Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004469

Physical Location & Seq

Genomic Coordinates Forward (+)

60353603 .. 60363334

Gene Structure 9732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGGATGATGAAGTTGTGCAGCGAGTTTTCCAAGAAGGAGGGCGAGACTATTTCCAACAGCAACCCTCCACTTCGTCTTCGTCTTCCTCTATTCTCCAATCACTTCCTCTCCATGTGTCTTTTGATCGTGGGTATTATTTGTTGGTAAAATCTATCCAAGAGCTTAGAGAGAAAAAAGAGGGCCTTGTTACAGTTGGCATTGGTGGTCCAAGCGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTGTGTCAATGGAGAACTATCGTGATGGGATTGATGAAGGAAACGATCTCGGTTCAATAGATTTTGATATGCTGGTCCGAAATCTTGAGGATTTGGCAAAGGGTGAAGATACATTGGCTCCAGTTTTTGACTATCAAGAAAAGAAACGCGTTGGTTCAACAACAATACAGAGTGCTTCATCTGGAGTGGTAATAGTTGATGGCACCTATGCTTTGCATGCAAAATTACGCTCTTTGCTGGATATTCGAGTTGCAGTGGTTGGTGGTGTCCATTTCAGCCTTCTTTCCAAAGTTCGATATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGCATTTTCCCATTGTTTAGGAAGCACATCGAACCAGACCTTCATCATGCACAGATTAGGATTAACAACAGCTTTGTCTCATCATTTAGGGAGGCAATCTACAAGCTGAAATGTCGGAGTGAGGCAGCAGAGGGACATTTTGCTAGTGCCTTTCAAGAAAATGTTGCTCAAATAGATAATTTTATTGAGATGTATCTTAGGCCTCCTTCGGCAAGTGAAGAAGCACGGATAAATGATTGGATCAAGGTGCGTCAATCTGGTATAAGATATTATCTGTCACTTGGGGACCAGAGGATTGTGGACAAAAATTTCATTATCAGGCCAAAAGCAGAGTTTGAGCAGGTTGGAAGGATGACTCTAGGCGGATTACTGGCTTTGGGATACGCTGTGGTTGTTAGCTACAAAAGAGCATCCAAATCAGTCAATAATGGCAATGTTTCATTGTCCCTTGAAAGCATTGATAGTCTTGGTGAGACATTCATGGTGCTGAGGGGCACAAATAGAAAAACAGTTGGAACAGAAGCATTGAAGATGGGTATCAGTGAGCCTTGGATCACTAAATCATATCTGGAAATGATTCTTGAGAGCAAAGGCGTACCTCGCCTTAATACACCACCTCTTTTGTCAAATACGCCTGTGACTAGTAATCAGGACAGAATGATTGTTGCACCAAAACCAATCCGTGTTCCTCCAAATCTTGTTACTAGGCTCGAGGATCTATCTCAGCCATGGACTAGATCTCCAACAAAATCAACGATGGATCCTATAGTGGCCACCTGGCATTTCATCTCATCAGATCCTTCCCAACCTGATAGCTCAACCATAGATCACTCTCATAAAGCAACCACAGATCCTTCCTCTTTCAGGGATGGCATGAAATTGGCTCCAATGCCTGATTCATATGACTTAGATAGGGGATTGCTTCTTGCTGTGCAAGCGATACAGGCACTGTTGGAGAATAAAGGTTTTCCGGTTATAGTTGGAATTGGGGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCCAATATAGTTGGCTGTGAAGTTGTTTCCCTTGAAAGATATTACAAATCTGAACAAGTAAAGGATTTCAAGTACGATGACTTCAGCTCACTCGATCTATCTTTACTTTCAAAAAACATTAATGACATAAGGAATGGTCAAAGGACAAAAGTACCCATGTTTGATTTGGAAACTGGTGCTCGGAGTGGGTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATCATTTTTGAAGGAGTTTATGCTCTGCATCCAGATATCCGAAAATCACTTGACTTGTGGATTGCTGTCGTTGGAGGTGTTCATTCGCATCTCATTTCTAGAGTTCAAAGGGATAAAAGTAAAGTGGGATGTTTTATGTCCCAGAATGAGATCATGATGACAGTGTTTCCAATGTTCCAACAGTTCATTGAACCCCATCTGGTTCATGCACATCTCAAAATTCGAAATGACTTTGATCCTGTACTTTCTCCGGAGAGCTCATTGTTTTTATTGAAGAGTAACAAGCAAGTGGCTTATCAAGATATTTTAAAAATACTGGATCCTGTAAAGTTCTGCAGCTCTGTACAGAATTTCATTGATTTATACTTGAAACTTCCTGGACTTCCTACCAATGAGCAGTTAACAGAGGGTGACTGCATTCGCGTCAGAATATGTGAGGGCAGATTTGCATTGCTGATACGGGAGCCTATACGAGAAGGGAATTTCATCATCCAACCTAAAGTGGATTTTGATATTAGCATTAGTACAGTTTCTGGACTTCTTAACCTTGGGTATCAAGCTGTAGCTTATATTGAAGCATCTGCTTTCATCTACCAAGATGGGAAGATTTTGGTTGAGGTTGATCATCTACAAGATGCTCCAAACCCTTACCTGCAAATCAAGGGGGTTGATAAAGATGCCGTGGCAGCTGCAGGGTCATTGCTTAAACTGGATGGTTCATATACTACCAAGAGTTATCTTCAAATAGTTCTGGAAAGATTACCAGAACTGGGAAGAGGCTCAGGTGGAATTCACAGTCAGCAAGCTGCAAGATTGCAGGAACTTGTGGAGTTCATTCAGTCTCAGGGCAGCAGTTCAGCTTCAGAATCCTCACCGATTAGGGAGGTTTCTCCAGTTGACGTGGTCATCGAAGATATGCAGTCAAGGATTAGAAGACTTGAGCGGTGGCATACAATCAATACGGTACTATGGACATTTTTAATGTCTGCGCTTGTTGGTTATTCGCTCTACCAAAGGAAGCGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

963

Amino Acids

107.13

Weight (kDa)

6.05

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	65 - 223	6.9e-07	Phosphoribulokinase / Uridine kinase family
PRK	PF00485	528 - 695	9e-18	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01460 AT2G01460 AT2G01460
fragaria_vesca	FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570
malus_domestica	MD13G1024500.v1.1 MD16G1027200.v1.1
prunus_persica	Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1
pyrus_communis	pycom16g02300
rosa_chinensis	RchiOBHm_Chr4g0441441
rosa_laevigata	RLG00000006092
rosa_multiflora	Rmu_sc0003360.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382310
rosa_rugosa	Rorug04G0333700
rosa_samantha	Rh4AG385200 Rh4BG399400 Rh4CG414400 Rh4DG392000
rosa_wichuraiana	Rw4G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	937, 2523
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	2806
AccII	CGCG	2 cut(s)	417, 2286
AccIII	TCCGGA	1 cut(s)	2113
AciI	CCGC	3 cut(s)	213, 969, 2806
AcoI	YGGCCR	2 cut(s)	1377, 1638
AcsI	RAATTY	5 cut(s)	913, 2082, 2212, 2344, 2652
AcuI	CTGAAG	3 cut(s)	1705, 1869, 2709
AfaI	GTAC	8 cut(s)	265, 1203, 1712, 1791, 2106, 2208, 2389, 2829
AfiI	CCNNNNNNNGG	2 cut(s)	1470, 2633
AflIII	ACRYGT	1 cut(s)	415
AhlI	ACTAGT	2 cut(s)	1247, 1619
AjiI	CACGTC	1 cut(s)	2764
