Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006301

Physical Location & Seq

Genomic Coordinates Reverse (-)

150645 .. 158300

Gene Structure 7656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGACGTGCGAAGTGGTGGTAATCGATGGCCCAAGTGGCCAGAAAACAAAGGGTCAAGATCTAGTGAAGAAGACCAAGAAGCGGAAGAGGGGTGGCAAGGGCCCAGAAGATTTAGGGGTTGAGGAGAAAGAGGCTAAGATTGGGTTGCTTCGCAAAGAGCTTGATGGGTTGTTTGGGTACTACAGGGAAGTGATGAGTGAGAGAGGGTGCTTAGATTTGAAGCAATGTGGTAACGATTTGAAATCGGTCATTGGGGCTTTGATGGAAGAGAGTGCGCTGCCATTGTCAAAGCTTGTTGACGAGGTCTTCCAGAAGCTCAAGAACGGAAATGATGCTTTCGGGGACGTGACGTTGGCCACCGTGAAGAAGATTGTGCTCTTGGTTGGCCAGAGAGAAATGTACGGCGTGCCTAATGCCGATGCCGATGTGTTGGAGGACGAATCTGAATCCTGTCTCTGGTGTTGGGAGACAAGGGATGTAAAGTTGATGCCAGCTTCCGTGCGTGGGGTATTGAATATTAGGCGTACCTGTCGAAGAAAGATCAATGAAAGGATTACTGCTGTTTCTGCAATGATAATGGCATTACAAAAGCCGGAGAGTGATCAAAGCTACATTCAGGAGCTGATGAAGGCATCGGAAATGATTGATAAAGCTTCCTGTGAGGCAAAGATTCGCTCATTAATGGATCGCCTATCACTGAAAAATAGTGCAGATATGGTAAAAAAGCAAGCAAAAAGAGAGGAGAAACTGCAAATCAAACAAATGGAGCGAGATAAACGAGAGGCTGAGAAAGAGAAACAAAGATTGGAACGTGAGCGTCAAAAAGAAGAGCTGCAAAATGAGAAGGAGCAAAAGCGGCTGCTAGAGGAGTCAGAAAAAGTTGAAAAGCGTCGGGAAAAAGAAGAATATGAAATAAGGAAACTACGGAGGAAGCAGCAAGAAGATGCTGAAAAAGAACAACGGCGCCGGGAGAAGGAAGAAGCTAAACTGAAAGATCAACTTTCCATAAAAAAGCAAGCTTCAATCATGGATCGTTTTCTTAAAAGAACCAAACCCAGCCCTGCATGCCAGAATGACCAATTACCAACTAAAGGAACTGTGTCTATTTCATCAAGTAAGAACGATGAAAATTTGTCTGAGGCAGTTACTCAGTCAATGGACCACACCCTTTCATCTAGTGACAAATTTAGTGCCCAGGATATCCGCAGGTCGCACTTGTCTTCTTGGCGCCATTTAGGTCATTCTATTCGTTCAAACAGAAACCAAAGTTGGGGAATACGTCGGAAGCCTAAGGGTGAGCTATTTAAGGAACTCAAGCTGACAACCAGTAAAGAACTAGTTCACGGTGATGATAGCATGGAGAAACTTGTAGATAGATGGGGAGAACCTGTTAATGATGAGAGATCATGTCAAATTCTTGCTGAGGTCAAGAAATTCAAATCAAGAAAGCAGTTGTTACAATTTGATAAGAGCCATAGACCTGCATTTTATGGTATATGGTCCAAGAAAAGTCATGTTGTTCGACCGTGTCACCCTCTTAGGAAGGACCCAGACTTGGATTACGATATCGATAGTGATGAGGACTGGGAAGAGGAGGATCCTGGTGAGAGCCTCTCTGATTGCGATAAAGACGATGAAGGAGAAAGTTTAGAAGAGGGATGTTCAAAAGCTGATGATGAAGATGAAAGTGAAGATGGTTTTTTCGTACCAGATGGCTATCTCTCAGAAAATGAGGGAGTAGAAGTGGACAGGATGGAAACTGATATCACATGTGAGGAGACCAAATCACCCAGTTGTAAGCAAGATTCAGAGAGCGAGAAATTCTCTTCTTTGCTTCGGCAGCAAAAGTATTTAGGAAATTTGACAGAACGTGCTCTTCAGAAAAATCAACCTTTAATCATATCAAATTTGATGCATGAGAAGGCGTCTTTGCTAATGGCTCAAGATCTTAGCAGTACTCCTAAGCTGGAACAGATGTGCTTGCAAGCTCTGAGTATGCATGTGTTTCCTGGTGACTCATTGGTGGAGATAACAGTTGATGGCATGCAAGAAGAAGACCCAGAGGTTTGCCTTTTAAATGGCAAGTGCAGTATTAAATCAAGCTCTGCTGTCGCTGTTATACCGGAATTAGATCTGCCTGCAATAGTGAGTAGTGCATGCCATTCTACATTTGGACTCAGAAATCCTTCCAGAAGTTTTAGTGTATTAGATAAGTGGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAF1A

