Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006301

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGACGTGCGAAGTGGTGGTAATCGATGGCCCAAGTGGCCAGAAAACAAAGGGTCAAGATCTAGTGAAGAAGACCAAGAAGCGGAAGAGGGGTGGCAAGGGCCCAGAAGATTTAGGGGTTGAGGAGAAAGAGGCTAAGATTGGGTTGCTTCGCAAAGAGCTTGATGGGTTGTTTGGGTACTACAGGGAAGTGATGAGTGAGAGAGGGTGCTTAGATTTGAAGCAATGTGGTAACGATTTGAAATCGGTCATTGGGGCTTTGATGGAAGAGAGTGCGCTGCCATTGTCAAAGCTTGTTGACGAGGTCTTCCAGAAGCTCAAGAACGGAAATGATGCTTTCGGGGACGTGACGTTGGCCACCGTGAAGAAGATTGTGCTCTTGGTTGGCCAGAGAGAAATGTACGGCGTGCCTAATGCCGATGCCGATGTGTTGGAGGACGAATCTGAATCCTGTCTCTGGTGTTGGGAGACAAGGGATGTAAAGTTGATGCCAGCTTCCGTGCGTGGGGTATTGAATATTAGGCGTACCTGTCGAAGAAAGATCAATGAAAGGATTACTGCTGTTTCTGCAATGATAATGGCATTACAAAAGCCGGAGAGTGATCAAAGCTACATTCAGGAGCTGATGAAGGCATCGGAAATGATTGATAAAGCTTCCTGTGAGGCAAAGATTCGCTCATTAATGGATCGCCTATCACTGAAAAATAGTGCAGATATGGTAAAAAAGCAAGCAAAAAGAGAGGAGAAACTGCAAATCAAACAAATGGAGCGAGATAAACGAGAGGCTGAGAAAGAGAAACAAAGATTGGAACGTGAGCGTCAAAAAGAAGAGCTGCAAAATGAGAAGGAGCAAAAGCGGCTGCTAGAGGAGTCAGAAAAAGTTGAAAAGCGTCGGGAAAAAGAAGAATATGAAATAAGGAAACTACGGAGGAAGCAGCAAGAAGATGCTGAAAAAGAACAACGGCGCCGGGAGAAGGAAGAAGCTAAACTGAAAGATCAACTTTCCATAAAAAAGCAAGCTTCAATCATGGATCGTTTTCTTAAAAGAACCAAACCCAGCCCTGCATGCCAGAATGACCAATTACCAACTAAAGGAACTGTGTCTATTTCATCAAGTAAGAACGATGAAAATTTGTCTGAGGCAGTTACTCAGTCAATGGACCACACCCTTTCATCTAGTGACAAATTTAGTGCCCAGGATATCCGCAGGTCGCACTTGTCTTCTTGGCGCCATTTAGGTCATTCTATTCGTTCAAACAGAAACCAAAGTTGGGGAATACGTCGGAAGCCTAAGGATAGATGGGGAGAACCTGTTAATGATGAGAGATCATGTCAAATTCTTGCTGAGGTCAAGAAATTCAAATCAAGAAAGCAGTTGTTACAATTTGATAAGAGCCATAGACCTGCATTTTATGGTATATGGTCCAAGAAAAGTCATGTTGTTCGACCGTGTCACCCTCTTAGGAAGGACCCAGACTTGGATTACGATATCGATAGTGATGAGGACTGGGAAGAGGAGGATCCTGGTGAGAGCCTCTCTGATTGCGATAAAGACGATGAAGGAGAAAGTTTAGAAGAGGGATGTTCAAAAGCTGATGATGAAGATGAAAGTGAAGATGGTTTTTTCGTACCAGATGGCTATCTCTCAGAAAATGAGGGAGTAGAAGTGGACAGGATGGAAACTGATATCACATGTGAGGAGACCAAATCACCCAGTTGTAAGCAAGATTCAGAGAGCGAGAAATTCTCTTCTTTGCTTCGGCAGCAAAAGTATTTAGGAAATTTGACAGAACGTGCTCTTCAGAAAAATCAACCTTTAATCATATCAAATTTGATGCATGAGAAGGCGTCTTTGCTAATGGCTCAAGATCTTAGCAGTACTCCTAAGCTGGAACAGATGTGCTTGCAAGCTCTGAGTATGCATGTGTTTCCTGGTGACTCATTGGTGGAGATAACAGTTGATGGCATGCAAGAAGAAGACCCAGAGGTTTGCCTTTTAAATGGCAAGTGCAGTATTAAATCAAGCTCTGCTGTCGCTGTTATACCGGAATTAGATCTGCCTGCAATAGTGTCTGTCATTCAGTCGTGCTCCCAAAGTATCAATAAGGTGTTACAAGCTCTGCAGCAGAAGTTCCCAGCTGTTTCAAAGACTCAGTTAAGGAATAAAGTGCGAGAGATATCAGATTTTGTGGATAACCATTGGCAGGTCAAGAGGGAAATTCTGGACAAAGTTGGTTTGTCAATGTCTCCTGAAAAGAGTGCTGGGCTGCCCAAAAGTATTACTGCCTTTTTTTCAAAAAGATGCTTGCCACCAAATGGTAAAAGCATCAACCCTAATGAAACCTCACCTCAGCAAGCTGTGAAGCCAGGTTCTGCTGTTGAAGGGCAGCAAAGTTGCACATACGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