AjnI	CCWGG	2 cut(s)	1382, 2239
AjuI	GAANNNNNNNTTGG	2 cut(s)	1486, 1518
Alw21I	GWGCWC	2 cut(s)	1819, 2123
Alw26I	GTCTC	4 cut(s)	39, 688, 1073, 2709
AlwNI	CAGNNNCTG	2 cut(s)	1555, 2396
Ama87I	CYCGRG	1 cut(s)	1316
Aor13HI	TCCGGA	1 cut(s)	2113
AoxI	GGCC	5 cut(s)	181, 806, 926, 1377, 1638
ApeKI	GCWGC	7 cut(s)	19, 731, 2199, 2549, 2552, 2669, 2712
ApoI	RAATTY	5 cut(s)	913, 2082, 2212, 2344, 2652
ArsI	GACNNNNNNTTYG	1 cut(s)	2869
AseI	ATTAAT	1 cut(s)	1758
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	1 cut(s)	2854
AspS9I	GGNCC	5 cut(s)	181, 206, 343, 892, 1598
AsuHPI	GGTGA	4 cut(s)	383, 1088, 2285, 2727
AsuII	TTCGAA	1 cut(s)	2086
AvaI	CYCGRG	1 cut(s)	1316
AvaII	GGWCC	4 cut(s)	206, 343, 892, 1598
BaeGI	GKGCMC	1 cut(s)	1103
BaeI	ACNNNNGTAYC	2 cut(s)	1773, 1806
BalI	TGGCCA	2 cut(s)	1379, 1640
BamHI	GGATCC	2 cut(s)	1366, 2182
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	2123
BarI	GAAGNNNNNNTAC	2 cut(s)	1703, 1735
BbsI	GAAGAC	3 cut(s)	69, 75, 2803
Bbv12I	GWGCWC	2 cut(s)	1819, 2123
BbvCI	CCTCAGC	1 cut(s)	1094
BbvI	GCAGC	7 cut(s)	31, 743, 2211, 2539, 2561, 2656, 2724
BccI	CCATC	8 cut(s)	287, 461, 1132, 1357, 1469, 2067, 2456, 2570
BceAI	ACGGC	1 cut(s)	2528
BciT130I	CCWGG	2 cut(s)	1384, 2241
BciVI	GTATCC	1 cut(s)	980
BclI	TGATCA	2 cut(s)	1863, 2485
BcoDI	GTCTC	4 cut(s)	39, 688, 1073, 2709
BcuI	ACTAGT	2 cut(s)	1247, 1619
BfaI	CTAG	7 cut(s)	750, 965, 1248, 1311, 1341, 1620, 1962
BfmI	CTRYAG	4 cut(s)	1371, 2197, 2424, 2553
BfuAI	ACCTGC	2 cut(s)	937, 2523
BfuI	GTATCC	1 cut(s)	980
BglII	AGATCT	1 cut(s)	1343
BisI	GCNGC	7 cut(s)	20, 732, 2200, 2550, 2553, 2670, 2713
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	7 cut(s)	21, 733, 2201, 2551, 2554, 2671, 2714
Bme1390I	CCNGG	2 cut(s)	1384, 2241
Bme18I	GGWCC	4 cut(s)	206, 343, 892, 1598
BmeT110I	CYCGRG	1 cut(s)	1316
BmgBI	CACGTC	1 cut(s)	2764
BmgT120I	GGNCC	5 cut(s)	181, 206, 343, 892, 1598
BmiI	GGNNCC	8 cut(s)	387, 472, 893, 1368, 1491, 1599, 2184, 2328
BmrFI	CCNGG	2 cut(s)	1384, 2241
BmrI	ACTGGG	1 cut(s)	2642
BmsI	GCATC	7 cut(s)	257, 1025, 1900, 1960, 2450, 2488, 2530
BmuI	ACTGGG	1 cut(s)	2642
BpiI	GAAGAC	3 cut(s)	69, 75, 2803
BpmI	CTGGAG	3 cut(s)	372, 471, 2739
Bpu10I	CCTNAGC	2 cut(s)	1094, 2644
