Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004469

Physical Location & Seq

Genomic Coordinates Forward (+)

55008651 .. 55017535

Gene Structure 8885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG399400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGATGATGAAGTTGTGCAGCGAGTTTTCCAAGAAGGAGGGCGAGACTATTTCCAACAGCAACCCTCCACTTCGTCTTCGTCTTCCTCTATTCTCCAATCACTTCCTCTCCATGTGTCTTTTGATCGCGGGTATTATTTGTTGGTAAAATCTATCCAAGAGCTTAGAGAGAAAAAAGAGGGCCTTGTTACAGTTGGCATAGGTGGTCCAAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTGTGTCAATGGAGAACTATCGTGATGGGATTGATGAAGGAAATGATCTCGGTTCAATAGATTTTGATATGCTGGTCCGAAATCTTGAGGATTTGGCAAAGGGTGAAGATACATTGGCTCCAGTTTTTGACTATCAAGAAAAGAAACGCGTTGGTTCAACAACAATACAGAGTGCTTCATCTGGAGTGGTAATAGTTGATGGCACCTATGCTTTGCATGCAAAATTACGCTCTTTGCTGGATATTCGAGTTGCAGTGGTTGGTGGTGTCCATTTCAGCCTTCTTTCCAAAGTTCGATATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGCATTTTCCCATTGTTTAGGAAGCACATCGAACCAGACCTTCATCATGCACAGATTAGGATTAACAACAGCTTTGTCTCATCATTTAGGGAGGCAATCTACAAGCTGAAATGTCGGAGTGAGGCAGCAGAGGGACATTTTGCTAGTGCCTTTCAAGAAAATGTTGCTCAAATAGATAATTTTATTGAGATGTATCTTAGGCCTCCTTCGGCAAGTGAAGAAGCACGGATAAATGATTGGATCAAGGTGCGTCAATCTGGTATAAGATATTATCTGTCACTTGGGGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCAAAAGCAGAGTTTGAGGTTGGAAGGATGACTCTAGGCGGATTACTGGCTTTGGGATACGCTGTGGTTGTTAGCTACAAAAGAGCATCTAAATCAGTCAATAATGGCAATGTTTCATTGTCCCTTGAAACCATTGATAGTCTTGGTGAGACATTCATGGTGCTGAGGGGCACAAATAGAAAAACAGTTGGAACAGAAGCATTGAAGATGGGTATCAGTGAGCCTTGGATCACTAAATCATATCTGGAAATGATTCTTGAGAGCAAAGGCGTACCTCGCCTTAATACACCACCTCTTTTGTCAAATACGCCTGTGACCAGTAATCAGGACAGAATGATTGTTGCACCAAAACCAATCCGTGTTCCTCCAAATCTTGTTACTAGACTCGAGGATCTATCTCAGCCATGGACTAGATCTCCAACAAAATCTACGATGGATCCTTTAGTGGCCACCTGGCATTTCATCTCATCAGATCCTTCCCAAGCTGATAGCTCAACCATAGATCCTTCCTCTTTCAGGGATGGCATGAAATTGGCTCCAATGCCTGATTCATATGACTTAGATAGGGGATTGCTTCTTGCTGTGCAAGCGATACAGGCACTGTTGGAGAATAAAGGTTTTCCGGTTATAGTTGGAATTGGGGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCCAATATAGTTGGCTGTGAAGTTGTTTCCCTTGAAAGATATTACAAATCTGAACAAGTAAAGGATTTCAAGTACGATGACTTCAGCTCGCTCGATCTATCTTTACTTTCAAAAAACATTAATGACATAAGGAGTGGTCAAAGGACAAAAGTACCCATGTTTGATTTGGAAACTGGTGCTCGGAGTGGGTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATCATTTTTGAAGGAGTTTATGCTCTGCATCCAGATATCCGAAAATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCGCATCTCATTTCTAGAGTTCAAAGGGATAAAAGTAAAGTGGGATGTTTTATGTCCCAGAATGAGATCATGATGACAGTGTTTCCAATGTTCCAACAGTTCATTGAACCCCATCTGGTTCATGCACATCTCAAAATTCGAAATGACTTTGATCCTGTACTTTCTCCGGAGAGCTCATTGTTTTTATTGAAGAGTAACAAGCAAGTGGCTTATCAAGATATTTTAAAAATACTGGATCCTGTAAAGTTCTGCAGCTCTGTACAGAATTTCATTGATTTATACTTGAAACTTCCTGGACTTCCTACCAATGAGCAGTTAACAGAGGGTGACTGCATTCGGGTCAGAATATGTGAGGGCAGATTTGCATTGCTGATACGGGAGCCTATACGAGAAGGGAATTTCATCATCCAACCTAAAGTGGATTTTGATATTAGCATTAGTACAGTTTCTGGACTTCTTAACCTTGGGTATCAAGCTGTAGCTTATATTGAAGCATCTGCTTTCATCTACCAAGATGGGAAGATTTTGGTTGAGGTCGATCATCTACAAGATGCTCCAAACCCTTACCTGCAAATCAAGGGGGTTGATAAAGATGCCGTGGCAGCTGCAGGGTCATTGCTTAAACTGGATGGTTCATATACTACCAAGAGTTATCTTCAAATAGTTCTGGAAAGATTACCAGAACTGGGAAGAGGCTCAGGTGGAATTCACAGTCAGCAAGCTGCAAGATTGCAGGAACTTGTGGAGTTCATTCAGTCTCAGGGCAGCAGTTCAGCTTCGGAATCCTCACCAATTAGGGAGGTTTCTCCAGTTGACGTGGTTATCGAAGATATGCAGTCAAGGATTAGAAGACTTGAGCGGTGGCATACAATCAATACGGTACTATGGACATTTTTAATGTCTGCGCTTGTTGGTTATTCGCTCTACCAAAGGAAGCGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

954

Amino Acids

106.08

Weight (kDa)

5.99

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	65 - 223	6.8e-07	Phosphoribulokinase / Uridine kinase family
PRK	PF00485	519 - 686	1.3e-17	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01460 AT2G01460 AT2G01460
fragaria_vesca	FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570 FvH4_4g32570
malus_domestica	MD13G1024500.v1.1 MD16G1027200.v1.1
prunus_persica	Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1 Prupe.1G326000_v2.0.a1
pyrus_communis	pycom16g02300
rosa_chinensis	RchiOBHm_Chr4g0441441
rosa_laevigata	RLG00000006092
rosa_multiflora	Rmu_sc0003360.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382310
rosa_rugosa	Rorug04G0333700
rosa_samantha	Rh4AG385200 Rh4BG399400 Rh4CG414400 Rh4DG392000
rosa_wichuraiana	Rw4G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2496
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	2779
AccII	CGCG	2 cut(s)	129, 417
AccIII	TCCGGA	1 cut(s)	2086
AciI	CCGC	3 cut(s)	129, 966, 2779
AcoI	YGGCCR	2 cut(s)	1374, 1611
AcsI	RAATTY	5 cut(s)	913, 2055, 2185, 2317, 2625
AcuI	CTGAAG	2 cut(s)	1678, 1842
AfaI	GTAC	8 cut(s)	265, 1200, 1685, 1764, 2079, 2181, 2362, 2802
AfiI	CCNNNNNNNGG	2 cut(s)	1443, 2606
AflIII	ACRYGT	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	1592
AjiI	CACGTC	1 cut(s)	2737
AjnI	CCWGG	2 cut(s)	1379, 2212
AjuI	GAANNNNNNNTTGG	2 cut(s)	1459, 1491
Alw21I	GWGCWC	2 cut(s)	1792, 2096
Alw26I	GTCTC	4 cut(s)	39, 688, 1070, 2682
AlwNI	CAGNNNCTG	2 cut(s)	1528, 2369
Ama87I	CYCGRG	1 cut(s)	1313
Aor13HI	TCCGGA	1 cut(s)	2086
AoxI	GGCC	5 cut(s)	181, 806, 926, 1374, 1611
ApeKI	GCWGC	7 cut(s)	19, 731, 2172, 2522, 2525, 2642, 2685
ApoI	RAATTY	5 cut(s)	913, 2055, 2185, 2317, 2625
ArsI	GACNNNNNNTTYG	1 cut(s)	2842
AseI	ATTAAT	1 cut(s)	1731
Asp700I	GAANNNNTTC	1 cut(s)	1179
AspLEI	GCGC	1 cut(s)	2827
