Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006301

Physical Location & Seq

Genomic Coordinates Reverse (-)

46628876 .. 46636804

Gene Structure 7929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGACGTGCGAAGTGGTGGTAATCGATGGCCCAAGTGGCCAGAAAACAGAGGGCCAAGATCTAGTGAAGAAGACCAAGAAGCGGAAGAGGGGTAGCAAGGGCCCAGAAGATTTAGGGGTTGAGGAGAAAGAGGCTAAGATTGGGTTGTTTCGCAAAGAGCTTGATGGGTTGTTTGGGTACTACAGGGAAGTGATGAGTGAGAGAGGGTGCTTAGATTTGAAGCAATGCGGTAACGATTTGAAATCGGTCATTGGGGCTTTGATGGAAGAGAGTGCGCTGCCATTGTCAAAGCTTGTTGACGAGGTCTTCCAGAAGCTCAAGAACGGAAATGATGCTTTCGGGGATGTGACGTGGGCCACCGTGAAGAAGATTGTGCTCTTGGTTGGCCAGAGAGAAATGTACGGCGTGCCTAATGCCGATGCCGATGTGTTAGAGGACGAATCTGAATCCTGTCTCTGGTGTTGGGAGACAAGGGATGTAAAGTTGATGCCAGCTTCCGTGCGTGGGGTATTGAATATTAGGCGTACCTGTCGAAGAAAGATCAATGAAAGGATTACTGCTGTTTCTGCAATGATAATGGCATTACAAAAGCCGGAGAGTGATCAAAGCTACATTCAGGAGCTGATGAAGGCATCTGAAATGATTGATAAAGCTTCCTGTGAGGCAAAGATTCGCTCATTAATGGATCGCCAATCACTGAAAAATAGTGCAGACCTGTATGTTAATGGGGTAAAAAAGCTAGCAAAAAGAGAGGAGAAACTGCAAATCAAACAAATGGAGCGAGATAAACGAGAGGCTGAGAAAGAGAAACAAAGATTGGAACGAGAGCGTCAAAAAGAAGAGCTGCAAAATGAGAAGGAGCAAAAGCGGCTGCTAGAGGAGTCGGAAAAAGTTGAAAAACGTCGGGAAAAAGAAGAATCTGAAATAAGGAAACTACGGAGGAAGCAGCAAGAAGATGCTGAAAAAGAACAACGGCGCCGGGAGAAGGAAGAAGCTAAACTGAAAGATCAACTTTCCATAAAAAAGCAAGCTTCAATCATGGATCGTTTTCTTAAAAGAACCAAACCCAGCCCTGCATGCCAGAATGACCAATTACCAACTAAAGGAACTGTATCTATTTCATCAAGTAAGAACGATGAAAATTTGTCTGAGGCAGTTACTCAGTCAATGGACCACACCCTTTCATCTAATGACAAATTTAGTGCCCAGGATATCCGCAGGTTGCACTTGTCTTCTTGGCGCCATTTAGGTCATTCTATTCGTTCAAACAGAAACCAAAGTTGGGGAATACGTCGGAGGCCTAAGAGTGAGCTATTTAAGGAACTCAAGCTGACAACCAGTAAAGAACTAGTTCATGGTGATGATAGCATGGAGAAACTTGTAGATAGATGGGGAGAACCTGTTAATGATGAGAGATCATGTCAAATTCTTGCTGAGGTCAAGAAATTCAAATCAAGAAAGCAGTTGTTACAATTTGATAAGAGCCATAGACCTGCATTTTATGGTATATGGGCCAAGAAAAGTCATGTTGTTCGACCGTGTCACCCTCTTAGGAAGGACCCAGACTTGGATTACGATATCGATAGTGATGAGGACTGGGAAGAGGAGGATCCTGGTGAGAGCCTCTCTGATTGCGATAAAGACGATGAAGGAGAAAGTTTAGAAGAGGGATGTTCAAAAGCTGATGATGAAGATGAAAGTGAAGATGGTTTTTTCGTCCCAGATGGCTATCTCTCAGAAAATGAGGGAGTAGAAGTGGACAGGATGGAAACTGATATTACATGTGAGGAGACCAAATCACCCAGTTGTAAGCAAGATTCAGAGAGCGAGAAATTCTCTTCTTTGCTTCGGCAGCAAAAGTATTTAGGAAATTTGACAGAACGTGCTCTTCAGAAAAATCAACCTTTAATCATATCAAATTTGATGCATGAGAAGGCATCTTTGCTAATGGCTCAAGATCTTAGTGGTACTCCTAAGCTGGAACAGATGTGCTTGCAAGCTCTGAGTATGCATGTGTTTCCTGGTGACTCATTGGTGGAGATAACAGTTGATGGCATGCAAGAAGAAGACCCAGATGTTTACCTTTTAAATGGCAAGTGCAGTATTAAATCAAGCTCTGCTGTGGCTGTTATATCGGAATTAGATCTGCCTGCAATAGTGTCTGTCATTCAGTCGTGCTCCCAAAGTATCAATAAGGTGTTACAAGCTTTGCAGCAGAAGTTCCCAGCTGCTTCAAAGACTCAGTTAAGGAATAAAGTGCGAGAGATATCAGATTTTGTGGATAACCATTGGCAGGTCAAGAGGGAAATTCTGGACAAAGTTGGCTTGTCAATGTCTCCTGAAAAGAGTGCTGGGCTGCCCAAAAGTATTACTGCCTTTTTTTCAAAAAGGTGCTTGCCACCCAATGGTAAAAGCATCAACCCTAATGAAACCTCACCTCAGCAAGCTGTGAAGCCAGGTTCTGCTGTTGAAGGGCAGCAAAGTTGCACATACGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

833

Amino Acids

94.79

Weight (kDa)

5.83

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1A_dimeriz	PF12253	488 - 553	1.3e-18	Chromatin assembly factor 1 subunit A dimerization domain
Cac1_C	PF21796	716 - 766	1.6e-20	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65470 AT1G65470
fragaria_vesca	FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081
malus_domestica	MD00G1017400.v1.1 MD12G1261700.v1.1
prunus_persica	Prupe.6G365000_v2.0.a1 Prupe.6G365000_v2.0.a1
pyrus_communis	pycom04g21970 pycom12g24210
rosa_chinensis	RchiOBHm_Chr3g0447421
rosa_laevigata	RLG00000026000
rosa_multiflora	Rmu_ssc0000473.1_g000021
rosa_roxburghii	Rroxscaffold_6G00425620
rosa_rugosa	Rorug02G0601300 Rorug02G0601400 Rorug02G0601500 Rorug02G0601600
rosa_samantha	Rh3AG001500 Rh3BG001200 Rh3CG001200 Rh3DG001400
rosa_wichuraiana	Rw3G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	1209, 1501, 2284
AccB1I	GGYRCC	2 cut(s)	975, 1239
AccB7I	CCANNNNNTGG	1 cut(s)	2405
AciI	CCGC	4 cut(s)	82, 228, 868, 1216
AclWI	GGATC	4 cut(s)	693, 1050, 1604, 1617
AcoI	YGGCCR	2 cut(s)	37, 385
AcsI	RAATTY	8 cut(s)	1141, 1196, 1425, 1445, 1832, 1870, 1918, 2307
AcuI	CTGAAG	1 cut(s)	1874
AcyI	GRCGYC	2 cut(s)	976, 1240
AfaI	GTAC	4 cut(s)	179, 401, 526, 1969
AfiI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 985, 1103, 1282, 1567, 2293, 2405
AflIII	ACRYGT	1 cut(s)	1781
AhlI	ACTAGT	1 cut(s)	1348
AjiI	CACGTC	2 cut(s)	6, 351
AjnI	CCWGG	4 cut(s)	1206, 1612, 2020, 2455
AjuI	GAANNNNNNNTTGG	4 cut(s)	800, 832, 1264, 1296
Alw21I	GWGCWC	3 cut(s)	378, 1888, 2180
Alw26I	GTCTC	5 cut(s)	458, 461, 1784, 2340, 2490
AlwI	GGATC	4 cut(s)	693, 1050, 1604, 1617
AlwNI	CAGNNNCTG	2 cut(s)	622, 2462
AoxI	GGCC	8 cut(s)	28, 37, 52, 100, 354, 385, 1298, 1512
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	9 cut(s)	277, 844, 871, 946, 1852, 2212, 2228, 2356, 2476
ApoI	RAATTY	8 cut(s)	1141, 1196, 1425, 1445, 1832, 1870, 1918, 2307
