Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004469

Physical Location & Seq

Genomic Coordinates Forward (+)

50819696 .. 50820148

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGCGTTTCGGTTTCAGGGGCTGCAAACACCTCTACTGCCACCAATTGCGCGCAATCTGTTTGACACTCCTGCTATGCACAAGCACTGCCCGACCTATTGTGGTGCGTGGTGCGGGCCTAAGGCCTGCTGAAGATGCAAATGCCCTAGCCTTAGTTCATGTGGAAGCTGAGTCATCAACTGCGAAAAGAAGCAGGCCTACATCACTGTATACGTCCCCAAAGAAACTAAAAGTTCTCTTCAATGAAGGTGAGGCTGCTGCTAGCTCATCTATGCTACCTAAGAAACTGAAAGTCCCGGAATTCCACACCAAATTCTCTGCTAAATCTCTAGGTCTCATTGAAGCTCCGGGAGGTGTCTTAGTTCCTAAGGAAGGATCATTCCATAAGGAATCTATGCAGCTGGTCAAAGTGGAACAGAAGGAGAAAAGAGGCAGGCCTTTTTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.89

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01460 AT2G01460 AT2G01460
fragaria_vesca	FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570
malus_domestica	MD13G1024500.v1.1 MD16G1027200.v1.1
prunus_persica	Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1
pyrus_communis	pycom16g02300
rosa_chinensis	RchiOBHm_Chr4g0441441
rosa_laevigata	RLG00000006092
rosa_multiflora	Rmu_sc0003360.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382310
rosa_rugosa	Rorug04G0333700
rosa_samantha	Rh4AG385200 Rh4BG399400 Rh4CG414400 Rh4DG392000
rosa_wichuraiana	Rw4G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	302, 314
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	374, 446
AgsI	TTSAA	2 cut(s)	244, 344
AluBI	AGCT	4 cut(s)	170, 267, 347, 403
AluI	AGCT	4 cut(s)	170, 267, 347, 403
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	24
AoxI	GGCC	4 cut(s)	118, 125, 197, 437
ApeKI	GCWGC	4 cut(s)	24, 257, 260, 400
ApoI	RAATTY	2 cut(s)	302, 314
AspLEI	GCGC	2 cut(s)	54, 56
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	2 cut(s)	299, 351
AsuHPI	GGTGA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	263
AxyI	CCTNAGG	2 cut(s)	122, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BbvI	GCAGC	4 cut(s)	11, 244, 247, 412
BcnI	CCSGG	2 cut(s)	299, 351
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	3 cut(s)	149, 264, 332
BisI	GCNGC	4 cut(s)	25, 258, 261, 401
BlsI	GCNGC	4 cut(s)	26, 259, 262, 402
Bme1390I	CCNGG	2 cut(s)	299, 351
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	299, 351
BmsI	GCATC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	299, 351
BsaI	GGTCTC	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 446
Bse21I	CCTNAGG	2 cut(s)	122, 369
BseLI	CCNNNNNNNGG	2 cut(s)	374, 446
BseMII	CTCAG	1 cut(s)	162
BsePI	GCGCGC	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	11, 244, 247, 412
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	120, 127, 199, 439
BsiSI	CCGG	2 cut(s)	299, 350
BslFI	GGGAC	2 cut(s)	202, 281
BslI	CCNNNNNNNGG	2 cut(s)	374, 446
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	202, 281
BsnI	GGCC	4 cut(s)	120, 127, 199, 439
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	4 cut(s)	120, 127, 199, 439
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	341
BssHII	GCGCGC	1 cut(s)	52
BssMI	GATC	1 cut(s)	377
BssNAI	GTATAC	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	6 cut(s)	54, 118, 129, 197, 265, 437
BstDEI	CTNAG	6 cut(s)	122, 154, 171, 282, 361, 369
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	54, 56
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	297, 349
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	11, 244, 247, 412