803

Amino Acids

91.31

Weight (kDa)

6.06

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1A_dimeriz	PF12253	458 - 523	6.6e-19	Chromatin assembly factor 1 subunit A dimerization domain
Cac1_C	PF21796	686 - 736	2.5e-21	Chromatin assembly factor 1 subunit Cac1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65470 AT1G65470
fragaria_vesca	FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081
malus_domestica	MD00G1017400.v1.1 MD12G1261700.v1.1
prunus_persica	Prupe.6G365000_v2.0.a1 Prupe.6G365000_v2.0.a1
pyrus_communis	pycom04g21970 pycom12g24210
rosa_chinensis	RchiOBHm_Chr3g0447421
rosa_laevigata	RLG00000026000
rosa_multiflora	Rmu_ssc0000473.1_g000021
rosa_roxburghii	Rroxscaffold_6G00425620
rosa_rugosa	Rorug02G0601300 Rorug02G0601400 Rorug02G0601500 Rorug02G0601600
rosa_samantha	Rh3AG001500 Rh3BG001200 Rh3CG001200 Rh3DG001400
rosa_wichuraiana	Rw3G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	1197, 1411, 2194
AccB1I	GGYRCC	2 cut(s)	963, 1227
AccB7I	CCANNNNNTGG	1 cut(s)	2315
AciI	CCGC	3 cut(s)	82, 856, 1204
AclWI	GGATC	4 cut(s)	693, 1038, 1514, 1527
AcoI	YGGCCR	3 cut(s)	37, 354, 385
AcsI	RAATTY	8 cut(s)	1129, 1184, 1335, 1355, 1742, 1780, 1828, 2217
AcuI	CTGAAG	1 cut(s)	1784
AcyI	GRCGYC	3 cut(s)	964, 1228, 1847
AfaI	GTAC	5 cut(s)	179, 401, 526, 1629, 1879
AfiI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 973, 1091, 1270, 1477, 2203, 2315
AflIII	ACRYGT	1 cut(s)	1691
AjiI	CACGTC	2 cut(s)	6, 346
AjnI	CCWGG	4 cut(s)	1194, 1522, 1930, 2365
AjuI	GAANNNNNNNTTGG	4 cut(s)	788, 820, 1252, 1284
Alw21I	GWGCWC	3 cut(s)	378, 1798, 2090
Alw26I	GTCTC	5 cut(s)	458, 461, 1694, 2250, 2400
AlwI	GGATC	4 cut(s)	693, 1038, 1514, 1527
AlwNI	CAGNNNCTG	2 cut(s)	622, 2372
AoxI	GGCC	5 cut(s)	28, 37, 100, 354, 385
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	8 cut(s)	277, 832, 859, 934, 1762, 2122, 2266, 2386
ApoI	RAATTY	8 cut(s)	1129, 1184, 1335, 1355, 1742, 1780, 1828, 2217
AseI	ATTAAT	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	277, 966, 1230
AspS9I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1422, 1468
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	5 cut(s)	1445, 1538, 1701, 1946, 2337
AvaII	GGWCC	3 cut(s)	1159, 1422, 1468
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	2 cut(s)	104, 1195