Bpu1102I	GCTNAGC	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	2086
BpuEI	CTTGAG	3 cut(s)	374, 1208, 2822
BsaBI	GATNNNNATC	1 cut(s)	1142
BsaJI	CCNNGG	4 cut(s)	1154, 1334, 2410, 2544
BsaWI	WCCGGW	2 cut(s)	1576, 2113
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 370, 400, 1330, 1360
Bsc4I	CCNNNNNNNGG	2 cut(s)	1470, 2633
Bse1I	ACTGG	8 cut(s)	389, 594, 981, 1816, 2184, 2577, 2637, 2756
Bse3DI	GCAATG	3 cut(s)	1045, 2312, 2561
Bse8I	GATNNNNATC	1 cut(s)	1142
BseAI	TCCGGA	1 cut(s)	2113
BseBI	CCWGG	2 cut(s)	1384, 2241
BseDI	CCNNGG	4 cut(s)	1154, 1334, 2410, 2544
BseGI	GGATG	8 cut(s)	10, 963, 1016, 1480, 1891, 1997, 2352, 2581
BseJI	GATNNNNATC	1 cut(s)	1142
BseLI	CCNNNNNNNGG	2 cut(s)	1470, 2633
BseMI	GCAATG	3 cut(s)	1045, 2312, 2561
BseMII	CTCAG	4 cut(s)	1085, 1343, 2658, 2720
BseNI	ACTGG	8 cut(s)	389, 594, 981, 1816, 2184, 2577, 2637, 2756
BseSI	GKGCMC	1 cut(s)	1103
BseXI	GCAGC	7 cut(s)	31, 743, 2211, 2539, 2561, 2656, 2724
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	417, 2286
BshFI	GGCC	5 cut(s)	183, 808, 928, 1379, 1640
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	1819, 2123
BsiHKCI	CYCGRG	1 cut(s)	1316
BsiSI	CCGG	2 cut(s)	1577, 2114
BslFI	GGGAC	4 cut(s)	753, 905, 1036, 1987
BslI	CCNNNNNNNGG	2 cut(s)	1470, 2633
BsmAI	GTCTC	4 cut(s)	39, 688, 1073, 2709
BsmFI	GGGAC	4 cut(s)	753, 905, 1036, 1987
BsmI	GAATGC	1 cut(s)	2280
BsnI	GGCC	5 cut(s)	183, 808, 928, 1379, 1640
BsoBI	CYCGRG	1 cut(s)	1316
Bsp119I	TTCGAA	1 cut(s)	2086
Bsp1286I	GDGCHC	3 cut(s)	1103, 1819, 2123
Bsp13I	TCCGGA	1 cut(s)	2113
Bsp1407I	TGTACA	1 cut(s)	2206
Bsp1720I	GCTNAGC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	1334
BspACI	CCGC	3 cut(s)	213, 969, 2806
BspANI	GGCC	5 cut(s)	183, 808, 928, 1379, 1640
BspCNI	CTCAG	4 cut(s)	1086, 1342, 2657, 2719
BspEI	TCCGGA	1 cut(s)	2113
BspFNI	CGCG	2 cut(s)	417, 2286
BspHI	TCATGA	1 cut(s)	2016
BspLI	GGNNCC	8 cut(s)	387, 472, 893, 1368, 1491, 1599, 2184, 2328
BspMAI	CTGCAG	2 cut(s)	2201, 2557
BspMI	ACCTGC	2 cut(s)	937, 2523
BspT104I	TTCGAA	1 cut(s)	2086
BspT107I	GGYRCC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	2806
BsrDI	GCAATG	3 cut(s)	1045, 2312, 2561
BsrGI	TGTACA	1 cut(s)	2206
BsrI	ACTGG	8 cut(s)	389, 594, 981, 1816, 2184, 2577, 2637, 2756
BssECI	CCNNGG	4 cut(s)	1154, 1334, 2410, 2544