BstZ17I	GTATAC	1 cut(s)	213
Bsu36I	CCTNAGG	2 cut(s)	122, 369
BsuRI	GGCC	4 cut(s)	120, 127, 199, 439
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 206
Cac8I	GCNNGC	6 cut(s)	54, 118, 129, 197, 265, 437
CaiI	CAGNNNCTG	1 cut(s)	24
CfoI	GCGC	2 cut(s)	54, 56
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	1 cut(s)	161
DdeI	CTNAG	6 cut(s)	122, 154, 171, 282, 361, 369
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco147I	AGGCCT	3 cut(s)	127, 199, 439
Eco31I	GGTCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	153
Eco81I	CCTNAGG	2 cut(s)	122, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	302
FaeI	CATG	1 cut(s)	164
FaiI	YATR	6 cut(s)	79, 162, 213, 275, 387, 398
FaqI	GGGAC	2 cut(s)	202, 281
FatI	CATG	1 cut(s)	160
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	4 cut(s)	25, 258, 261, 401
Fsp4HI	GCNGC	4 cut(s)	25, 258, 261, 401
FspBI	CTAG	3 cut(s)	149, 264, 332
GlaI	GCGC	2 cut(s)	53, 55
GluI	GCNGC	4 cut(s)	25, 258, 261, 401
HaeIII	GGCC	4 cut(s)	120, 127, 199, 439
HapII	CCGG	2 cut(s)	299, 350
HhaI	GCGC	2 cut(s)	54, 56
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	2 cut(s)	52, 54
HinP1I	GCGC	2 cut(s)	52, 54
HinfI	GANTC	2 cut(s)	173, 392
HpaII	CCGG	2 cut(s)	299, 350
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	242, 368, 415
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	27, 81, 140, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	6 cut(s)	122, 154, 171, 282, 361, 369
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	2 cut(s)	52, 54
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	2 cut(s)	4, 352
LpnPI	CCDG	8 cut(s)	4, 86, 141, 181, 312, 363, 389, 421
Lsp1109I	GCAGC	4 cut(s)	11, 244, 247, 412
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	3 cut(s)	149, 264, 332
MaeII	ACGT	1 cut(s)	215
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	2 cut(s)	146, 232
MfeI	CAATTG	1 cut(s)	47
MluCI	AATT	3 cut(s)	47, 302, 314
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	44, 247, 347, 425
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	299, 350
MspR9I	CCNGG	2 cut(s)	299, 351
MunI	CAATTG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	2 cut(s)	299, 351
NdeII	GATC	1 cut(s)	377
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	164
PauI	GCGCGC	1 cut(s)	52
PceI	AGGCCT	3 cut(s)	127, 199, 439
PfeI	GAWTC	1 cut(s)	392
PfoI	TCCNGGA	2 cut(s)	297, 349
PkrI	GCNGC	4 cut(s)	26, 259, 262, 402
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	24
PteI	GCGCGC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	403
SatI	GCNGC	4 cut(s)	25, 258, 261, 401
Sau3AI	GATC	1 cut(s)	377
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	299, 351
SfaNI	GCATC	1 cut(s)	127
Sse9I	AATT	3 cut(s)	47, 302, 314
SseBI	AGGCCT	3 cut(s)	127, 199, 439
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	3 cut(s)	149, 264, 332
StuI	AGGCCT	3 cut(s)	127, 199, 439
StyD4I	CCNGG	2 cut(s)	297, 349
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	218
TasI	AATT	3 cut(s)	47, 302, 314
TfiI	GAWTC	1 cut(s)	392
TscAI	CASTG	2 cut(s)	94, 213
TseI	GCWGC	4 cut(s)	24, 257, 260, 400
TspDTI	ATGAA	2 cut(s)	149, 261
TspRI	CASTG	2 cut(s)	94, 213
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	302, 314
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	3 cut(s)	149, 264, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.