCATTGTCACTGAGATAATTGCTCCCGTTATTGCAATAAAAAAGCGTCTCCTACGATATGGATTGCTCACACGTGATGGTTACCCCCGTACATGCTCCTTGCTTGTTTTACAAGATAATGTTCAAATTATTGACTGGTTTTCAGGTATTGTTCGCCGTTGGCTTAGATGGTATGCCAAGTGTGATAACTTCAATGAGGTAAAGTTCTTGATATCTGATCTAGTAAGAAAATCCTGCATCCGAACTCTAGCAGCAAAGTATCGTGTGCATGAAGCTGAGATAGAAAAACGTTTTGACACTGAACTAAGCAGTATTCCCTCTACCCTAGAAGTTGAGCAAGAGATGGTAAGTGAAACATCAGACCCTCAGGCTTTAGAGAACGATGAGGCTTTAATGTATGGAATTTCTTACAGTGGCTTATGTTTGCTCTCTCTAGCAAGAATGGTGAGCCAGTCACGACCTTGCAATTGTTTTGTCATTGGGTGTACAGCTCCAGCACCGAGTGTCTATACTATTCATGTAATGGAAAGGCAAAAATTTCCTGGCTGGAAGACTGGGTTCTCAAGTTGTATTCATCCCAGCTTGAATAGACGGAGAATAGGGTTGTGCAAGCAACACTTAAAGAATTTGTATCTTGGTCATATATCACTTCAATCCATTGATTTTGGGGCATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010467 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

860

Amino Acids

97.53

Weight (kDa)

9.0

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	239 - 458	4.4e-09	Reverse transcriptase (RNA-dependent DNA polymerase)
Intron_maturas2	PF01348	640 - 748	9.5e-10	Type II intron maturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74350
fragaria_vesca	FvH4_7g02870
malus_domestica	MD02G1287300.v1.1
prunus_persica	Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1 Prupe.2G034000_v2.0.a1
pyrus_communis	pycom02g24350
rosa_chinensis	RchiOBHm_Chr1g0323821
rosa_laevigata	RLG00000030266
rosa_roxburghii	Rroxscaffold_4G00326400
rosa_rugosa	Rorug01G0039700
rosa_samantha	Rh1AG057100 Rh1BG048100 Rh1DG062200
rosa_wichuraiana	Rw1G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	467, 1193
Acc36I	ACCTGC	1 cut(s)	1617
AccB1I	GGYRCC	1 cut(s)	1433
AccB7I	CCANNNNNTGG	1 cut(s)	1883
AccI	GTMKAC	1 cut(s)	1516
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	2 cut(s)	1111, 1423
AclI	AACGTT	1 cut(s)	2191
AclWI	GGATC	3 cut(s)	979, 1414, 1427
AcsI	RAATTY	8 cut(s)	299, 655, 801, 1644, 1814, 2304, 2438, 2527
AcuI	CTGAAG	4 cut(s)	657, 758, 1721, 1809
AcvI	CACGTG	1 cut(s)	1976
AdeI	CACNNNGTG	1 cut(s)	2405
AfaI	GTAC	6 cut(s)	851, 1011, 1688, 1694, 1993, 2389
AfiI	CCNNNNNNNGG	3 cut(s)	1061, 1185, 1883
AflIII	ACRYGT	1 cut(s)	1973
AhdI	GACNNNNNGTC	1 cut(s)	1627
AjnI	CCWGG	4 cut(s)	383, 428, 1153, 2443
AjuI	GAANNNNNNNTTGG	4 cut(s)	981, 1013, 1870, 1902
Alw26I	GTCTC	6 cut(s)	325, 507, 857, 1416, 1844, 1955
AlwI	GGATC	3 cut(s)	979, 1414, 1427
AlwNI	CAGNNNCTG	1 cut(s)	1301
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	6 cut(s)	36, 117, 170, 1194, 1316, 2153
ApoI	RAATTY	8 cut(s)	299, 655, 801, 1644, 1814, 2304, 2438, 2527
AseI	ATTAAT	3 cut(s)	75, 342, 1082
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	468, 1194
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	229, 493, 1253, 2359