BalI	TGGCCA	3 cut(s)	39, 356, 387
BamHI	GGATCC	1 cut(s)	1519
BanI	GGYRCC	2 cut(s)	963, 1227
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	4 cut(s)	77, 298, 1212, 1983
Bbv12I	GWGCWC	3 cut(s)	378, 1798, 2090
BbvCI	CCTCAGC	2 cut(s)	1344, 2349
BbvI	GCAGC	8 cut(s)	264, 819, 846, 946, 1774, 2134, 2253, 2398
BccI	CCATC	8 cut(s)	20, 158, 256, 1293, 1610, 1628, 1669, 1955
BceAI	ACGGC	2 cut(s)	418, 977
BciT130I	CCWGG	4 cut(s)	1196, 1524, 1932, 2367
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	5 cut(s)	458, 461, 1694, 2250, 2400
BfaI	CTAG	3 cut(s)	62, 863, 1176
BfmI	CTRYAG	2 cut(s)	181, 2120
BfoI	RGCGCY	2 cut(s)	967, 1231
BfuAI	ACCTGC	3 cut(s)	1197, 1411, 2194
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	3 cut(s)	58, 1867, 2053
BisI	GCNGC	9 cut(s)	278, 833, 857, 860, 935, 1763, 2123, 2267, 2387
BlsI	GCNGC	9 cut(s)	279, 834, 858, 861, 936, 1764, 2124, 2268, 2388
BmcAI	AGTACT	1 cut(s)	1879
Bme1390I	CCNGG	5 cut(s)	968, 1196, 1524, 1932, 2367
Bme18I	GGWCC	3 cut(s)	1159, 1422, 1468
BmgBI	CACGTC	2 cut(s)	6, 346
BmgT120I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1422, 1468
BmiI	GGNNCC	5 cut(s)	102, 965, 1229, 1470, 1521
BmrFI	CCNGG	5 cut(s)	968, 1196, 1524, 1932, 2367
BmrI	ACTGGG	2 cut(s)	1516, 1707
BmsI	GCATC	8 cut(s)	322, 409, 477, 641, 934, 1824, 2291, 2334
BmuI	ACTGGG	2 cut(s)	1516, 1707
BpiI	GAAGAC	4 cut(s)	77, 298, 1212, 1983
BplI	GAGNNNNNCTC	4 cut(s)	1520, 1552, 1730, 1762
Bpu10I	CCTNAGC	3 cut(s)	1344, 1884, 2349
BpuEI	CTTGAG	2 cut(s)	302, 1848
BpuMI	CCSGG	1 cut(s)	968
Bsa29I	ATCGAT	2 cut(s)	24, 1491
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaHI	GRCGYC	3 cut(s)	964, 1228, 1847
BsaI	GGTCTC	1 cut(s)	1694
BsaJI	CCNNGG	1 cut(s)	1194
BsaWI	WCCGGW	1 cut(s)	2044
BsaXI	ACNNNNNCTCC	4 cut(s)	1296, 1326, 1650, 1680
Bsc4I	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 973, 1091, 1270, 1477, 2203, 2315
Bse1I	ACTGG	2 cut(s)	1511, 1713
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	2 cut(s)	230, 576
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	4 cut(s)	1196, 1524, 1932, 2367
BseCI	ATCGAT	2 cut(s)	24, 1491
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	3 cut(s)	481, 1586, 1680
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 973, 1091, 1270, 1477, 2203, 2315
BseMI	GCAATG	2 cut(s)	230, 576
BseMII	CTCAG	8 cut(s)	777, 1128, 1163, 1335, 1659, 1904, 2165, 2363
BseNI	ACTGG	2 cut(s)	1511, 1713