AseI	ATTAAT	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	1350
AspLEI	GCGC	3 cut(s)	277, 978, 1242
AspS9I	GGNCC	8 cut(s)	29, 52, 100, 101, 354, 1171, 1512, 1558
AsuC2I	CCSGG	1 cut(s)	980
AsuHPI	GGTGA	6 cut(s)	1370, 1535, 1628, 1791, 2036, 2427
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	2 cut(s)	1171, 1558
BaeGI	GKGCMC	2 cut(s)	104, 1207
BalI	TGGCCA	2 cut(s)	39, 387
BamHI	GGATCC	1 cut(s)	1609
BanI	GGYRCC	2 cut(s)	975, 1239
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	4 cut(s)	77, 298, 1224, 2073
Bbv12I	GWGCWC	3 cut(s)	378, 1888, 2180
BbvCI	CCTCAGC	2 cut(s)	1434, 2439
BbvI	GCAGC	9 cut(s)	264, 831, 858, 958, 1864, 2215, 2224, 2343, 2488
BccI	CCATC	8 cut(s)	20, 158, 256, 1383, 1700, 1718, 1759, 2045
BceAI	ACGGC	2 cut(s)	418, 989
BciT130I	CCWGG	4 cut(s)	1208, 1614, 2022, 2457
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	980
BcoDI	GTCTC	5 cut(s)	458, 461, 1784, 2340, 2490
BcuI	ACTAGT	1 cut(s)	1348
BfaI	CTAG	4 cut(s)	62, 740, 875, 1349
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	2 cut(s)	979, 1243
BfuAI	ACCTGC	3 cut(s)	1209, 1501, 2284
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	3 cut(s)	58, 1957, 2143
Bme1390I	CCNGG	5 cut(s)	980, 1208, 1614, 2022, 2457
Bme18I	GGWCC	2 cut(s)	1171, 1558
BmgBI	CACGTC	2 cut(s)	6, 351
BmgT120I	GGNCC	8 cut(s)	29, 52, 100, 101, 354, 1171, 1512, 1558
BmiI	GGNNCC	5 cut(s)	102, 977, 1241, 1560, 1611
BmrFI	CCNGG	5 cut(s)	980, 1208, 1614, 2022, 2457
BmrI	ACTGGG	2 cut(s)	1606, 1797
BmsI	GCATC	8 cut(s)	322, 409, 477, 641, 946, 1914, 1946, 2424
BmtI	GCTAGC	1 cut(s)	743
BmuI	ACTGGG	2 cut(s)	1606, 1797
BpiI	GAAGAC	4 cut(s)	77, 298, 1224, 2073
BplI	GAGNNNNNCTC	4 cut(s)	1610, 1642, 1820, 1852
Bpu10I	CCTNAGC	3 cut(s)	1434, 1974, 2439
BpuEI	CTTGAG	3 cut(s)	302, 1310, 1938
BpuMI	CCSGG	1 cut(s)	980
Bsa29I	ATCGAT	2 cut(s)	24, 1581
BsaBI	GATNNNNATC	1 cut(s)	1728
BsaHI	GRCGYC	2 cut(s)	976, 1240
BsaI	GGTCTC	1 cut(s)	1784
BsaJI	CCNNGG	1 cut(s)	1206
BsaXI	ACNNNNNCTCC	4 cut(s)	1386, 1416, 1740, 1770
Bsc4I	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 985, 1103, 1282, 1567, 2293, 2405
Bse1I	ACTGG	3 cut(s)	1338, 1601, 1803
Bse3DI	GCAATG	2 cut(s)	230, 576
Bse8I	GATNNNNATC	1 cut(s)	1728
BseBI	CCWGG	4 cut(s)	1208, 1614, 2022, 2457
BseCI	ATCGAT	2 cut(s)	24, 1581
BseDI	CCNNGG	1 cut(s)	1206
BseGI	GGATG	4 cut(s)	349, 481, 1676, 1770