AsuII	TTCGAA	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	2268
BamHI	GGATCC	1 cut(s)	1419
BanI	GGYRCC	1 cut(s)	1433
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbrPI	CACGTG	1 cut(s)	1976
BbsI	GAAGAC	4 cut(s)	430, 969, 1043, 2459
BbvI	GCAGC	6 cut(s)	48, 129, 157, 1206, 1328, 2165
BccI	CCATC	6 cut(s)	263, 276, 764, 1973, 2064, 2239
BceAI	ACGGC	3 cut(s)	5, 1641, 2043
BciT130I	CCWGG	4 cut(s)	385, 430, 1155, 2445
BclI	TGATCA	3 cut(s)	1168, 1381, 1678
BcoDI	GTCTC	6 cut(s)	325, 507, 857, 1416, 1844, 1955
BfaI	CTAG	8 cut(s)	870, 911, 969, 1185, 2123, 2150, 2228, 2336
BfmI	CTRYAG	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	1617
BisI	GCNGC	6 cut(s)	37, 118, 171, 1195, 1317, 2154
BlsI	GCNGC	6 cut(s)	38, 119, 172, 1196, 1318, 2155
Bme1390I	CCNGG	4 cut(s)	385, 430, 1155, 2445
BmeRI	GACNNNNNGTC	1 cut(s)	1627
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	1421, 1435
BmrFI	CCNGG	4 cut(s)	385, 430, 1155, 2445
BmrI	ACTGGG	2 cut(s)	1174, 2466
BmsI	GCATC	5 cut(s)	547, 904, 1303, 1701, 2148
BmuI	ACTGGG	2 cut(s)	1174, 2466
BpiI	GAAGAC	4 cut(s)	430, 969, 1043, 2459
BpmI	CTGGAG	2 cut(s)	351, 2379
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	431, 2449
BsaAI	YACGTR	1 cut(s)	1976
BsaI	GGTCTC	2 cut(s)	507, 1844
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	3 cut(s)	1061, 1185, 1883
Bse1I	ACTGG	6 cut(s)	103, 219, 1180, 2042, 2353, 2461
Bse21I	CCTNAGG	1 cut(s)	2268
Bse3DI	GCAATG	2 cut(s)	531, 1651
BseBI	CCWGG	4 cut(s)	385, 430, 1155, 2445
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	6 cut(s)	418, 1285, 1318, 1716, 2139, 2476
BseLI	CCNNNNNNNGG	3 cut(s)	1061, 1185, 1883
BseMI	GCAATG	2 cut(s)	531, 1651
BseMII	CTCAG	7 cut(s)	1326, 1427, 1628, 1839, 1905, 2169, 2282
BseNI	ACTGG	6 cut(s)	103, 219, 1180, 2042, 2353, 2461
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	6 cut(s)	48, 129, 157, 1206, 1328, 2165
BseYI	CCCAGC	1 cut(s)	2480
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	1433
BslFI	GGGAC	3 cut(s)	237, 1057, 1162
BslI	CCNNNNNNNGG	3 cut(s)	1061, 1185, 1883
BsmAI	GTCTC	6 cut(s)	325, 507, 857, 1416, 1844, 1955
BsmBI	CGTCTC	1 cut(s)	1955
BsmFI	GGGAC	3 cut(s)	237, 1057, 1162
BsmI	GAATGC	2 cut(s)	703, 832
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	2 cut(s)	507, 1844
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	2387
Bsp143I	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
BspACI	CCGC	2 cut(s)	1111, 1423
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	7 cut(s)	1327, 1426, 1629, 1840, 1906, 2170, 2281
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	2 cut(s)	1421, 1435
BspMI	ACCTGC	1 cut(s)	1617