AspS9I	GGNCC	5 cut(s)	181, 206, 343, 892, 1571
AsuHPI	GGTGA	4 cut(s)	383, 1085, 2258, 2700
AsuII	TTCGAA	1 cut(s)	2059
AvaI	CYCGRG	1 cut(s)	1313
AvaII	GGWCC	4 cut(s)	206, 343, 892, 1571
BaeGI	GKGCMC	1 cut(s)	1100
BaeI	ACNNNNGTAYC	2 cut(s)	1746, 1779
BalI	TGGCCA	2 cut(s)	1376, 1613
BamHI	GGATCC	2 cut(s)	1363, 2155
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	2096
BarI	GAAGNNNNNNTAC	2 cut(s)	1676, 1708
BbsI	GAAGAC	3 cut(s)	69, 75, 2776
Bbv12I	GWGCWC	2 cut(s)	1792, 2096
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	7 cut(s)	31, 743, 2184, 2512, 2534, 2629, 2697
BccI	CCATC	8 cut(s)	287, 461, 1129, 1354, 1442, 2040, 2429, 2543
BceAI	ACGGC	1 cut(s)	2501
BciT130I	CCWGG	2 cut(s)	1381, 2214
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	1836
BcoDI	GTCTC	4 cut(s)	39, 688, 1070, 2682
BcuI	ACTAGT	1 cut(s)	1592
BfaI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1593, 1935
BfmI	CTRYAG	3 cut(s)	2170, 2397, 2526
BfuAI	ACCTGC	1 cut(s)	2496
BfuI	GTATCC	1 cut(s)	977
BglII	AGATCT	1 cut(s)	1340
BisI	GCNGC	7 cut(s)	20, 732, 2173, 2523, 2526, 2643, 2686
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	7 cut(s)	21, 733, 2174, 2524, 2527, 2644, 2687
Bme1390I	CCNGG	2 cut(s)	1381, 2214
Bme18I	GGWCC	4 cut(s)	206, 343, 892, 1571
BmeT110I	CYCGRG	1 cut(s)	1313
BmgBI	CACGTC	1 cut(s)	2737
BmgT120I	GGNCC	5 cut(s)	181, 206, 343, 892, 1571
BmiI	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1464, 1572, 2157, 2301
BmrFI	CCNGG	2 cut(s)	1381, 2214
BmrI	ACTGGG	1 cut(s)	2615
BmsI	GCATC	7 cut(s)	257, 1022, 1873, 1933, 2423, 2461, 2503
BmuI	ACTGGG	1 cut(s)	2615
BpiI	GAAGAC	3 cut(s)	69, 75, 2776
BpmI	CTGGAG	3 cut(s)	372, 471, 2712
Bpu10I	CCTNAGC	2 cut(s)	1091, 2617
Bpu1102I	GCTNAGC	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	2059
BpuEI	CTTGAG	3 cut(s)	374, 1205, 2795
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaJI	CCNNGG	4 cut(s)	1151, 1331, 2383, 2517
BsaWI	WCCGGW	2 cut(s)	1549, 2086
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 370, 400, 1327, 1357
Bsc4I	CCNNNNNNNGG	2 cut(s)	1443, 2606
Bse1I	ACTGG	9 cut(s)	389, 594, 978, 1245, 1789, 2157, 2550, 2610, 2729
Bse3DI	GCAATG	3 cut(s)	1042, 2285, 2534
Bse8I	GATNNNNATC	1 cut(s)	1139
BseAI	TCCGGA	1 cut(s)	2086
BseBI	CCWGG	2 cut(s)	1381, 2214
BseDI	CCNNGG	4 cut(s)	1151, 1331, 2383, 2517
BseGI	GGATG	7 cut(s)	10, 960, 1453, 1864, 1970, 2325, 2554
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	2 cut(s)	1443, 2606
BseMI	GCAATG	3 cut(s)	1042, 2285, 2534
BseMII	CTCAG	4 cut(s)	1082, 1340, 2631, 2693
BseNI	ACTGG	9 cut(s)	389, 594, 978, 1245, 1789, 2157, 2550, 2610, 2729