BseJI	GATNNNNATC	1 cut(s)	1728
BseLI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 985, 1103, 1282, 1567, 2293, 2405
BseMI	GCAATG	2 cut(s)	230, 576
BseMII	CTCAG	8 cut(s)	789, 1140, 1175, 1425, 1749, 1994, 2255, 2453
BseNI	ACTGG	3 cut(s)	1338, 1601, 1803
BseRI	GAGGAG	5 cut(s)	137, 767, 893, 1619, 1802
BseSI	GKGCMC	2 cut(s)	104, 1207
BseXI	GCAGC	9 cut(s)	264, 831, 858, 958, 1864, 2215, 2224, 2343, 2488
BseYI	CCCAGC	3 cut(s)	1067, 2224, 2351
BsgI	GTGCAG	2 cut(s)	729, 2119
Bsh1285I	CGRYCG	1 cut(s)	1538
BshFI	GGCC	8 cut(s)	30, 39, 54, 102, 356, 387, 1300, 1514
BshNI	GGYRCC	2 cut(s)	975, 1239
BshVI	ATCGAT	2 cut(s)	24, 1581
BsiEI	CGRYCG	1 cut(s)	1538
BsiHKAI	GWGCWC	3 cut(s)	378, 1888, 2180
BsiSI	CCGG	2 cut(s)	593, 979
BslFI	GGGAC	1 cut(s)	1703
BslI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 985, 1103, 1282, 1567, 2293, 2405
BsmAI	GTCTC	5 cut(s)	458, 461, 1784, 2340, 2490
BsmFI	GGGAC	1 cut(s)	1703
BsnI	GGCC	8 cut(s)	30, 39, 54, 102, 356, 387, 1300, 1514
Bso31I	GGTCTC	1 cut(s)	1784
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	5 cut(s)	104, 378, 1207, 1888, 2180
BspACI	CCGC	4 cut(s)	82, 228, 868, 1216
BspANI	GGCC	8 cut(s)	30, 39, 54, 102, 356, 387, 1300, 1514
BspCNI	CTCAG	8 cut(s)	790, 1141, 1174, 1426, 1748, 1995, 2254, 2452
BspDI	ATCGAT	2 cut(s)	24, 1581
BspLI	GGNNCC	5 cut(s)	102, 977, 1241, 1560, 1611
BspMI	ACCTGC	3 cut(s)	1209, 1501, 2284
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	4 cut(s)	693, 1050, 1604, 1617
BspQI	GCTCTTC	2 cut(s)	834, 1893
BspT107I	GGYRCC	2 cut(s)	975, 1239
BspTNI	GGTCTC	1 cut(s)	1784
BsrDI	GCAATG	2 cut(s)	230, 576
BsrI	ACTGG	3 cut(s)	1338, 1601, 1803
BssECI	CCNNGG	1 cut(s)	1206
BssNI	GRCGYC	2 cut(s)	976, 1240
Bst2UI	CCWGG	4 cut(s)	1208, 1614, 2022, 2457
Bst4CI	ACNGT	4 cut(s)	361, 1111, 1539, 2047
Bst6I	CTCTTC	7 cut(s)	80, 261, 834, 1596, 1659, 1843, 1893
BstACI	GRCGYC	2 cut(s)	976, 1240
BstF5I	GGATG	4 cut(s)	349, 481, 1676, 1770
BstH2I	RGCGCY	2 cut(s)	979, 1243
BstHHI	GCGC	3 cut(s)	277, 978, 1242
BstMAI	GTCTC	5 cut(s)	458, 461, 1784, 2340, 2490
BstMCI	CGRYCG	1 cut(s)	1538
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 566, 868, 1077, 1852
BstNI	CCWGG	4 cut(s)	1208, 1614, 2022, 2457
BstNSI	RCATGY	4 cut(s)	1080, 1785, 2015, 2059
BstSCI	CCNGG	5 cut(s)	978, 1206, 1612, 2020, 2455
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	104, 1207