BspPI	GGATC	3 cut(s)	979, 1414, 1427
BspQI	GCTCTTC	2 cut(s)	271, 633
BspT104I	TTCGAA	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	1433
BspTNI	GGTCTC	2 cut(s)	507, 1844
BsrDI	GCAATG	2 cut(s)	531, 1651
BsrGI	TGTACA	1 cut(s)	2387
BsrI	ACTGG	6 cut(s)	103, 219, 1180, 2042, 2353, 2461
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
Bst2UI	CCWGG	4 cut(s)	385, 430, 1155, 2445
Bst4CI	ACNGT	4 cut(s)	262, 319, 1549, 2315
Bst6I	CTCTTC	6 cut(s)	271, 470, 555, 633, 1239, 1731
BstAUI	TGTACA	1 cut(s)	2387
BstBAI	YACGTR	1 cut(s)	1976
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	34, 187, 283, 2513
BstEII	GGTNACC	2 cut(s)	812, 1982
BstF5I	GGATG	6 cut(s)	418, 1285, 1318, 1716, 2139, 2476
BstFNI	CGCG	1 cut(s)	1113
BstHHI	GCGC	2 cut(s)	468, 1194
BstKTI	GATC	9 cut(s)	310, 987, 1171, 1228, 1384, 1422, 1608, 1681, 2122
BstMAI	GTCTC	6 cut(s)	325, 507, 857, 1416, 1844, 1955
BstMBI	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 1431, 1475, 1778
BstNI	CCWGG	4 cut(s)	385, 430, 1155, 2445
BstNSI	RCATGY	4 cut(s)	997, 1699, 1829, 1998
BstPI	GGTNACC	2 cut(s)	812, 1982
BstSCI	CCNGG	4 cut(s)	383, 428, 1153, 2443
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	6 cut(s)	48, 129, 157, 1206, 1328, 2165
BstV2I	GAAGAC	4 cut(s)	430, 969, 1043, 2459
BstX2I	RGATCY	1 cut(s)	1419
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	1419
Bsu36I	CCTNAGG	1 cut(s)	2268
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	6 cut(s)	418, 1285, 1318, 1716, 2139, 2476
BtsI	GCAGTG	3 cut(s)	52, 153, 180
BtsIMutI	CAGTG	8 cut(s)	52, 153, 180, 212, 267, 1911, 2199, 2320
BveI	ACCTGC	1 cut(s)	1617
Cac8I	GCNNGC	4 cut(s)	34, 187, 283, 2513
CaiI	CAGNNNCTG	1 cut(s)	1301
CfoI	GCGC	2 cut(s)	468, 1194
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	1937
Csp6I	GTAC	6 cut(s)	850, 1010, 1687, 1693, 1992, 2388
CviQI	GTAC	6 cut(s)	850, 1010, 1687, 1693, 1992, 2388
DpnI	GATC	9 cut(s)	309, 986, 1170, 1227, 1383, 1421, 1607, 1680, 2121
DpnII	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
DraIII	CACNNNGTG	1 cut(s)	2405
DriI	GACNNNNNGTC	1 cut(s)	1627
Eam1104I	CTCTTC	6 cut(s)	271, 470, 555, 633, 1239, 1731
Eam1105I	GACNNNNNGTC	1 cut(s)	1627
EarI	CTCTTC	6 cut(s)	271, 470, 555, 633, 1239, 1731
Eco31I	GGTCTC	2 cut(s)	507, 1844
Eco32I	GATATC	2 cut(s)	939, 2115
Eco57I	CTGAAG	4 cut(s)	657, 758, 1721, 1809
Eco72I	CACGTG	1 cut(s)	1976
Eco81I	CCTNAGG	1 cut(s)	2268
Eco91I	GGTNACC	2 cut(s)	812, 1982
EcoO65I	GGTNACC	2 cut(s)	812, 1982
EcoRII	CCWGG	4 cut(s)	383, 428, 1153, 2443
EcoRV	GATATC	2 cut(s)	939, 2115
Esp3I	CGTCTC	1 cut(s)	1955
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 2504, 2536