BseRI	GAGGAG	5 cut(s)	137, 755, 881, 1529, 1712
BseSI	GKGCMC	2 cut(s)	104, 1195
BseXI	GCAGC	8 cut(s)	264, 819, 846, 946, 1774, 2134, 2253, 2398
BseYI	CCCAGC	3 cut(s)	1055, 2134, 2261
BsgI	GTGCAG	2 cut(s)	729, 2029
Bsh1285I	CGRYCG	1 cut(s)	1448
BshFI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BshNI	GGYRCC	2 cut(s)	963, 1227
BshVI	ATCGAT	2 cut(s)	24, 1491
BsiEI	CGRYCG	1 cut(s)	1448
BsiHKAI	GWGCWC	3 cut(s)	378, 1798, 2090
BsiSI	CCGG	3 cut(s)	593, 967, 2045
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	9 cut(s)	81, 456, 504, 973, 1091, 1270, 1477, 2203, 2315
BsmAI	GTCTC	5 cut(s)	458, 461, 1694, 2250, 2400
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	30, 39, 102, 356, 387
Bso31I	GGTCTC	1 cut(s)	1694
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	5 cut(s)	104, 378, 1195, 1798, 2090
BspACI	CCGC	3 cut(s)	82, 856, 1204
BspANI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BspCNI	CTCAG	8 cut(s)	778, 1129, 1162, 1336, 1658, 1905, 2164, 2362
BspDI	ATCGAT	2 cut(s)	24, 1491
BspLI	GGNNCC	5 cut(s)	102, 965, 1229, 1470, 1521
BspMAI	CTGCAG	1 cut(s)	2124
BspMI	ACCTGC	3 cut(s)	1197, 1411, 2194
BspPI	GGATC	4 cut(s)	693, 1038, 1514, 1527
BspQI	GCTCTTC	2 cut(s)	822, 1803
BspT107I	GGYRCC	2 cut(s)	963, 1227
BspTNI	GGTCTC	1 cut(s)	1694
BsrDI	GCAATG	2 cut(s)	230, 576
BsrI	ACTGG	2 cut(s)	1511, 1713
BssECI	CCNNGG	1 cut(s)	1194
BssNI	GRCGYC	3 cut(s)	964, 1228, 1847
Bst2UI	CCWGG	4 cut(s)	1196, 1524, 1932, 2367
Bst4CI	ACNGT	4 cut(s)	361, 1099, 1449, 1957
Bst6I	CTCTTC	7 cut(s)	80, 261, 822, 1506, 1569, 1753, 1803
BstACI	GRCGYC	3 cut(s)	964, 1228, 1847
BstF5I	GGATG	3 cut(s)	481, 1586, 1680
BstH2I	RGCGCY	2 cut(s)	967, 1231
BstHHI	GCGC	3 cut(s)	277, 966, 1230
BstMAI	GTCTC	5 cut(s)	458, 461, 1694, 2250, 2400
BstMCI	CGRYCG	1 cut(s)	1448
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1762
BstNI	CCWGG	4 cut(s)	1196, 1524, 1932, 2367
BstNSI	RCATGY	4 cut(s)	1068, 1695, 1925, 1969
BstSCI	CCNGG	5 cut(s)	966, 1194, 1522, 1930, 2365
BstSFI	CTRYAG	2 cut(s)	181, 2120
BstSLI	GKGCMC	2 cut(s)	104, 1195
BstV1I	GCAGC	8 cut(s)	264, 819, 846, 946, 1774, 2134, 2253, 2398
BstV2I	GAAGAC	4 cut(s)	77, 298, 1212, 1983
BstX2I	RGATCY	4 cut(s)	58, 1519, 1867, 2053
BstYI	RGATCY	4 cut(s)	58, 1519, 1867, 2053
Bsu15I	ATCGAT	2 cut(s)	24, 1491
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuRI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BsuTUI	ATCGAT	2 cut(s)	24, 1491
BtrI	CACGTC	2 cut(s)	6, 346
