Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006301

Physical Location & Seq

Genomic Coordinates Forward (+)

72037479 .. 72038115

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0601500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGACACCTTCTCCATCCCAAGAGCGATCGGCGGTTTCCGGCGCCAATCAACCATTCCCGGTGGAGCTTGACTCGCCAGAAAGATGATTGGCTTGCGCGGCACGCTAAAATGGGCATTTGCTATGATGATTGGATGAATCACCCACGGCCTTTTTTGCTGCATAATTTCACTTTGGAATCCTCTCTCCTTAGAGGTTCCAATCATATGCAGGTTCCGCGTCAGATCGAACTGAAAAGAAGGTGGAAAGATCACCATATGGGATTTGGGACAGTGGACACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

95

Amino Acids

11.42

Weight (kDa)

10.35

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65470 AT1G65470
fragaria_vesca	FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081
malus_domestica	MD00G1017400.v1.1 MD12G1261700.v1.1
prunus_persica	Prupe.6G365000_v2.0.a1 Prupe.6G365000_v2.0.a1
pyrus_communis	pycom04g21970 pycom12g24210
rosa_chinensis	RchiOBHm_Chr3g0447421
rosa_laevigata	RLG00000026000
rosa_multiflora	Rmu_ssc0000473.1_g000021
rosa_roxburghii	Rroxscaffold_6G00425620
rosa_rugosa	Rorug02G0601300 Rorug02G0601400 Rorug02G0601500 Rorug02G0601600
rosa_samantha	Rh3AG001500 Rh3BG001200 Rh3CG001200 Rh3DG001400
rosa_wichuraiana	Rw3G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	2 cut(s)	100, 220
AciI	CCGC	3 cut(s)	34, 100, 218
AcyI	GRCGYC	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	46, 100
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	134, 245
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	101, 161
BlsI	GCNGC	2 cut(s)	102, 162
Bme1390I	CCNGG	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	45, 199, 216
BmrFI	CCNGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	146
BsaXI	ACNNNNNCTCC	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	16, 141
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	2 cut(s)	100, 220
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	41, 61
BslFI	GGGAC	2 cut(s)	18, 283
BsmFI	GGGAC	2 cut(s)	18, 283
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	28, 225, 250
BspACI	CCGC	3 cut(s)	34, 100, 218
BspANI	GGCC	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	100, 220
BspLI	GGNNCC	3 cut(s)	45, 199, 216
BspMI	ACCTGC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	3 cut(s)	28, 225, 250
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	96, 105
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	16, 141
BstFNI	CGCG	2 cut(s)	100, 220
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 100
BstKTI	GATC	3 cut(s)	31, 228, 253
BstMBI	GATC	3 cut(s)	28, 225, 250
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 100, 104, 157, 217
BstSCI	CCNGG	1 cut(s)	59
BstUI	CGCG	2 cut(s)	100, 220
BstV1I	GCAGC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	16, 141
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	96, 105
CfoI	GCGC	2 cut(s)	46, 100
CseI	GACGC	1 cut(s)	209
CviJI	RGCY	3 cut(s)	69, 94, 151
CviKI_1	RGCY	3 cut(s)	69, 94, 151
DdeI	CTNAG	1 cut(s)	191
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	3 cut(s)	30, 227, 252
DpnII	GATC	3 cut(s)	28, 225, 250
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
FaiI	YATR	6 cut(s)	126, 165, 207, 209, 258, 260
FaqI	GGGAC	2 cut(s)	18, 283
FauNDI	CATATG	2 cut(s)	207, 258
Fnu4HI	GCNGC	2 cut(s)	101, 161
FokI	GGATG	2 cut(s)	3, 148
Fsp4HI	GCNGC	2 cut(s)	101, 161
GlaI	GCGC	2 cut(s)	45, 99
GluI	GCNGC	2 cut(s)	101, 161
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	41, 61
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	46, 100
Hin1I	GRCGYC	1 cut(s)	44
Hin6I	GCGC	2 cut(s)	44, 98
HinP1I	GCGC	2 cut(s)	44, 98
HinfI	GANTC	3 cut(s)	73, 139, 179
HpaII	CCGG	2 cut(s)	41, 61
HphI	GGTGA	2 cut(s)	134, 245
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	20, 234
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	163, 211
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 100, 104, 157, 217
HpyF3I	CTNAG	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	44
HspAI	GCGC	2 cut(s)	44, 98
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	28, 225, 250
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	54, 74, 92, 197
Lsp1109I	GCAGC	1 cut(s)	147
MalI	GATC	3 cut(s)	30, 227, 252
MboI	GATC	3 cut(s)	28, 225, 250
MluCI	AATT	1 cut(s)	166
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	188, 193
MspI	CCGG	2 cut(s)	41, 61
MspR9I	CCNGG	1 cut(s)	61
MvnI	CGCG	2 cut(s)	100, 220
MwoI	GCNNNNNNNGC	5 cut(s)	75, 100, 104, 157, 217
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	2 cut(s)	207, 258
NdeII	GATC	3 cut(s)	28, 225, 250
NlaIV	GGNNCC	3 cut(s)	45, 199, 216
PfeI	GAWTC	2 cut(s)	139, 179
PkrI	GCNGC	2 cut(s)	102, 162
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	67
PspN4I	GGNNCC	3 cut(s)	45, 199, 216
PvuI	CGATCG	1 cut(s)	31
SatI	GCNGC	2 cut(s)	101, 161
Sau3AI	GATC	3 cut(s)	28, 225, 250
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	5 cut(s)	12, 71, 199, 216, 245
SfoI	GGCGCC	1 cut(s)	45
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	34, 100, 218
SspDI	GGCGCC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	139, 179
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.