BstV1I	GCAGC	9 cut(s)	264, 831, 858, 958, 1864, 2215, 2224, 2343, 2488
BstV2I	GAAGAC	4 cut(s)	77, 298, 1224, 2073
BstX2I	RGATCY	4 cut(s)	58, 1609, 1957, 2143
BstYI	RGATCY	4 cut(s)	58, 1609, 1957, 2143
Bsu15I	ATCGAT	2 cut(s)	24, 1581
BsuRI	GGCC	8 cut(s)	30, 39, 54, 102, 356, 387, 1300, 1514
BsuTUI	ATCGAT	2 cut(s)	24, 1581
BtrI	CACGTC	2 cut(s)	6, 351
BtsCI	GGATG	4 cut(s)	349, 481, 1676, 1770
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	3 cut(s)	1209, 1501, 2284
CaiI	CAGNNNCTG	2 cut(s)	622, 2462
CfoI	GCGC	3 cut(s)	277, 978, 1242
Cfr13I	GGNCC	8 cut(s)	29, 52, 100, 101, 354, 1171, 1512, 1558
ClaI	ATCGAT	2 cut(s)	24, 1581
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	4 cut(s)	178, 400, 525, 1968
CviQI	GTAC	4 cut(s)	178, 400, 525, 1968
DinI	GGCGCC	2 cut(s)	977, 1241
DraI	TTTAAA	1 cut(s)	2088
EaeI	YGGCCR	2 cut(s)	37, 385
Eam1104I	CTCTTC	7 cut(s)	80, 261, 834, 1596, 1659, 1843, 1893
EarI	CTCTTC	7 cut(s)	80, 261, 834, 1596, 1659, 1843, 1893
Eco147I	AGGCCT	1 cut(s)	1300
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	1784
Eco32I	GATATC	3 cut(s)	1213, 1579, 2268
Eco47I	GGWCC	2 cut(s)	1171, 1558
Eco57I	CTGAAG	1 cut(s)	1874
EcoO109I	RGGNCCY	2 cut(s)	100, 1558
EcoRII	CCWGG	4 cut(s)	1206, 1612, 2020, 2455
EcoRV	GATATC	3 cut(s)	1213, 1579, 2268
EcoT22I	ATGCAT	2 cut(s)	1929, 2013
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	2 cut(s)	977, 1241
EheI	GGCGCC	2 cut(s)	977, 1241
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FaqI	GGGAC	1 cut(s)	1703
FbaI	TGATCA	1 cut(s)	601
FokI	GGATG	4 cut(s)	356, 488, 1683, 1777
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	4 cut(s)	62, 740, 875, 1349
GlaI	GCGC	3 cut(s)	276, 977, 1241
GsaI	CCCAGC	3 cut(s)	1071, 2228, 2355
HaeII	RGCGCY	2 cut(s)	979, 1243
HaeIII	GGCC	8 cut(s)	30, 39, 54, 102, 356, 387, 1300, 1514
HapII	CCGG	2 cut(s)	593, 979
HgaI	GACGC	1 cut(s)	818
HhaI	GCGC	3 cut(s)	277, 978, 1242
Hin1I	GRCGYC	2 cut(s)	976, 1240
Hin6I	GCGC	3 cut(s)	275, 976, 1240
HinP1I	GCGC	3 cut(s)	275, 976, 1240
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	4 cut(s)	290, 651, 1029, 2205
HinfI	GANTC	8 cut(s)	440, 446, 670, 881, 917, 1817, 2027, 2239
HpaII	CCGG	2 cut(s)	593, 979
HphI	GGTGA	6 cut(s)	1370, 1535, 1628, 1791, 2036, 2427
Hpy166II	GTNNAC	3 cut(s)	298, 1759, 2080
Hpy8I	GTNNAC	3 cut(s)	298, 1759, 2080
Hpy99I	CGWCG	2 cut(s)	906, 1296