BtsCI	GGATG	3 cut(s)	481, 1586, 1680
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	3 cut(s)	1197, 1411, 2194
CaiI	CAGNNNCTG	2 cut(s)	622, 2372
CfoI	GCGC	3 cut(s)	277, 966, 1230
Cfr13I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1422, 1468
ClaI	ATCGAT	2 cut(s)	24, 1491
CseI	GACGC	3 cut(s)	806, 878, 1836
Csp6I	GTAC	5 cut(s)	178, 400, 525, 1628, 1878
CviAII	CATG	8 cut(s)	1027, 1065, 1329, 1436, 1692, 1838, 1922, 1966
CviQI	GTAC	5 cut(s)	178, 400, 525, 1628, 1878
DinI	GGCGCC	2 cut(s)	965, 1229
DraI	TTTAAA	1 cut(s)	1998
EaeI	YGGCCR	3 cut(s)	37, 354, 385
Eam1104I	CTCTTC	7 cut(s)	80, 261, 822, 1506, 1569, 1753, 1803
EarI	CTCTTC	7 cut(s)	80, 261, 822, 1506, 1569, 1753, 1803
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	1694
Eco32I	GATATC	4 cut(s)	1201, 1489, 1687, 2178
Eco47I	GGWCC	3 cut(s)	1159, 1422, 1468
Eco57I	CTGAAG	1 cut(s)	1784
Eco81I	CCTNAGG	1 cut(s)	1290
EcoO109I	RGGNCCY	2 cut(s)	100, 1468
EcoRII	CCWGG	4 cut(s)	1194, 1522, 1930, 2365
EcoRV	GATATC	4 cut(s)	1201, 1489, 1687, 2178
EcoT22I	ATGCAT	2 cut(s)	1839, 1923
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	2 cut(s)	965, 1229
EheI	GGCGCC	2 cut(s)	965, 1229
FaeI	CATG	8 cut(s)	1030, 1068, 1332, 1439, 1695, 1841, 1925, 1969
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	8 cut(s)	1026, 1064, 1328, 1435, 1691, 1837, 1921, 1965
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	278, 833, 857, 860, 935, 1763, 2123, 2267, 2387
FokI	GGATG	3 cut(s)	488, 1593, 1687
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	9 cut(s)	278, 833, 857, 860, 935, 1763, 2123, 2267, 2387
FspBI	CTAG	3 cut(s)	62, 863, 1176
GlaI	GCGC	3 cut(s)	276, 965, 1229
GluI	GCNGC	9 cut(s)	278, 833, 857, 860, 935, 1763, 2123, 2267, 2387
GsaI	CCCAGC	3 cut(s)	1059, 2138, 2265
HaeII	RGCGCY	2 cut(s)	967, 1231
HaeIII	GGCC	5 cut(s)	30, 39, 102, 356, 387
HapII	CCGG	3 cut(s)	593, 967, 2045
HgaI	GACGC	3 cut(s)	806, 878, 1836
HhaI	GCGC	3 cut(s)	277, 966, 1230
Hin1I	GRCGYC	3 cut(s)	964, 1228, 1847
Hin1II	CATG	8 cut(s)	1030, 1068, 1332, 1439, 1695, 1841, 1925, 1969
Hin6I	GCGC	3 cut(s)	275, 964, 1228
HinP1I	GCGC	3 cut(s)	275, 964, 1228
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	3 cut(s)	290, 651, 1017
HinfI	GANTC	7 cut(s)	440, 446, 670, 869, 1727, 1937, 2149
HpaII	CCGG	3 cut(s)	593, 967, 2045
HphI	GGTGA	5 cut(s)	1445, 1538, 1701, 1946, 2337
Hpy166II	GTNNAC	2 cut(s)	298, 1669
Hpy8I	GTNNAC	2 cut(s)	298, 1669