FaqI	GGGAC	3 cut(s)	237, 1057, 1162
FauNDI	CATATG	1 cut(s)	408
FbaI	TGATCA	3 cut(s)	1168, 1381, 1678
FblI	GTMKAC	1 cut(s)	1516
Fnu4HI	GCNGC	6 cut(s)	37, 118, 171, 1195, 1317, 2154
FokI	GGATG	6 cut(s)	425, 1292, 1325, 1723, 2126, 2463
Fsp4HI	GCNGC	6 cut(s)	37, 118, 171, 1195, 1317, 2154
FspBI	CTAG	8 cut(s)	870, 911, 969, 1185, 2123, 2150, 2228, 2336
FspI	TGCGCA	2 cut(s)	467, 1193
GlaI	GCGC	2 cut(s)	467, 1193
GluI	GCNGC	6 cut(s)	37, 118, 171, 1195, 1317, 2154
GsaI	CCCAGC	1 cut(s)	2484
GsuI	CTGGAG	2 cut(s)	351, 2379
HaeIII	GGCC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	1937
HhaI	GCGC	2 cut(s)	468, 1194
Hin6I	GCGC	2 cut(s)	466, 1192
HinP1I	GCGC	2 cut(s)	466, 1192
HinfI	GANTC	8 cut(s)	398, 576, 733, 1257, 1538, 1598, 1639, 1898
HphI	GGTGA	4 cut(s)	229, 493, 1253, 2359
Hpy166II	GTNNAC	5 cut(s)	781, 1160, 1483, 1517, 2388
Hpy188III	TCNNGA	9 cut(s)	448, 542, 554, 749, 1097, 1322, 1542, 2110, 2358
Hpy8I	GTNNAC	5 cut(s)	781, 1160, 1483, 1517, 2388
HpyAV	CCTTC	4 cut(s)	478, 688, 733, 1582
HpyCH4III	ACNGT	4 cut(s)	262, 319, 1549, 2315
HpyCH4IV	ACGT	2 cut(s)	1975, 2191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 1431, 1475, 1778
HpySE526I	ACGT	2 cut(s)	1975, 2191
HspAI	GCGC	2 cut(s)	466, 1192
Ksp22I	TGATCA	3 cut(s)	1168, 1381, 1678
Kzo9I	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
LguI	GCTCTTC	2 cut(s)	271, 633
LmnI	GCTCC	4 cut(s)	432, 1930, 2003, 2398
Lsp1109I	GCAGC	6 cut(s)	48, 129, 157, 1206, 1328, 2165
LweI	GCATC	5 cut(s)	547, 904, 1303, 1701, 2148
MaeI	CTAG	8 cut(s)	870, 911, 969, 1185, 2123, 2150, 2228, 2336
MaeII	ACGT	2 cut(s)	1975, 2191
MaeIII	GTNAC	4 cut(s)	812, 1909, 1982, 2355
MalI	GATC	9 cut(s)	309, 986, 1170, 1227, 1383, 1421, 1607, 1680, 2121
MboI	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
MfeI	CAATTG	1 cut(s)	2368
MflI	RGATCY	1 cut(s)	1419
MlyI	GAGTC	4 cut(s)	570, 1266, 1648, 1892
MmeI	TCCRAC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	9 cut(s)	75, 342, 471, 602, 666, 1082, 1490, 2294, 2522
MslI	CAYNNNNRTG	4 cut(s)	260, 411, 1005, 2578
MspA1I	CMGCKG	1 cut(s)	1197
MspR9I	CCNGG	4 cut(s)	385, 430, 1155, 2445
MunI	CAATTG	1 cut(s)	2368
Mva1269I	GAATGC	2 cut(s)	703, 832
MvaI	CCWGG	4 cut(s)	385, 430, 1155, 2445
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	4 cut(s)	42, 1431, 1475, 1778
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
NlaIV	GGNNCC	2 cut(s)	1421, 1435
NmuCI	GTSAC	2 cut(s)	1909, 2355
NsbI	TGCGCA	2 cut(s)	467, 1193
NspI	RCATGY	4 cut(s)	997, 1699, 1829, 1998
NspV	TTCGAA	1 cut(s)	90
PciSI	GCTCTTC	2 cut(s)	271, 633
PctI	GAATGC	2 cut(s)	703, 832
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	4 cut(s)	398, 733, 1538, 1598