HpyAV	CCTTC	7 cut(s)	622, 850, 979, 1549, 1643, 1927, 2465
HpyCH4III	ACNGT	4 cut(s)	361, 1111, 1539, 2047
HpyCH4IV	ACGT	5 cut(s)	5, 350, 901, 1291, 1882
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 566, 868, 1077, 1852
HpySE526I	ACGT	5 cut(s)	5, 350, 901, 1291, 1882
Hsp92I	GRCGYC	2 cut(s)	976, 1240
HspAI	GCGC	3 cut(s)	275, 976, 1240
KasI	GGCGCC	2 cut(s)	975, 1239
Ksp22I	TGATCA	1 cut(s)	601
LguI	GCTCTTC	2 cut(s)	834, 1893
LmnI	GCTCC	4 cut(s)	619, 778, 859, 2183
Lsp1109I	GCAGC	9 cut(s)	264, 831, 858, 958, 1864, 2215, 2224, 2343, 2488
LweI	GCATC	8 cut(s)	322, 409, 477, 641, 946, 1914, 1946, 2424
MaeI	CTAG	4 cut(s)	62, 740, 875, 1349
MaeII	ACGT	5 cut(s)	5, 350, 901, 1291, 1882
MaeIII	GTNAC	7 cut(s)	230, 346, 1156, 1467, 1541, 2024, 2199
MflI	RGATCY	4 cut(s)	58, 1609, 1957, 2143
MhlI	GDGCHC	5 cut(s)	104, 378, 1207, 1888, 2180
MlsI	TGGCCA	2 cut(s)	39, 387
MluNI	TGGCCA	2 cut(s)	39, 387
Mly113I	GGCGCC	2 cut(s)	976, 1240
MlyI	GAGTC	3 cut(s)	890, 2021, 2233
MmeI	TCCRAC	2 cut(s)	864, 1274
Mox20I	TGGCCA	2 cut(s)	39, 387
Mph1103I	ATGCAT	2 cut(s)	1929, 2013
MroXI	GAANNNNTTC	1 cut(s)	1350
MscI	TGGCCA	2 cut(s)	39, 387
MseI	TTAA	9 cut(s)	680, 723, 1053, 1317, 1404, 1907, 2087, 2106, 2246
MslI	CAYNNNNRTG	1 cut(s)	1359
Msp20I	TGGCCA	2 cut(s)	39, 387
MspA1I	CMGCKG	1 cut(s)	2228
MspI	CCGG	2 cut(s)	593, 979
MspR9I	CCNGG	5 cut(s)	980, 1208, 1614, 2022, 2457
MvaI	CCWGG	4 cut(s)	1208, 1614, 2022, 2457
MwoI	GCNNNNNNNGC	5 cut(s)	36, 566, 868, 1077, 1852
NarI	GGCGCC	2 cut(s)	976, 1240
NciI	CCSGG	1 cut(s)	980
NheI	GCTAGC	1 cut(s)	739
NlaIV	GGNNCC	5 cut(s)	102, 977, 1241, 1560, 1611
NmuCI	GTSAC	3 cut(s)	346, 1541, 2024
NsiI	ATGCAT	2 cut(s)	1929, 2013
NspI	RCATGY	4 cut(s)	1080, 1785, 2015, 2059
PaeI	GCATGC	2 cut(s)	1080, 2059
PceI	AGGCCT	1 cut(s)	1300
PciI	ACATGT	1 cut(s)	1781
PciSI	GCTCTTC	2 cut(s)	834, 1893
PdmI	GAANNNNTTC	1 cut(s)	1350
PfeI	GAWTC	5 cut(s)	440, 446, 670, 917, 1817
PflFI	GACNNNGTC	2 cut(s)	302, 1539
PflMI	CCANNNNNTGG	1 cut(s)	2405
PleI	GAGTC	3 cut(s)	889, 2021, 2233
PluTI	GGCGCC	2 cut(s)	979, 1243
PpsI	GAGTC	3 cut(s)	889, 2021, 2233
PpuMI	RGGWCCY	1 cut(s)	1558
PscI	ACATGT	1 cut(s)	1781
PshBI	ATTAAT	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	1558
Psp6I	CCWGG	4 cut(s)	1206, 1612, 2020, 2455
PspFI	CCCAGC	3 cut(s)	1067, 2224, 2351
PspGI	CCWGG	4 cut(s)	1206, 1612, 2020, 2455