Hpy99I	CGWCG	2 cut(s)	894, 1284
HpyAV	CCTTC	7 cut(s)	622, 838, 967, 1459, 1553, 1837, 2375
HpyCH4III	ACNGT	4 cut(s)	361, 1099, 1449, 1957
HpyCH4IV	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1792
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1762
HpySE526I	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1792
Hsp92I	GRCGYC	3 cut(s)	964, 1228, 1847
Hsp92II	CATG	8 cut(s)	1030, 1068, 1332, 1439, 1695, 1841, 1925, 1969
HspAI	GCGC	3 cut(s)	275, 964, 1228
KasI	GGCGCC	2 cut(s)	963, 1227
Ksp22I	TGATCA	1 cut(s)	601
LguI	GCTCTTC	2 cut(s)	822, 1803
LmnI	GCTCC	4 cut(s)	619, 766, 847, 2093
Lsp1109I	GCAGC	8 cut(s)	264, 819, 846, 946, 1774, 2134, 2253, 2398
LweI	GCATC	8 cut(s)	322, 409, 477, 641, 934, 1824, 2291, 2334
MaeI	CTAG	3 cut(s)	62, 863, 1176
MaeII	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1792
MaeIII	GTNAC	8 cut(s)	230, 346, 1144, 1178, 1377, 1451, 1934, 2109
MflI	RGATCY	4 cut(s)	58, 1519, 1867, 2053
MhlI	GDGCHC	5 cut(s)	104, 378, 1195, 1798, 2090
MlsI	TGGCCA	3 cut(s)	39, 356, 387
MluNI	TGGCCA	3 cut(s)	39, 356, 387
Mly113I	GGCGCC	2 cut(s)	964, 1228
MlyI	GAGTC	3 cut(s)	878, 1931, 2143
MmeI	TCCRAC	2 cut(s)	411, 1262
Mox20I	TGGCCA	3 cut(s)	39, 356, 387
Mph1103I	ATGCAT	2 cut(s)	1839, 1923
MscI	TGGCCA	3 cut(s)	39, 356, 387
MseI	TTAA	7 cut(s)	680, 1041, 1314, 1817, 1997, 2016, 2156
Msp20I	TGGCCA	3 cut(s)	39, 356, 387
MspA1I	CMGCKG	1 cut(s)	2138
MspI	CCGG	3 cut(s)	593, 967, 2045
MspR9I	CCNGG	5 cut(s)	968, 1196, 1524, 1932, 2367
MvaI	CCWGG	4 cut(s)	1196, 1524, 1932, 2367
MwoI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1762
NarI	GGCGCC	2 cut(s)	964, 1228
NciI	CCSGG	1 cut(s)	968
NlaIII	CATG	8 cut(s)	1030, 1068, 1332, 1439, 1695, 1841, 1925, 1969
NlaIV	GGNNCC	5 cut(s)	102, 965, 1229, 1470, 1521
NmuCI	GTSAC	4 cut(s)	346, 1178, 1451, 1934
NsiI	ATGCAT	2 cut(s)	1839, 1923
NspI	RCATGY	4 cut(s)	1068, 1695, 1925, 1969
PaeI	GCATGC	2 cut(s)	1068, 1969
PciI	ACATGT	1 cut(s)	1691
PciSI	GCTCTTC	2 cut(s)	822, 1803
PfeI	GAWTC	4 cut(s)	440, 446, 670, 1727
PflFI	GACNNNGTC	2 cut(s)	302, 1449
PflMI	CCANNNNNTGG	1 cut(s)	2315
PkrI	GCNGC	9 cut(s)	279, 834, 858, 861, 936, 1764, 2124, 2268, 2388
PleI	GAGTC	3 cut(s)	877, 1931, 2143
PluTI	GGCGCC	2 cut(s)	967, 1231
PpsI	GAGTC	3 cut(s)	877, 1931, 2143
PpuMI	RGGWCCY	1 cut(s)	1468
PscI	ACATGT	1 cut(s)	1691
PshBI	ATTAAT	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	1468
Psp6I	CCWGG	4 cut(s)	1194, 1522, 1930, 2365