BssT1I	CCWWGG	3 cut(s)	1154, 1334, 2410
Bst2UI	CCWGG	2 cut(s)	1384, 2241
Bst4CI	ACNGT	9 cut(s)	193, 268, 1117, 1557, 2026, 2046, 2392, 2660, 2827
Bst6I	CTCTTC	2 cut(s)	2132, 2632
BstAUI	TGTACA	1 cut(s)	2206
BstBI	TTCGAA	1 cut(s)	2086
BstC8I	GCNNGC	3 cut(s)	486, 1542, 2667
BstDEI	CTNAG	8 cut(s)	164, 232, 803, 1094, 1329, 1513, 2644, 2706
BstDSI	CCRYGG	2 cut(s)	1334, 2544
BstENI	CCTNNNNNAGG	1 cut(s)	1468
BstF5I	GGATG	8 cut(s)	10, 963, 1016, 1480, 1891, 1997, 2352, 2581
BstFNI	CGCG	2 cut(s)	417, 2286
BstHHI	GCGC	1 cut(s)	2854
BstMAI	GTCTC	4 cut(s)	39, 688, 1073, 2709
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 1206, 1541, 1550, 2549
BstNI	CCWGG	2 cut(s)	1384, 2241
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	1382, 2239
BstSFI	CTRYAG	4 cut(s)	1371, 2197, 2424, 2553
BstSLI	GKGCMC	1 cut(s)	1103
BstUI	CGCG	2 cut(s)	417, 2286
BstV1I	GCAGC	7 cut(s)	31, 743, 2211, 2539, 2561, 2656, 2724
BstV2I	GAAGAC	3 cut(s)	69, 75, 2803
BstX2I	RGATCY	6 cut(s)	1321, 1343, 1366, 1402, 1456, 2182
BstYI	RGATCY	6 cut(s)	1321, 1343, 1366, 1402, 1456, 2182
BsuI	GTATCC	1 cut(s)	980
BsuRI	GGCC	5 cut(s)	183, 808, 928, 1379, 1640
BtgI	CCRYGG	2 cut(s)	1334, 2544
BtrI	CACGTC	1 cut(s)	2764
BtsCI	GGATG	8 cut(s)	10, 963, 1016, 1480, 1891, 1997, 2352, 2581
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	5 cut(s)	528, 587, 1153, 1553, 2031
BveI	ACCTGC	2 cut(s)	937, 2523
Cac8I	GCNNGC	3 cut(s)	486, 1542, 2667
CaiI	CAGNNNCTG	2 cut(s)	1555, 2396
CciI	TCATGA	1 cut(s)	2016
CfoI	GCGC	1 cut(s)	2854
Cfr13I	GGNCC	5 cut(s)	181, 206, 343, 892, 1598
CseI	GACGC	3 cut(s)	845, 2275, 2873
Csp6I	GTAC	8 cut(s)	264, 1202, 1711, 1790, 2105, 2207, 2388, 2828
CspCI	CAANNNNNGTGG	2 cut(s)	1209, 1244
CviAII	CATG	9 cut(s)	113, 485, 653, 1087, 1335, 1480, 1795, 2017, 2069
CviQI	GTAC	8 cut(s)	264, 1202, 1711, 1790, 2105, 2207, 2388, 2828
DdeI	CTNAG	8 cut(s)	164, 232, 803, 1094, 1329, 1513, 2644, 2706
DraI	TTTAAA	1 cut(s)	2172
EaeI	YGGCCR	2 cut(s)	1377, 1638
Eam1104I	CTCTTC	2 cut(s)	2132, 2632
EarI	CTCTTC	2 cut(s)	2132, 2632
EciI	GGCGGA	1 cut(s)	984
Ecl136II	GAGCTC	1 cut(s)	2121
Eco130I	CCWWGG	3 cut(s)	1154, 1334, 2410
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	2123
Eco32I	GATATC	1 cut(s)	1900
Eco47I	GGWCC	4 cut(s)	206, 343, 892, 1598