BseSI	GKGCMC	1 cut(s)	1100
BseXI	GCAGC	7 cut(s)	31, 743, 2184, 2512, 2534, 2629, 2697
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	129, 417
BshFI	GGCC	5 cut(s)	183, 808, 928, 1376, 1613
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	1792, 2096
BsiHKCI	CYCGRG	1 cut(s)	1313
BsiSI	CCGG	2 cut(s)	1550, 2087
BslFI	GGGAC	4 cut(s)	753, 905, 1033, 1960
BslI	CCNNNNNNNGG	2 cut(s)	1443, 2606
BsmAI	GTCTC	4 cut(s)	39, 688, 1070, 2682
BsmFI	GGGAC	4 cut(s)	753, 905, 1033, 1960
BsmI	GAATGC	1 cut(s)	2253
BsnI	GGCC	5 cut(s)	183, 808, 928, 1376, 1613
BsoBI	CYCGRG	1 cut(s)	1313
Bsp119I	TTCGAA	1 cut(s)	2059
Bsp1286I	GDGCHC	3 cut(s)	1100, 1792, 2096
Bsp13I	TCCGGA	1 cut(s)	2086
Bsp1407I	TGTACA	1 cut(s)	2179
Bsp1720I	GCTNAGC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	1331
BspACI	CCGC	3 cut(s)	129, 966, 2779
BspANI	GGCC	5 cut(s)	183, 808, 928, 1376, 1613
BspCNI	CTCAG	4 cut(s)	1083, 1339, 2630, 2692
BspEI	TCCGGA	1 cut(s)	2086
BspFNI	CGCG	2 cut(s)	129, 417
BspHI	TCATGA	1 cut(s)	1989
BspLI	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1464, 1572, 2157, 2301
BspMAI	CTGCAG	2 cut(s)	2174, 2530
BspMI	ACCTGC	1 cut(s)	2496
BspT104I	TTCGAA	1 cut(s)	2059
BspT107I	GGYRCC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	2779
BsrDI	GCAATG	3 cut(s)	1042, 2285, 2534
BsrGI	TGTACA	1 cut(s)	2179
BsrI	ACTGG	9 cut(s)	389, 594, 978, 1245, 1789, 2157, 2550, 2610, 2729
BssECI	CCNNGG	4 cut(s)	1151, 1331, 2383, 2517
BssT1I	CCWWGG	3 cut(s)	1151, 1331, 2383
Bst2UI	CCWGG	2 cut(s)	1381, 2214
Bst4CI	ACNGT	9 cut(s)	193, 268, 1114, 1530, 1999, 2019, 2365, 2633, 2800
Bst6I	CTCTTC	2 cut(s)	2105, 2605
BstAUI	TGTACA	1 cut(s)	2179
BstBI	TTCGAA	1 cut(s)	2059
BstC8I	GCNNGC	4 cut(s)	486, 1515, 1700, 2640
BstDEI	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1486, 2617, 2679
BstDSI	CCRYGG	2 cut(s)	1331, 2517
BstENI	CCTNNNNNAGG	1 cut(s)	1441
BstF5I	GGATG	7 cut(s)	10, 960, 1453, 1864, 1970, 2325, 2554
BstFNI	CGCG	2 cut(s)	129, 417
BstHHI	GCGC	1 cut(s)	2827
BstMAI	GTCTC	4 cut(s)	39, 688, 1070, 2682
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1514, 1523, 2522
BstNI	CCWGG	2 cut(s)	1381, 2214
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	1379, 2212
BstSFI	CTRYAG	3 cut(s)	2170, 2397, 2526
BstSLI	GKGCMC	1 cut(s)	1100
BstUI	CGCG	2 cut(s)	129, 417
BstV1I	GCAGC	7 cut(s)	31, 743, 2184, 2512, 2534, 2629, 2697
BstV2I	GAAGAC	3 cut(s)	69, 75, 2776
BstX2I	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1429, 2155
BstYI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1429, 2155