PspN4I	GGNNCC	5 cut(s)	102, 977, 1241, 1560, 1611
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	8 cut(s)	29, 52, 100, 101, 354, 1171, 1512, 1558
PspPPI	RGGWCCY	1 cut(s)	1558
PstNI	CAGNNNCTG	2 cut(s)	622, 2462
PsuI	RGATCY	4 cut(s)	58, 1609, 1957, 2143
PsyI	GACNNNGTC	2 cut(s)	302, 1539
PvuII	CAGCTG	1 cut(s)	2228
RsaI	GTAC	4 cut(s)	179, 401, 526, 1969
RsaNI	GTAC	4 cut(s)	178, 400, 525, 1968
RseI	CAYNNNNRTG	1 cut(s)	1359
SapI	GCTCTTC	2 cut(s)	834, 1893
SaqAI	TTAA	9 cut(s)	680, 723, 1053, 1317, 1404, 1907, 2087, 2106, 2246
Sau96I	GGNCC	8 cut(s)	29, 52, 100, 101, 354, 1171, 1512, 1558
SchI	GAGTC	3 cut(s)	890, 2021, 2233
ScrFI	CCNGG	5 cut(s)	980, 1208, 1614, 2022, 2457
SduI	GDGCHC	5 cut(s)	104, 378, 1207, 1888, 2180
SfaNI	GCATC	8 cut(s)	322, 409, 477, 641, 946, 1914, 1946, 2424
SfcI	CTRYAG	1 cut(s)	181
SfiI	GGCCNNNNNGGCC	1 cut(s)	36
SfoI	GGCGCC	2 cut(s)	977, 1241
SinI	GGWCC	2 cut(s)	1171, 1558
SmiMI	CAYNNNNRTG	1 cut(s)	1359
SmlI	CTYRAG	3 cut(s)	317, 1325, 1953
SmoI	CTYRAG	3 cut(s)	317, 1325, 1953
SpeI	ACTAGT	1 cut(s)	1348
SphI	GCATGC	2 cut(s)	1080, 2059
SseBI	AGGCCT	1 cut(s)	1300
SsiI	CCGC	4 cut(s)	82, 228, 868, 1216
SspDI	GGCGCC	2 cut(s)	975, 1239
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	62, 740, 875, 1349
StuI	AGGCCT	1 cut(s)	1300
StyD4I	CCNGG	5 cut(s)	978, 1206, 1612, 2020, 2455
TaaI	ACNGT	4 cut(s)	361, 1111, 1539, 2047
TaiI	ACGT	5 cut(s)	8, 353, 904, 1294, 1885
TaqI	TCGA	4 cut(s)	24, 532, 1534, 1581
TaqII	GACCGA	1 cut(s)	235
TauI	GCSGC	1 cut(s)	871
TfiI	GAWTC	5 cut(s)	440, 446, 670, 917, 1817
Tru1I	TTAA	9 cut(s)	680, 723, 1053, 1317, 1404, 1907, 2087, 2106, 2246
Tru9I	TTAA	9 cut(s)	680, 723, 1053, 1317, 1404, 1907, 2087, 2106, 2246
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	3 cut(s)	346, 1541, 2024
TseI	GCWGC	9 cut(s)	277, 844, 871, 946, 1852, 2212, 2228, 2356, 2476
Tsp45I	GTSAC	3 cut(s)	346, 1541, 2024
TspGWI	ACGGA	3 cut(s)	339, 487, 952
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	2 cut(s)	302, 1539
Van91I	CCANNNNNTGG	1 cut(s)	2405
VpaK11BI	GGWCC	2 cut(s)	1171, 1558
VspI	ATTAAT	1 cut(s)	680
XapI	RAATTY	8 cut(s)	1141, 1196, 1425, 1445, 1832, 1870, 1918, 2307
XceI	RCATGY	4 cut(s)	1080, 1785, 2015, 2059
XmnI	GAANNNNTTC	1 cut(s)	1350
XspI	CTAG	4 cut(s)	62, 740, 875, 1349
Zsp2I	ATGCAT	2 cut(s)	1929, 2013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.