Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004469

Physical Location & Seq

Genomic Coordinates Forward (+)

62170674 .. 62184291

Gene Structure 13618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGGATGATGAAGTTGTGCAGCGAGTTTTCCAAGAAGGAGGGCGCGACTATTTCCAACAGCAACCCTCCACTTCGTCTTCGTCTTCCTCTATTCTCCAATCACTTCCTCTCCATGTGTCTTTTGATCGCGGGTATTATTTGTTGGTAAAATCTATCCAAGAGCTTAGAGAGAAAAAAGAGGGCCTTGTTACAGTTGGCATTGGTGGTCCAAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTGTGTCAATGGAGAACTATCGTGATGGGATTGATGAAGGAAACGATCTCGGTTCAATAGATTTTGATACGCTGGTCCGAAATCTTGAGGATTTGGCAAAGGGTGAAGATACATTGGCTCCAGTTTTTGACTATCAAGAAAAGAAACGCGTTGGTTCAACAACAATACAGAGTGCGTCATCTGGAGTGGTAATAGTTGATGGCACCTATGCTTTGCATGCAAAATTACGCTCTTTGCTGGATATTCGAGTTGCAGTGGTTGGTGGTGTCCATTTCAGCCTTCTTTCCAAAGTTCGATATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGCATTTTCCCATTGTTTAGGAAGCACATCGAACCAGACCTTCATCATGCACAGATTAGGATTAACAACAGCTTTGTCTCATCATTTAGGGAGGCAATCTACAAGCTGAAATGTCGGAGTGAGGCAGCAGAGGGACATTTTGCTAGTGCCTTTCAAGAAAATGTTGCTCAAATAGATAATTTCATTGAGATGTATCTTAGGCCTCCTTCGGCAAGTGAAGAAGCACGGATAAATGATTGGATCAAGGTGCGTCAATCTGGTATAAGATATTATCTGTCACTTGGGGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCAAAAGCAGAGTTTGAGGTTGGAAGGATGACTCTAGGCGGATTACTGGCTTTGGGATACGCTGTGGTTGTTAGCTACAAAAGAGCATCTAAATCAGTCAATAATGGCAATGTTTCATTGTCCCTTGAAACCATTGATAGTCTTGGTGAGACATTCATGGTGCTGAGGGGCACAAATAGAAAAACAGTTGGAACAGAAGCATTGAAGATGGGTATCAGTGAGCCTTGGATCACTAAATCATATCTGGAAATGATTCTTGAGAGCAAAGGCGTACCTCGCCTTAATACACCACCTCTTTTGTCAAATACGCATGTGACCAGTAATCAGGACAGAATGATTGTTGCACCGAAACCAATCCGTGTTCCTCCAAATCTGGTTACTAGGCTTGAGGATCTATCTCAGCCATGGACTAGATCTCCAACAAAATCTACGATGGATCCTATAGTGGCCACCTGGCATTTCATCTCATCAGATCCTTCCCAAGCTGACAGCTCAACCATAGACCACTCTCATAAAGCAACCACAGATCCTTCCTCTTTCAGGGATGGCATGAAATTGGCTCCAATGCCTGATTCATATGACTTAGATAGGGGATTGCTTCTTGCTGTGCAAGCGATACAGGCACTGTTGGAGAATAAAGGTTTTCCGGTTATAGTTGGAATTGGGGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCCAATATAGTTGGCTGTGAAGTTGTTTCCCTTGAAAGATATTACAAATCTGAACAAGTAAAGGATTTCAAGTACGATGACTTCAGCTCGCTCGATCTATCTTTACTTTCAAAAAACATTAATGACATACGGAATGGTCAAAGGACAAAAGTACCCATGTTTGATTTGGAAACTGGTGCTCGGAGTGGGTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATCATTTTTGAAGGAGTTTATGCTTTGCATCCAGATATCCGAAAATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCGCATCTCATTTCTAGAGTTCAAAGGGATAAAGGTAAAGTGGGATGTTTTATGTCCCAGAATGAGATCATGATGACAGTGTTTCCAATGTTCCAACAGTTCATTGAACCCCATCTGGTTCATGCACATCTCAAAATTCGAAATGACTTTGATCCTGTACTTTCTCCGGAGAGCTCATTGTTTTTATTGAAGAGTAACAAGCAAGTGGCTTATCAAGATATTTTAAAAATACTGGATCCTGTAAAGTTCTGCAGCTCTGTACAGAATTTCATTGATTTATACTTGAAACTTCCTGGACTTCCTACCAATGAGCAGTTAACAGAGGGTGACTGCATTCGGGTCAGAATATGTGAGGGCAGATTTGCATTGCTGATACGGGAGCCTATACGAGAAGGGAATTTCATCATCCAACCTAAAGTGGATTTTGATATTAGCATTAGTACAGTTTCTGGGCTTCTTAACCTTGGGTATCAAGCTGTAGCTTATATTGAAGCATCTGCTTTCATCTACCAAGATGGGAAGATTTTGGTTGAGGTTGATCATCTACAAGATGCTCCAAACCCTTACCTGCAAATCAAGGGGGTTGATAAAGATGCCGTGGCAGCTGCAGGGTCATTGCTTAAACTGGATGGTTCATATACTACCAAGAGTTATCTTCAAATAATTCTGGAAAGATTACCAGAACTGGGAAGAGGCTCAGGTGGAATTCACAGTCAGCAAGCTGCAAGATTGCAGGAACTTGTGGAGTTCATTCAGTCTCAGGGCAGCAGTTCAGCTTCGGAATCCTCACCAATTAGGGAGGTTTCTCCGGTTGACGTGGTTATCGAAGATATGCAGTCAAGGATTAGAAGACTTGAGCGGTGGCATACAATCAATACGGTACTATGGACATTTTTAATGTCTGCGCTTGTTGGTTATTCGCTCTACCAAAGGAAGCGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

962

Amino Acids

106.98

Weight (kDa)

6.08

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	65 - 223	5.9e-07	Phosphoribulokinase / Uridine kinase family
PRK	PF00485	527 - 694	2.6e-17	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01460 AT2G01460 AT2G01460
fragaria_vesca	FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570
malus_domestica	MD13G1024500.v1.1 MD16G1027200.v1.1
prunus_persica	Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1
pyrus_communis	pycom16g02300
rosa_chinensis	RchiOBHm_Chr4g0441441
rosa_laevigata	RLG00000006092
rosa_multiflora	Rmu_sc0003360.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382310
rosa_rugosa	Rorug04G0333700
rosa_samantha	Rh4AG385200 Rh4BG399400 Rh4CG414400 Rh4DG392000
rosa_wichuraiana	Rw4G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2520
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	2803
AccII	CGCG	3 cut(s)	45, 129, 417
AccIII	TCCGGA	1 cut(s)	2110
AciI	CCGC	3 cut(s)	129, 966, 2803
AcoI	YGGCCR	2 cut(s)	1374, 1635
AcsI	RAATTY	5 cut(s)	913, 2079, 2209, 2341, 2649
AcuI	CTGAAG	2 cut(s)	1702, 1866
AfaI	GTAC	8 cut(s)	265, 1200, 1709, 1788, 2103, 2205, 2386, 2826
AfiI	CCNNNNNNNGG	2 cut(s)	1467, 2630
AflIII	ACRYGT	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	1616
AjiI	CACGTC	1 cut(s)	2761
AjnI	CCWGG	2 cut(s)	1379, 2236
AjuI	GAANNNNNNNTTGG	2 cut(s)	1483, 1515
Alw21I	GWGCWC	2 cut(s)	1816, 2120
Alw26I	GTCTC	3 cut(s)	688, 1070, 2706
AlwNI	CAGNNNCTG	2 cut(s)	1552, 2393
Aor13HI	TCCGGA	1 cut(s)	2110
AoxI	GGCC	5 cut(s)	181, 806, 926, 1374, 1635
ApeKI	GCWGC	7 cut(s)	19, 731, 2196, 2546, 2549, 2666, 2709
ApoI	RAATTY	5 cut(s)	913, 2079, 2209, 2341, 2649
ArsI	GACNNNNNNTTYG	1 cut(s)	2866
AseI	ATTAAT	1 cut(s)	1755