Eco53kI	GAGCTC	1 cut(s)	2121
Eco57I	CTGAAG	3 cut(s)	1705, 1869, 2709
Eco88I	CYCGRG	1 cut(s)	1316
EcoICRI	GAGCTC	1 cut(s)	2121
EcoNI	CCTNNNNNAGG	1 cut(s)	1468
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	2652
EcoRII	CCWGG	2 cut(s)	1382, 2239
EcoRV	GATATC	1 cut(s)	1900
EcoT14I	CCWWGG	3 cut(s)	1154, 1334, 2410
EcoT38I	GRGCYC	1 cut(s)	2123
ErhI	CCWWGG	3 cut(s)	1154, 1334, 2410
FaeI	CATG	9 cut(s)	116, 488, 656, 1090, 1338, 1483, 1798, 2020, 2072
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	4 cut(s)	753, 905, 1036, 1987
FatI	CATG	9 cut(s)	112, 484, 652, 1086, 1334, 1479, 1794, 2016, 2068
FauNDI	CATATG	1 cut(s)	1507
FbaI	TGATCA	2 cut(s)	1863, 2485
Fnu4HI	GCNGC	7 cut(s)	20, 732, 2200, 2550, 2553, 2670, 2713
FokI	GGATG	8 cut(s)	17, 970, 1003, 1487, 1878, 2004, 2339, 2588
FriOI	GRGCYC	1 cut(s)	2123
Fsp4HI	GCNGC	7 cut(s)	20, 732, 2200, 2550, 2553, 2670, 2713
FspBI	CTAG	7 cut(s)	750, 965, 1248, 1311, 1341, 1620, 1962
GlaI	GCGC	1 cut(s)	2853
GluI	GCNGC	7 cut(s)	20, 732, 2200, 2550, 2553, 2670, 2713
GsuI	CTGGAG	3 cut(s)	372, 471, 2739
HaeIII	GGCC	5 cut(s)	183, 808, 928, 1379, 1640
HapII	CCGG	2 cut(s)	1577, 2114
HgaI	GACGC	3 cut(s)	845, 2275, 2873
HhaI	GCGC	1 cut(s)	2854
Hin1II	CATG	9 cut(s)	116, 488, 656, 1090, 1338, 1483, 1798, 2020, 2072
Hin6I	GCGC	1 cut(s)	2852
HinP1I	GCGC	1 cut(s)	2852
HincII	GTYRAC	2 cut(s)	2265, 2761
HindII	GTYRAC	2 cut(s)	2265, 2761
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	5 cut(s)	578, 961, 1183, 1502, 2729
HpaI	GTTAAC	1 cut(s)	2265
HpaII	CCGG	2 cut(s)	1577, 2114
HphI	GGTGA	4 cut(s)	383, 1088, 2285, 2727
Hpy166II	GTNNAC	4 cut(s)	587, 907, 2265, 2761
Hpy188I	TCNGA	9 cut(s)	347, 723, 1402, 1690, 1821, 1849, 1904, 2291, 2728
Hpy8I	GTNNAC	4 cut(s)	587, 907, 2265, 2761
HpyCH4III	ACNGT	9 cut(s)	193, 268, 1117, 1557, 2026, 2046, 2392, 2660, 2827
HpyCH4IV	ACGT	1 cut(s)	2763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 1206, 1541, 1550, 2549
HpyF3I	CTNAG	8 cut(s)	164, 232, 803, 1094, 1329, 1513, 2644, 2706
HpySE526I	ACGT	1 cut(s)	2763
Hsp92II	CATG	9 cut(s)	116, 488, 656, 1090, 1338, 1483, 1798, 2020, 2072
HspAI	GCGC	1 cut(s)	2852
Kpn2I	TCCGGA	1 cut(s)	2113
Ksp22I	TGATCA	2 cut(s)	1863, 2485
KspAI	GTTAAC	1 cut(s)	2265
LmnI	GCTCC	4 cut(s)	391, 1495, 2326, 2506