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	5 cut(s)	183, 808, 928, 1376, 1613
BtgI	CCRYGG	2 cut(s)	1331, 2517
BtrI	CACGTC	1 cut(s)	2737
BtsCI	GGATG	7 cut(s)	10, 960, 1453, 1864, 1970, 2325, 2554
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	5 cut(s)	528, 587, 1150, 1526, 2004
BveI	ACCTGC	1 cut(s)	2496
Cac8I	GCNNGC	4 cut(s)	486, 1515, 1700, 2640
CaiI	CAGNNNCTG	2 cut(s)	1528, 2369
CciI	TCATGA	1 cut(s)	1989
CfoI	GCGC	1 cut(s)	2827
Cfr13I	GGNCC	5 cut(s)	181, 206, 343, 892, 1571
CseI	GACGC	2 cut(s)	845, 2846
Csp6I	GTAC	8 cut(s)	264, 1199, 1684, 1763, 2078, 2180, 2361, 2801
CspCI	CAANNNNNGTGG	2 cut(s)	1206, 1241
CviAII	CATG	9 cut(s)	113, 485, 653, 1084, 1332, 1453, 1768, 1990, 2042
CviQI	GTAC	8 cut(s)	264, 1199, 1684, 1763, 2078, 2180, 2361, 2801
DdeI	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1486, 2617, 2679
DraI	TTTAAA	1 cut(s)	2145
EaeI	YGGCCR	2 cut(s)	1374, 1611
Eam1104I	CTCTTC	2 cut(s)	2105, 2605
EarI	CTCTTC	2 cut(s)	2105, 2605
EciI	GGCGGA	1 cut(s)	981
Ecl136II	GAGCTC	1 cut(s)	2094
Eco130I	CCWWGG	3 cut(s)	1151, 1331, 2383
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	2096
Eco32I	GATATC	1 cut(s)	1873
Eco47I	GGWCC	4 cut(s)	206, 343, 892, 1571
Eco53kI	GAGCTC	1 cut(s)	2094
Eco57I	CTGAAG	2 cut(s)	1678, 1842
Eco88I	CYCGRG	1 cut(s)	1313
EcoICRI	GAGCTC	1 cut(s)	2094
EcoNI	CCTNNNNNAGG	1 cut(s)	1441
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	2625
EcoRII	CCWGG	2 cut(s)	1379, 2212
EcoRV	GATATC	1 cut(s)	1873
EcoT14I	CCWWGG	3 cut(s)	1151, 1331, 2383
EcoT38I	GRGCYC	1 cut(s)	2096
ErhI	CCWWGG	3 cut(s)	1151, 1331, 2383
FaeI	CATG	9 cut(s)	116, 488, 656, 1087, 1335, 1456, 1771, 1993, 2045
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	4 cut(s)	753, 905, 1033, 1960
FatI	CATG	9 cut(s)	112, 484, 652, 1083, 1331, 1452, 1767, 1989, 2041
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	1480
FbaI	TGATCA	1 cut(s)	1836
Fnu4HI	GCNGC	7 cut(s)	20, 732, 2173, 2523, 2526, 2643, 2686
FokI	GGATG	7 cut(s)	17, 967, 1460, 1851, 1977, 2312, 2561
FriOI	GRGCYC	1 cut(s)	2096
Fsp4HI	GCNGC	7 cut(s)	20, 732, 2173, 2523, 2526, 2643, 2686
FspBI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1593, 1935
GlaI	GCGC	1 cut(s)	2826
GluI	GCNGC	7 cut(s)	20, 732, 2173, 2523, 2526, 2643, 2686
GsuI	CTGGAG	3 cut(s)	372, 471, 2712
HaeIII	GGCC	5 cut(s)	183, 808, 928, 1376, 1613
HapII	CCGG	2 cut(s)	1550, 2087
HgaI	GACGC	2 cut(s)	845, 2846
HhaI	GCGC	1 cut(s)	2827
Hin1II	CATG	9 cut(s)	116, 488, 656, 1087, 1335, 1456, 1771, 1993, 2045
Hin6I	GCGC	1 cut(s)	2825
HinP1I	GCGC	1 cut(s)	2825