Asp700I	GAANNNNTTC	1 cut(s)	1179
AspLEI	GCGC	2 cut(s)	45, 2851
AspS9I	GGNCC	5 cut(s)	181, 206, 343, 892, 1595
AsuHPI	GGTGA	4 cut(s)	383, 1085, 2282, 2724
AsuII	TTCGAA	1 cut(s)	2083
AvaII	GGWCC	4 cut(s)	206, 343, 892, 1595
BaeGI	GKGCMC	1 cut(s)	1100
BaeI	ACNNNNGTAYC	4 cut(s)	327, 360, 1770, 1803
BalI	TGGCCA	2 cut(s)	1376, 1637
BamHI	GGATCC	2 cut(s)	1363, 2179
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	2120
BarI	GAAGNNNNNNTAC	2 cut(s)	1700, 1732
BbsI	GAAGAC	3 cut(s)	69, 75, 2800
Bbv12I	GWGCWC	2 cut(s)	1816, 2120
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	7 cut(s)	31, 743, 2208, 2536, 2558, 2653, 2721
BccI	CCATC	8 cut(s)	287, 461, 1129, 1354, 1466, 2064, 2453, 2567
BceAI	ACGGC	1 cut(s)	2525
BciT130I	CCWGG	2 cut(s)	1381, 2238
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	2 cut(s)	1860, 2482
BcoDI	GTCTC	3 cut(s)	688, 1070, 2706
BcuI	ACTAGT	1 cut(s)	1616
BfaI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1617, 1959
BfmI	CTRYAG	4 cut(s)	1368, 2194, 2421, 2550
BfuAI	ACCTGC	1 cut(s)	2520
BfuI	GTATCC	1 cut(s)	977
BglII	AGATCT	1 cut(s)	1340
BisI	GCNGC	7 cut(s)	20, 732, 2197, 2547, 2550, 2667, 2710
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	7 cut(s)	21, 733, 2198, 2548, 2551, 2668, 2711
Bme1390I	CCNGG	2 cut(s)	1381, 2238
Bme18I	GGWCC	4 cut(s)	206, 343, 892, 1595
BmgBI	CACGTC	1 cut(s)	2761
BmgT120I	GGNCC	5 cut(s)	181, 206, 343, 892, 1595
BmiI	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1488, 1596, 2181, 2325
BmrFI	CCNGG	2 cut(s)	1381, 2238
BmrI	ACTGGG	1 cut(s)	2639
BmsI	GCATC	7 cut(s)	257, 1022, 1897, 1957, 2447, 2485, 2527
BmuI	ACTGGG	1 cut(s)	2639
BpiI	GAAGAC	3 cut(s)	69, 75, 2800
BpmI	CTGGAG	2 cut(s)	372, 471
Bpu10I	CCTNAGC	2 cut(s)	1091, 2641
Bpu1102I	GCTNAGC	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	2083
BpuEI	CTTGAG	4 cut(s)	374, 1205, 1334, 2819
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaJI	CCNNGG	4 cut(s)	1151, 1331, 2407, 2541
BsaWI	WCCGGW	3 cut(s)	1573, 2110, 2752
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 370, 400, 1327, 1357
Bsc4I	CCNNNNNNNGG	2 cut(s)	1467, 2630
Bse1I	ACTGG	8 cut(s)	389, 594, 978, 1245, 1813, 2181, 2574, 2634
Bse3DI	GCAATG	3 cut(s)	1042, 2309, 2558
Bse8I	GATNNNNATC	1 cut(s)	1139
BseAI	TCCGGA	1 cut(s)	2110
BseBI	CCWGG	2 cut(s)	1381, 2238
BseDI	CCNNGG	4 cut(s)	1151, 1331, 2407, 2541
BseGI	GGATG	7 cut(s)	10, 960, 1477, 1888, 1994, 2349, 2578
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	2 cut(s)	1467, 2630
BseMI	GCAATG	3 cut(s)	1042, 2309, 2558