Lsp1109I	GCAGC	7 cut(s)	31, 743, 2211, 2539, 2561, 2656, 2724
LweI	GCATC	7 cut(s)	257, 1025, 1900, 1960, 2450, 2488, 2530
MaeI	CTAG	7 cut(s)	750, 965, 1248, 1311, 1341, 1620, 1962
MaeII	ACGT	1 cut(s)	2763
MaeIII	GTNAC	6 cut(s)	187, 882, 1243, 1306, 2141, 2273
MbiI	CCGCTC	1 cut(s)	2806
MflI	RGATCY	6 cut(s)	1321, 1343, 1366, 1402, 1456, 2182
MhlI	GDGCHC	3 cut(s)	1103, 1819, 2123
MlsI	TGGCCA	2 cut(s)	1379, 1640
MluCI	AATT	9 cut(s)	491, 784, 913, 1484, 1590, 2082, 2212, 2344, 2652
MluI	ACGCGT	1 cut(s)	415
MluNI	TGGCCA	2 cut(s)	1379, 1640
MlyI	GAGTC	1 cut(s)	955
Mox20I	TGGCCA	2 cut(s)	1379, 1640
MroI	TCCGGA	1 cut(s)	2113
MroXI	GAANNNNTTC	1 cut(s)	1182
MscI	TGGCCA	2 cut(s)	1379, 1640
MseI	TTAA	8 cut(s)	669, 1212, 1758, 2171, 2264, 2406, 2568, 2843
Msp20I	TGGCCA	2 cut(s)	1379, 1640
MspA1I	CMGCKG	1 cut(s)	2552
MspI	CCGG	2 cut(s)	1577, 2114
MspR9I	CCNGG	2 cut(s)	1384, 2241
Mva1269I	GAATGC	1 cut(s)	2280
MvaI	CCWGG	2 cut(s)	1384, 2241
MvnI	CGCG	2 cut(s)	417, 2286
MwoI	GCNNNNNNNGC	5 cut(s)	485, 1206, 1541, 1550, 2549
NcoI	CCATGG	1 cut(s)	1334
NdeI	CATATG	1 cut(s)	1507
NlaIII	CATG	9 cut(s)	116, 488, 656, 1090, 1338, 1483, 1798, 2020, 2072
NlaIV	GGNNCC	8 cut(s)	387, 472, 893, 1368, 1491, 1599, 2184, 2328
NmuCI	GTSAC	3 cut(s)	882, 1243, 2273
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	2086
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	1316
PagI	TCATGA	1 cut(s)	2016
PceI	AGGCCT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	2769
PctI	GAATGC	1 cut(s)	2280
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	578, 1183, 1502, 2729
PflFI	GACNNNGTC	1 cut(s)	2765
PfoI	TCCNGGA	1 cut(s)	2239
PkrI	GCNGC	7 cut(s)	21, 733, 2201, 2551, 2554, 2671, 2714
PleI	GAGTC	1 cut(s)	955
PpsI	GAGTC	1 cut(s)	955
PshBI	ATTAAT	1 cut(s)	1758
Psp124BI	GAGCTC	1 cut(s)	2123
Psp6I	CCWGG	2 cut(s)	1382, 2239
PspGI	CCWGG	2 cut(s)	1382, 2239
PspN4I	GGNNCC	8 cut(s)	387, 472, 893, 1368, 1491, 1599, 2184, 2328
PspPI	GGNCC	5 cut(s)	181, 206, 343, 892, 1598
PspXI	VCTCGAGB	1 cut(s)	1316
PstI	CTGCAG	2 cut(s)	2201, 2557
PstNI	CAGNNNCTG	2 cut(s)	1555, 2396
PsuI	RGATCY	6 cut(s)	1321, 1343, 1366, 1402, 1456, 2182
PsyI	GACNNNGTC	1 cut(s)	2765
PvuII	CAGCTG	1 cut(s)	2552
RsaI	GTAC	8 cut(s)	265, 1203, 1712, 1791, 2106, 2208, 2389, 2829