HincII	GTYRAC	3 cut(s)	907, 2238, 2734
HindII	GTYRAC	3 cut(s)	907, 2238, 2734
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	6 cut(s)	578, 958, 1180, 1311, 1475, 2702
HpaI	GTTAAC	1 cut(s)	2238
HpaII	CCGG	2 cut(s)	1550, 2087
HphI	GGTGA	4 cut(s)	383, 1085, 2258, 2700
Hpy166II	GTNNAC	4 cut(s)	587, 907, 2238, 2734
Hpy188I	TCNGA	9 cut(s)	347, 723, 1399, 1663, 1794, 1822, 1877, 2264, 2701
Hpy8I	GTNNAC	4 cut(s)	587, 907, 2238, 2734
HpyCH4III	ACNGT	9 cut(s)	193, 268, 1114, 1530, 1999, 2019, 2365, 2633, 2800
HpyCH4IV	ACGT	1 cut(s)	2736
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1514, 1523, 2522
HpyF3I	CTNAG	8 cut(s)	164, 232, 803, 1091, 1326, 1486, 2617, 2679
HpySE526I	ACGT	1 cut(s)	2736
Hsp92II	CATG	9 cut(s)	116, 488, 656, 1087, 1335, 1456, 1771, 1993, 2045
HspAI	GCGC	1 cut(s)	2825
Kpn2I	TCCGGA	1 cut(s)	2086
Ksp22I	TGATCA	1 cut(s)	1836
KspAI	GTTAAC	1 cut(s)	2238
LmnI	GCTCC	4 cut(s)	391, 1468, 2299, 2479
Lsp1109I	GCAGC	7 cut(s)	31, 743, 2184, 2512, 2534, 2629, 2697
LweI	GCATC	7 cut(s)	257, 1022, 1873, 1933, 2423, 2461, 2503
MaeI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1593, 1935
MaeII	ACGT	1 cut(s)	2736
MaeIII	GTNAC	6 cut(s)	187, 882, 1240, 1303, 2114, 2246
MbiI	CCGCTC	1 cut(s)	2779
MflI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1429, 2155
MhlI	GDGCHC	3 cut(s)	1100, 1792, 2096
MlsI	TGGCCA	2 cut(s)	1376, 1613
MluI	ACGCGT	1 cut(s)	415
MluNI	TGGCCA	2 cut(s)	1376, 1613
MlyI	GAGTC	2 cut(s)	952, 1305
Mox20I	TGGCCA	2 cut(s)	1376, 1613
MroI	TCCGGA	1 cut(s)	2086
MroXI	GAANNNNTTC	1 cut(s)	1179
MscI	TGGCCA	2 cut(s)	1376, 1613
MseI	TTAA	8 cut(s)	669, 1209, 1731, 2144, 2237, 2379, 2541, 2816
Msp20I	TGGCCA	2 cut(s)	1376, 1613
MspA1I	CMGCKG	1 cut(s)	2525
MspI	CCGG	2 cut(s)	1550, 2087
MspR9I	CCNGG	2 cut(s)	1381, 2214
Mva1269I	GAATGC	1 cut(s)	2253
MvaI	CCWGG	2 cut(s)	1381, 2214
MvnI	CGCG	2 cut(s)	129, 417
MwoI	GCNNNNNNNGC	5 cut(s)	485, 1203, 1514, 1523, 2522
NcoI	CCATGG	1 cut(s)	1331
NdeI	CATATG	1 cut(s)	1480
NlaIII	CATG	9 cut(s)	116, 488, 656, 1087, 1335, 1456, 1771, 1993, 2045
NlaIV	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1464, 1572, 2157, 2301
NmuCI	GTSAC	3 cut(s)	882, 1240, 2246
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	2059
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	1313
PagI	TCATGA	1 cut(s)	1989
PceI	AGGCCT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	1 cut(s)	2742
PctI	GAATGC	1 cut(s)	2253
PdmI	GAANNNNTTC	1 cut(s)	1179
PfeI	GAWTC	4 cut(s)	578, 1180, 1475, 2702
PfoI	TCCNGGA	1 cut(s)	2212
PkrI	GCNGC	7 cut(s)	21, 733, 2174, 2524, 2527, 2644, 2687