PspFI	CCCAGC	3 cut(s)	1055, 2134, 2261
PspGI	CCWGG	4 cut(s)	1194, 1522, 1930, 2365
PspN4I	GGNNCC	5 cut(s)	102, 965, 1229, 1470, 1521
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	6 cut(s)	29, 100, 101, 1159, 1422, 1468
PspPPI	RGGWCCY	1 cut(s)	1468
PstI	CTGCAG	1 cut(s)	2124
PstNI	CAGNNNCTG	2 cut(s)	622, 2372
PsuI	RGATCY	4 cut(s)	58, 1519, 1867, 2053
PsyI	GACNNNGTC	2 cut(s)	302, 1449
PvuII	CAGCTG	1 cut(s)	2138
RsaI	GTAC	5 cut(s)	179, 401, 526, 1629, 1879
RsaNI	GTAC	5 cut(s)	178, 400, 525, 1628, 1878
SapI	GCTCTTC	2 cut(s)	822, 1803
SaqAI	TTAA	7 cut(s)	680, 1041, 1314, 1817, 1997, 2016, 2156
SatI	GCNGC	9 cut(s)	278, 833, 857, 860, 935, 1763, 2123, 2267, 2387
Sau96I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1422, 1468
ScaI	AGTACT	1 cut(s)	1879
SchI	GAGTC	3 cut(s)	878, 1931, 2143
ScrFI	CCNGG	5 cut(s)	968, 1196, 1524, 1932, 2367
SduI	GDGCHC	5 cut(s)	104, 378, 1195, 1798, 2090
SfaNI	GCATC	8 cut(s)	322, 409, 477, 641, 934, 1824, 2291, 2334
SfcI	CTRYAG	2 cut(s)	181, 2120
SfiI	GGCCNNNNNGGCC	1 cut(s)	36
SfoI	GGCGCC	2 cut(s)	965, 1229
SinI	GGWCC	3 cut(s)	1159, 1422, 1468
SmlI	CTYRAG	2 cut(s)	317, 1863
SmoI	CTYRAG	2 cut(s)	317, 1863
SphI	GCATGC	2 cut(s)	1068, 1969
SsiI	CCGC	3 cut(s)	82, 856, 1204
SspDI	GGCGCC	2 cut(s)	963, 1227
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	62, 863, 1176
StyD4I	CCNGG	5 cut(s)	966, 1194, 1522, 1930, 2365
TaaI	ACNGT	4 cut(s)	361, 1099, 1449, 1957
TaiI	ACGT	6 cut(s)	8, 348, 353, 814, 1282, 1795
TaqI	TCGA	4 cut(s)	24, 532, 1444, 1491
TaqII	GACCGA	1 cut(s)	235
TatI	WGTACW	1 cut(s)	1877
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	4 cut(s)	440, 446, 670, 1727
Tru1I	TTAA	7 cut(s)	680, 1041, 1314, 1817, 1997, 2016, 2156
Tru9I	TTAA	7 cut(s)	680, 1041, 1314, 1817, 1997, 2016, 2156
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	4 cut(s)	346, 1178, 1451, 1934
TseI	GCWGC	8 cut(s)	277, 832, 859, 934, 1762, 2122, 2266, 2386
Tsp45I	GTSAC	4 cut(s)	346, 1178, 1451, 1934
TspGWI	ACGGA	3 cut(s)	339, 487, 940
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	2 cut(s)	302, 1449
Van91I	CCANNNNNTGG	1 cut(s)	2315
VpaK11BI	GGWCC	3 cut(s)	1159, 1422, 1468
VspI	ATTAAT	1 cut(s)	680
XapI	RAATTY	8 cut(s)	1129, 1184, 1335, 1355, 1742, 1780, 1828, 2217
XceI	RCATGY	4 cut(s)	1068, 1695, 1925, 1969
XspI	CTAG	3 cut(s)	62, 863, 1176
ZrmI	AGTACT	1 cut(s)	1879
Zsp2I	ATGCAT	2 cut(s)	1839, 1923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.