BseMII	CTCAG	4 cut(s)	1082, 1340, 2655, 2717
BseNI	ACTGG	8 cut(s)	389, 594, 978, 1245, 1813, 2181, 2574, 2634
BseSI	GKGCMC	1 cut(s)	1100
BseXI	GCAGC	7 cut(s)	31, 743, 2208, 2536, 2558, 2653, 2721
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	3 cut(s)	45, 129, 417
BshFI	GGCC	5 cut(s)	183, 808, 928, 1376, 1637
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	1816, 2120
BsiSI	CCGG	3 cut(s)	1574, 2111, 2753
BslFI	GGGAC	4 cut(s)	753, 905, 1033, 1984
BslI	CCNNNNNNNGG	2 cut(s)	1467, 2630
BsmAI	GTCTC	3 cut(s)	688, 1070, 2706
BsmFI	GGGAC	4 cut(s)	753, 905, 1033, 1984
BsmI	GAATGC	1 cut(s)	2277
BsnI	GGCC	5 cut(s)	183, 808, 928, 1376, 1637
Bsp119I	TTCGAA	1 cut(s)	2083
Bsp1286I	GDGCHC	3 cut(s)	1100, 1816, 2120
Bsp13I	TCCGGA	1 cut(s)	2110
Bsp1407I	TGTACA	1 cut(s)	2203
Bsp1720I	GCTNAGC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	1331
BspACI	CCGC	3 cut(s)	129, 966, 2803
BspANI	GGCC	5 cut(s)	183, 808, 928, 1376, 1637
BspCNI	CTCAG	4 cut(s)	1083, 1339, 2654, 2716
BspEI	TCCGGA	1 cut(s)	2110
BspFNI	CGCG	3 cut(s)	45, 129, 417
BspHI	TCATGA	1 cut(s)	2013
BspLI	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1488, 1596, 2181, 2325
BspMAI	CTGCAG	2 cut(s)	2198, 2554
BspMI	ACCTGC	1 cut(s)	2520
BspT104I	TTCGAA	1 cut(s)	2083
BspT107I	GGYRCC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	2803
BsrDI	GCAATG	3 cut(s)	1042, 2309, 2558
BsrGI	TGTACA	1 cut(s)	2203
BsrI	ACTGG	8 cut(s)	389, 594, 978, 1245, 1813, 2181, 2574, 2634
BssECI	CCNNGG	4 cut(s)	1151, 1331, 2407, 2541
BssT1I	CCWWGG	3 cut(s)	1151, 1331, 2407
Bst2UI	CCWGG	2 cut(s)	1381, 2238
Bst4CI	ACNGT	9 cut(s)	193, 268, 1114, 1554, 2023, 2043, 2389, 2657, 2824
Bst6I	CTCTTC	2 cut(s)	2129, 2629
BstAUI	TGTACA	1 cut(s)	2203
BstBI	TTCGAA	1 cut(s)	2083
BstC8I	GCNNGC	4 cut(s)	486, 1539, 1724, 2664
BstDEI	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1510, 2641, 2703
BstDSI	CCRYGG	2 cut(s)	1331, 2541
BstENI	CCTNNNNNAGG	1 cut(s)	1465
BstF5I	GGATG	7 cut(s)	10, 960, 1477, 1888, 1994, 2349, 2578
BstFNI	CGCG	3 cut(s)	45, 129, 417
BstHHI	GCGC	2 cut(s)	45, 2851
BstMAI	GTCTC	3 cut(s)	688, 1070, 2706
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1538, 1547, 2546
BstNI	CCWGG	2 cut(s)	1381, 2238
BstNSI	RCATGY	2 cut(s)	488, 1241
BstSCI	CCNGG	2 cut(s)	1379, 2236
BstSFI	CTRYAG	4 cut(s)	1368, 2194, 2421, 2550
BstSLI	GKGCMC	1 cut(s)	1100
BstUI	CGCG	3 cut(s)	45, 129, 417
BstV1I	GCAGC	7 cut(s)	31, 743, 2208, 2536, 2558, 2653, 2721
BstV2I	GAAGAC	3 cut(s)	69, 75, 2800