PleI	GAGTC	2 cut(s)	952, 1305
PpsI	GAGTC	2 cut(s)	952, 1305
PshBI	ATTAAT	1 cut(s)	1731
Psp124BI	GAGCTC	1 cut(s)	2096
Psp6I	CCWGG	2 cut(s)	1379, 2212
PspGI	CCWGG	2 cut(s)	1379, 2212
PspN4I	GGNNCC	8 cut(s)	387, 472, 893, 1365, 1464, 1572, 2157, 2301
PspPI	GGNCC	5 cut(s)	181, 206, 343, 892, 1571
PspXI	VCTCGAGB	1 cut(s)	1313
PstI	CTGCAG	2 cut(s)	2174, 2530
PstNI	CAGNNNCTG	2 cut(s)	1528, 2369
PsuI	RGATCY	6 cut(s)	1318, 1340, 1363, 1399, 1429, 2155
PvuII	CAGCTG	1 cut(s)	2525
RsaI	GTAC	8 cut(s)	265, 1200, 1685, 1764, 2079, 2181, 2362, 2802
RsaNI	GTAC	8 cut(s)	264, 1199, 1684, 1763, 2078, 2180, 2361, 2801
SacI	GAGCTC	1 cut(s)	2096
SaqAI	TTAA	8 cut(s)	669, 1209, 1731, 2144, 2237, 2379, 2541, 2816
SatI	GCNGC	7 cut(s)	20, 732, 2173, 2523, 2526, 2643, 2686
Sau96I	GGNCC	5 cut(s)	181, 206, 343, 892, 1571
SchI	GAGTC	2 cut(s)	952, 1305
ScrFI	CCNGG	2 cut(s)	1381, 2214
SduI	GDGCHC	3 cut(s)	1100, 1792, 2096
SfaNI	GCATC	7 cut(s)	257, 1022, 1873, 1933, 2423, 2461, 2503
SfcI	CTRYAG	3 cut(s)	2170, 2397, 2526
Sfr274I	CTCGAG	1 cut(s)	1313
SfuI	TTCGAA	1 cut(s)	2059
SinI	GGWCC	4 cut(s)	206, 343, 892, 1571
SlaI	CTCGAG	1 cut(s)	1313
SmlI	CTYRAG	4 cut(s)	353, 1184, 1313, 2774
SmoI	CTYRAG	4 cut(s)	353, 1184, 1313, 2774
SpeI	ACTAGT	1 cut(s)	1592
SphI	GCATGC	1 cut(s)	488
SseBI	AGGCCT	1 cut(s)	808
SsiI	CCGC	3 cut(s)	129, 966, 2779
SspMI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1593, 1935
SstI	GAGCTC	1 cut(s)	2096
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	1379, 2212
StyI	CCWWGG	3 cut(s)	1151, 1331, 2383
TaaI	ACNGT	9 cut(s)	193, 268, 1114, 1530, 1999, 2019, 2365, 2633, 2800
TaiI	ACGT	1 cut(s)	2739
TaqI	TCGA	8 cut(s)	514, 562, 636, 1314, 1704, 2059, 2457, 2745
TatI	WGTACW	4 cut(s)	263, 2077, 2179, 2360
TfiI	GAWTC	4 cut(s)	578, 1180, 1475, 2702
Tru1I	TTAA	8 cut(s)	669, 1209, 1731, 2144, 2237, 2379, 2541, 2816
Tru9I	TTAA	8 cut(s)	669, 1209, 1731, 2144, 2237, 2379, 2541, 2816
TscAI	CASTG	5 cut(s)	528, 594, 1150, 1533, 2004
TseFI	GTSAC	3 cut(s)	882, 1240, 2246
TseI	GCWGC	7 cut(s)	19, 731, 2172, 2522, 2525, 2642, 2685
Tsp45I	GTSAC	3 cut(s)	882, 1240, 2246
TspGWI	ACGGA	2 cut(s)	847, 1274
TspRI	CASTG	5 cut(s)	528, 594, 1150, 1533, 2004
VpaK11BI	GGWCC	4 cut(s)	206, 343, 892, 1571
VspI	ATTAAT	1 cut(s)	1731
XagI	CCTNNNNNAGG	1 cut(s)	1441
XapI	RAATTY	5 cut(s)	913, 2055, 2185, 2317, 2625
XbaI	TCTAGA	1 cut(s)	1934
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1774
XhoI	CTCGAG	1 cut(s)	1313
XmnI	GAANNNNTTC	1 cut(s)	1179
XspI	CTAG	6 cut(s)	750, 962, 1308, 1338, 1593, 1935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.