RsaNI	GTAC	8 cut(s)	264, 1202, 1711, 1790, 2105, 2207, 2388, 2828
SacI	GAGCTC	1 cut(s)	2123
SaqAI	TTAA	8 cut(s)	669, 1212, 1758, 2171, 2264, 2406, 2568, 2843
SatI	GCNGC	7 cut(s)	20, 732, 2200, 2550, 2553, 2670, 2713
Sau96I	GGNCC	5 cut(s)	181, 206, 343, 892, 1598
SchI	GAGTC	1 cut(s)	955
ScrFI	CCNGG	2 cut(s)	1384, 2241
SduI	GDGCHC	3 cut(s)	1103, 1819, 2123
SfaNI	GCATC	7 cut(s)	257, 1025, 1900, 1960, 2450, 2488, 2530
SfcI	CTRYAG	4 cut(s)	1371, 2197, 2424, 2553
Sfr274I	CTCGAG	1 cut(s)	1316
SfuI	TTCGAA	1 cut(s)	2086
SinI	GGWCC	4 cut(s)	206, 343, 892, 1598
SlaI	CTCGAG	1 cut(s)	1316
SmlI	CTYRAG	4 cut(s)	353, 1187, 1316, 2801
SmoI	CTYRAG	4 cut(s)	353, 1187, 1316, 2801
SpeI	ACTAGT	2 cut(s)	1247, 1619
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	9 cut(s)	491, 784, 913, 1484, 1590, 2082, 2212, 2344, 2652
SseBI	AGGCCT	1 cut(s)	808
SsiI	CCGC	3 cut(s)	213, 969, 2806
SspMI	CTAG	7 cut(s)	750, 965, 1248, 1311, 1341, 1620, 1962
SstI	GAGCTC	1 cut(s)	2123
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	1382, 2239
StyI	CCWWGG	3 cut(s)	1154, 1334, 2410
TaaI	ACNGT	9 cut(s)	193, 268, 1117, 1557, 2026, 2046, 2392, 2660, 2827
TaiI	ACGT	1 cut(s)	2766
TaqI	TCGA	7 cut(s)	514, 562, 636, 1317, 1731, 2086, 2772
TasI	AATT	9 cut(s)	491, 784, 913, 1484, 1590, 2082, 2212, 2344, 2652
TatI	WGTACW	4 cut(s)	263, 2104, 2206, 2387
TfiI	GAWTC	4 cut(s)	578, 1183, 1502, 2729
Tru1I	TTAA	8 cut(s)	669, 1212, 1758, 2171, 2264, 2406, 2568, 2843
Tru9I	TTAA	8 cut(s)	669, 1212, 1758, 2171, 2264, 2406, 2568, 2843
TscAI	CASTG	5 cut(s)	528, 594, 1153, 1560, 2031
TseFI	GTSAC	3 cut(s)	882, 1243, 2273
TseI	GCWGC	7 cut(s)	19, 731, 2199, 2549, 2552, 2669, 2712
Tsp45I	GTSAC	3 cut(s)	882, 1243, 2273
TspGWI	ACGGA	2 cut(s)	847, 1277
TspRI	CASTG	5 cut(s)	528, 594, 1153, 1560, 2031
Tth111I	GACNNNGTC	1 cut(s)	2765
VpaK11BI	GGWCC	4 cut(s)	206, 343, 892, 1598
VspI	ATTAAT	1 cut(s)	1758
XagI	CCTNNNNNAGG	1 cut(s)	1468
XapI	RAATTY	5 cut(s)	913, 2082, 2212, 2344, 2652
XbaI	TCTAGA	1 cut(s)	1961
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1801
XhoI	CTCGAG	1 cut(s)	1316
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	7 cut(s)	750, 965, 1248, 1311, 1341, 1620, 1962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.