BstX2I	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1453, 2179
BstYI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1453, 2179
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	5 cut(s)	183, 808, 928, 1376, 1637
BtgI	CCRYGG	2 cut(s)	1331, 2541
BtrI	CACGTC	1 cut(s)	2761
BtsCI	GGATG	7 cut(s)	10, 960, 1477, 1888, 1994, 2349, 2578
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	5 cut(s)	528, 587, 1150, 1550, 2028
BveI	ACCTGC	1 cut(s)	2520
Cac8I	GCNNGC	4 cut(s)	486, 1539, 1724, 2664
CaiI	CAGNNNCTG	2 cut(s)	1552, 2393
CciI	TCATGA	1 cut(s)	2013
CfoI	GCGC	2 cut(s)	45, 2851
Cfr13I	GGNCC	5 cut(s)	181, 206, 343, 892, 1595
CseI	GACGC	3 cut(s)	432, 845, 2870
Csp6I	GTAC	8 cut(s)	264, 1199, 1708, 1787, 2102, 2204, 2385, 2825
CspCI	CAANNNNNGTGG	2 cut(s)	1206, 1241
CviQI	GTAC	8 cut(s)	264, 1199, 1708, 1787, 2102, 2204, 2385, 2825
DdeI	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1510, 2641, 2703
DraI	TTTAAA	1 cut(s)	2169
EaeI	YGGCCR	2 cut(s)	1374, 1635
Eam1104I	CTCTTC	2 cut(s)	2129, 2629
EarI	CTCTTC	2 cut(s)	2129, 2629
EciI	GGCGGA	1 cut(s)	981
Ecl136II	GAGCTC	1 cut(s)	2118
Eco130I	CCWWGG	3 cut(s)	1151, 1331, 2407
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	2120
Eco32I	GATATC	1 cut(s)	1897
Eco47I	GGWCC	4 cut(s)	206, 343, 892, 1595
Eco53kI	GAGCTC	1 cut(s)	2118
Eco57I	CTGAAG	2 cut(s)	1702, 1866
EcoICRI	GAGCTC	1 cut(s)	2118
EcoNI	CCTNNNNNAGG	1 cut(s)	1465
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	2649
EcoRII	CCWGG	2 cut(s)	1379, 2236
EcoRV	GATATC	1 cut(s)	1897
EcoT14I	CCWWGG	3 cut(s)	1151, 1331, 2407
EcoT38I	GRGCYC	1 cut(s)	2120
ErhI	CCWWGG	3 cut(s)	1151, 1331, 2407
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	4 cut(s)	753, 905, 1033, 1984
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	1504
FbaI	TGATCA	2 cut(s)	1860, 2482
Fnu4HI	GCNGC	7 cut(s)	20, 732, 2197, 2547, 2550, 2667, 2710
FokI	GGATG	7 cut(s)	17, 967, 1484, 1875, 2001, 2336, 2585
FriOI	GRGCYC	1 cut(s)	2120
Fsp4HI	GCNGC	7 cut(s)	20, 732, 2197, 2547, 2550, 2667, 2710
FspBI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1617, 1959
GlaI	GCGC	2 cut(s)	44, 2850
GluI	GCNGC	7 cut(s)	20, 732, 2197, 2547, 2550, 2667, 2710
GsuI	CTGGAG	2 cut(s)	372, 471
HaeIII	GGCC	5 cut(s)	183, 808, 928, 1376, 1637
HapII	CCGG	3 cut(s)	1574, 2111, 2753
HgaI	GACGC	3 cut(s)	432, 845, 2870
HhaI	GCGC	2 cut(s)	45, 2851
Hin6I	GCGC	2 cut(s)	43, 2849
HinP1I	GCGC	2 cut(s)	43, 2849
HincII	GTYRAC	3 cut(s)	907, 2262, 2758
HindII	GTYRAC	3 cut(s)	907, 2262, 2758