PflFI	GACNNNGTC	1 cut(s)	1901
PflMI	CCANNNNNTGG	1 cut(s)	1883
PkrI	GCNGC	6 cut(s)	38, 119, 172, 1196, 1318, 2155
PleI	GAGTC	4 cut(s)	570, 1265, 1647, 1892
PmaCI	CACGTG	1 cut(s)	1976
PmlI	CACGTG	1 cut(s)	1976
PpsI	GAGTC	4 cut(s)	570, 1265, 1647, 1892
Ppu21I	YACGTR	1 cut(s)	1976
PshBI	ATTAAT	3 cut(s)	75, 342, 1082
Psp1406I	AACGTT	1 cut(s)	2191
Psp6I	CCWGG	4 cut(s)	383, 428, 1153, 2443
PspCI	CACGTG	1 cut(s)	1976
PspEI	GGTNACC	2 cut(s)	812, 1982
PspFI	CCCAGC	1 cut(s)	2480
PspGI	CCWGG	4 cut(s)	383, 428, 1153, 2443
PspN4I	GGNNCC	2 cut(s)	1421, 1435
PspPI	GGNCC	1 cut(s)	265
PsrI	GAACNNNNNNTAC	2 cut(s)	1767, 1799
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	1 cut(s)	1419
PsyI	GACNNNGTC	1 cut(s)	1901
PvuII	CAGCTG	1 cut(s)	1197
RsaI	GTAC	6 cut(s)	851, 1011, 1688, 1694, 1993, 2389
RsaNI	GTAC	6 cut(s)	850, 1010, 1687, 1693, 1992, 2388
RseI	CAYNNNNRTG	4 cut(s)	260, 411, 1005, 2578
SapI	GCTCTTC	2 cut(s)	271, 633
SaqAI	TTAA	9 cut(s)	75, 342, 471, 602, 666, 1082, 1490, 2294, 2522
SatI	GCNGC	6 cut(s)	37, 118, 171, 1195, 1317, 2154
Sau3AI	GATC	9 cut(s)	307, 984, 1168, 1225, 1381, 1419, 1605, 1678, 2119
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	4 cut(s)	570, 1266, 1648, 1892
ScrFI	CCNGG	4 cut(s)	385, 430, 1155, 2445
SfaNI	GCATC	5 cut(s)	547, 904, 1303, 1701, 2148
SfcI	CTRYAG	1 cut(s)	837
SfuI	TTCGAA	1 cut(s)	90
SmiMI	CAYNNNNRTG	4 cut(s)	260, 411, 1005, 2578
SmlI	CTYRAG	2 cut(s)	446, 2464
SmoI	CTYRAG	2 cut(s)	446, 2464
SsiI	CCGC	2 cut(s)	1111, 1423
SspI	AATATT	2 cut(s)	589, 1090
SspMI	CTAG	8 cut(s)	870, 911, 969, 1185, 2123, 2150, 2228, 2336
StyD4I	CCNGG	4 cut(s)	383, 428, 1153, 2443
TaaI	ACNGT	4 cut(s)	262, 319, 1549, 2315
TaiI	ACGT	2 cut(s)	1978, 2194
TaqI	TCGA	3 cut(s)	90, 224, 1020
TatI	WGTACW	4 cut(s)	849, 1009, 1692, 2387
TfiI	GAWTC	4 cut(s)	398, 733, 1538, 1598
Tru1I	TTAA	9 cut(s)	75, 342, 471, 602, 666, 1082, 1490, 2294, 2522
Tru9I	TTAA	9 cut(s)	75, 342, 471, 602, 666, 1082, 1490, 2294, 2522
TscAI	CASTG	8 cut(s)	52, 160, 187, 219, 267, 1918, 2206, 2320
TseFI	GTSAC	2 cut(s)	1909, 2355
TseI	GCWGC	6 cut(s)	36, 117, 170, 1194, 1316, 2153
Tsp45I	GTSAC	2 cut(s)	1909, 2355
TspGWI	ACGGA	1 cut(s)	2509
TspRI	CASTG	8 cut(s)	52, 160, 187, 219, 267, 1918, 2206, 2320
Tth111I	GACNNNGTC	1 cut(s)	1901
Van91I	CCANNNNNTGG	1 cut(s)	1883
VspI	ATTAAT	3 cut(s)	75, 342, 1082
XapI	RAATTY	8 cut(s)	299, 655, 801, 1644, 1814, 2304, 2438, 2527
XceI	RCATGY	4 cut(s)	997, 1699, 1829, 1998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	1516
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	8 cut(s)	870, 911, 969, 1185, 2123, 2150, 2228, 2336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.