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	5 cut(s)	578, 958, 1180, 1499, 2726
HpaI	GTTAAC	1 cut(s)	2262
HpaII	CCGG	3 cut(s)	1574, 2111, 2753
HphI	GGTGA	4 cut(s)	383, 1085, 2282, 2724
Hpy166II	GTNNAC	4 cut(s)	587, 907, 2262, 2758
Hpy188I	TCNGA	9 cut(s)	347, 723, 1399, 1687, 1818, 1846, 1901, 2288, 2725
Hpy8I	GTNNAC	4 cut(s)	587, 907, 2262, 2758
HpyCH4III	ACNGT	9 cut(s)	193, 268, 1114, 1554, 2023, 2043, 2389, 2657, 2824
HpyCH4IV	ACGT	1 cut(s)	2760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1538, 1547, 2546
HpyF3I	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1510, 2641, 2703
HpySE526I	ACGT	1 cut(s)	2760
HspAI	GCGC	2 cut(s)	43, 2849
Kpn2I	TCCGGA	1 cut(s)	2110
Ksp22I	TGATCA	2 cut(s)	1860, 2482
KspAI	GTTAAC	1 cut(s)	2262
LmnI	GCTCC	4 cut(s)	391, 1492, 2323, 2503
Lsp1109I	GCAGC	7 cut(s)	31, 743, 2208, 2536, 2558, 2653, 2721
LweI	GCATC	7 cut(s)	257, 1022, 1897, 1957, 2447, 2485, 2527
MaeI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1617, 1959
MaeII	ACGT	1 cut(s)	2760
MaeIII	GTNAC	6 cut(s)	187, 882, 1240, 1303, 2138, 2270
MbiI	CCGCTC	1 cut(s)	2803
MflI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1453, 2179
MhlI	GDGCHC	3 cut(s)	1100, 1816, 2120
MlsI	TGGCCA	2 cut(s)	1376, 1637
MluI	ACGCGT	1 cut(s)	415
MluNI	TGGCCA	2 cut(s)	1376, 1637
MlyI	GAGTC	1 cut(s)	952
Mox20I	TGGCCA	2 cut(s)	1376, 1637
MroI	TCCGGA	1 cut(s)	2110
MroXI	GAANNNNTTC	1 cut(s)	1179
MscI	TGGCCA	2 cut(s)	1376, 1637
MseI	TTAA	8 cut(s)	669, 1209, 1755, 2168, 2261, 2403, 2565, 2840
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	2 cut(s)	1376, 1637
MspA1I	CMGCKG	1 cut(s)	2549
MspI	CCGG	3 cut(s)	1574, 2111, 2753
MspR9I	CCNGG	2 cut(s)	1381, 2238
Mva1269I	GAATGC	1 cut(s)	2277
MvaI	CCWGG	2 cut(s)	1381, 2238
MvnI	CGCG	3 cut(s)	45, 129, 417
MwoI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1538, 1547, 2546
NcoI	CCATGG	1 cut(s)	1331
NdeI	CATATG	1 cut(s)	1504
NlaIV	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1488, 1596, 2181, 2325
NmuCI	GTSAC	3 cut(s)	882, 1240, 2270
NspI	RCATGY	2 cut(s)	488, 1241
NspV	TTCGAA	1 cut(s)	2083
PaeI	GCATGC	1 cut(s)	488
PagI	TCATGA	1 cut(s)	2013
PceI	AGGCCT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	2766
PctI	GAATGC	1 cut(s)	2277
PdmI	GAANNNNTTC	1 cut(s)	1179
PfeI	GAWTC	4 cut(s)	578, 1180, 1499, 2726
PfoI	TCCNGGA	1 cut(s)	2236
PkrI	GCNGC	7 cut(s)	21, 733, 2198, 2548, 2551, 2668, 2711
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
PshBI	ATTAAT	1 cut(s)	1755
Psp124BI	GAGCTC	1 cut(s)	2120
Psp6I	CCWGG	2 cut(s)	1379, 2236
PspGI	CCWGG	2 cut(s)	1379, 2236
PspN4I	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1488, 1596, 2181, 2325
PspPI	GGNCC	5 cut(s)	181, 206, 343, 892, 1595
PstI	CTGCAG	2 cut(s)	2198, 2554
PstNI	CAGNNNCTG	2 cut(s)	1552, 2393
PsuI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1453, 2179
PvuII	CAGCTG	1 cut(s)	2549
RsaI	GTAC	8 cut(s)	265, 1200, 1709, 1788, 2103, 2205, 2386, 2826
RsaNI	GTAC	8 cut(s)	264, 1199, 1708, 1787, 2102, 2204, 2385, 2825
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	2120
SaqAI	TTAA	8 cut(s)	669, 1209, 1755, 2168, 2261, 2403, 2565, 2840
SatI	GCNGC	7 cut(s)	20, 732, 2197, 2547, 2550, 2667, 2710
Sau96I	GGNCC	5 cut(s)	181, 206, 343, 892, 1595
SchI	GAGTC	1 cut(s)	952
ScrFI	CCNGG	2 cut(s)	1381, 2238
SduI	GDGCHC	3 cut(s)	1100, 1816, 2120
SfaNI	GCATC	7 cut(s)	257, 1022, 1897, 1957, 2447, 2485, 2527
SfcI	CTRYAG	4 cut(s)	1368, 2194, 2421, 2550
SfuI	TTCGAA	1 cut(s)	2083
SinI	GGWCC	4 cut(s)	206, 343, 892, 1595
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	4 cut(s)	353, 1184, 1313, 2798
SmoI	CTYRAG	4 cut(s)	353, 1184, 1313, 2798
SpeI	ACTAGT	1 cut(s)	1616
SphI	GCATGC	1 cut(s)	488
SseBI	AGGCCT	1 cut(s)	808
SsiI	CCGC	3 cut(s)	129, 966, 2803
SspMI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1617, 1959
SstI	GAGCTC	1 cut(s)	2120
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	1379, 2236
StyI	CCWWGG	3 cut(s)	1151, 1331, 2407
TaaI	ACNGT	9 cut(s)	193, 268, 1114, 1554, 2023, 2043, 2389, 2657, 2824
TaiI	ACGT	1 cut(s)	2763
TaqI	TCGA	6 cut(s)	514, 562, 636, 1728, 2083, 2769
TatI	WGTACW	4 cut(s)	263, 2101, 2203, 2384
TfiI	GAWTC	4 cut(s)	578, 1180, 1499, 2726
Tru1I	TTAA	8 cut(s)	669, 1209, 1755, 2168, 2261, 2403, 2565, 2840
Tru9I	TTAA	8 cut(s)	669, 1209, 1755, 2168, 2261, 2403, 2565, 2840
TscAI	CASTG	5 cut(s)	528, 594, 1150, 1557, 2028
TseFI	GTSAC	3 cut(s)	882, 1240, 2270
TseI	GCWGC	7 cut(s)	19, 731, 2196, 2546, 2549, 2666, 2709
Tsp45I	GTSAC	3 cut(s)	882, 1240, 2270
TspGWI	ACGGA	3 cut(s)	847, 1274, 1780
TspRI	CASTG	5 cut(s)	528, 594, 1150, 1557, 2028
VpaK11BI	GGWCC	4 cut(s)	206, 343, 892, 1595
VspI	ATTAAT	1 cut(s)	1755
XagI	CCTNNNNNAGG	1 cut(s)	1465
XapI	RAATTY	5 cut(s)	913, 2079, 2209, 2341, 2649
XbaI	TCTAGA	1 cut(s)	1958
XceI	RCATGY	2 cut(s)	488, 1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1798
XmnI	GAANNNNTTC	1 cut(s)	1179
XspI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1617, 1959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.