Protein Analysis

741

Amino Acids

84.67

Weight (kDa)

5.65

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1A_dimeriz	PF12253	484 - 549	5.9e-19	Chromatin assembly factor 1 subunit A dimerization domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65470 AT1G65470
fragaria_vesca	FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081 FvH4_6g00081
malus_domestica	MD00G1017400.v1.1 MD12G1261700.v1.1
prunus_persica	Prupe.6G365000_v2.0.a1 Prupe.6G365000_v2.0.a1
pyrus_communis	pycom04g21970 pycom12g24210
rosa_chinensis	RchiOBHm_Chr3g0447421
rosa_laevigata	RLG00000026000
rosa_multiflora	Rmu_ssc0000473.1_g000021
rosa_roxburghii	Rroxscaffold_6G00425620
rosa_rugosa	Rorug02G0601300 Rorug02G0601400 Rorug02G0601500 Rorug02G0601600
rosa_samantha	Rh3AG001500 Rh3BG001200 Rh3CG001200 Rh3DG001400
rosa_wichuraiana	Rw3G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1197, 1489
AccB1I	GGYRCC	2 cut(s)	963, 1227
AciI	CCGC	3 cut(s)	82, 856, 1204
AclWI	GGATC	4 cut(s)	693, 1038, 1592, 1605
AcoI	YGGCCR	3 cut(s)	37, 354, 385
AcsI	RAATTY	7 cut(s)	1129, 1184, 1413, 1433, 1820, 1858, 1906
AcuI	CTGAAG	1 cut(s)	1862
AcyI	GRCGYC	3 cut(s)	964, 1228, 1925
AfaI	GTAC	5 cut(s)	179, 401, 526, 1707, 1957
AfiI	CCNNNNNNNGG	7 cut(s)	81, 456, 504, 973, 1091, 1270, 1555
AflIII	ACRYGT	1 cut(s)	1769
AgsI	TTSAA	8 cut(s)	220, 241, 514, 884, 1023, 1254, 1438, 1665
AhlI	ACTAGT	1 cut(s)	1336
AjiI	CACGTC	2 cut(s)	6, 346
AjnI	CCWGG	3 cut(s)	1194, 1600, 2008
AjuI	GAANNNNNNNTTGG	4 cut(s)	788, 820, 1252, 1284
Alw21I	GWGCWC	2 cut(s)	378, 1876
Alw26I	GTCTC	3 cut(s)	458, 461, 1772
AlwI	GGATC	4 cut(s)	693, 1038, 1592, 1605
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	5 cut(s)	28, 37, 100, 354, 385
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	5 cut(s)	277, 832, 859, 934, 1840
ApoI	RAATTY	7 cut(s)	1129, 1184, 1413, 1433, 1820, 1858, 1906
AseI	ATTAAT	1 cut(s)	680
Asp700I	GAANNNNTTC	2 cut(s)	1338, 2185
AspLEI	GCGC	3 cut(s)	277, 966, 1230
AspS9I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1500, 1546
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	6 cut(s)	1307, 1358, 1523, 1616, 1779, 2024
AvaII	GGWCC	3 cut(s)	1159, 1500, 1546
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	2 cut(s)	104, 1195
BalI	TGGCCA	3 cut(s)	39, 356, 387
BamHI	GGATCC	1 cut(s)	1597
BanI	GGYRCC	2 cut(s)	963, 1227
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	4 cut(s)	77, 298, 1212, 2061
Bbv12I	GWGCWC	2 cut(s)	378, 1876
BbvCI	CCTCAGC	1 cut(s)	1422
BbvI	GCAGC	5 cut(s)	264, 819, 846, 946, 1852
BccI	CCATC	8 cut(s)	20, 158, 256, 1371, 1688, 1706, 1747, 2033
BceAI	ACGGC	2 cut(s)	418, 977
BciT130I	CCWGG	3 cut(s)	1196, 1602, 2010
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	3 cut(s)	458, 461, 1772
BcuI	ACTAGT	1 cut(s)	1336
BfaI	CTAG	4 cut(s)	62, 863, 1176, 1337
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	2 cut(s)	967, 1231
BfuAI	ACCTGC	2 cut(s)	1197, 1489
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	3 cut(s)	58, 1945, 2131
BisI	GCNGC	6 cut(s)	278, 833, 857, 860, 935, 1841
BlsI	GCNGC	6 cut(s)	279, 834, 858, 861, 936, 1842
BmcAI	AGTACT	1 cut(s)	1957
Bme1390I	CCNGG	4 cut(s)	968, 1196, 1602, 2010
Bme18I	GGWCC	3 cut(s)	1159, 1500, 1546
BmgBI	CACGTC	2 cut(s)	6, 346
BmgT120I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1500, 1546
BmiI	GGNNCC	5 cut(s)	102, 965, 1229, 1548, 1599
BmrFI	CCNGG	4 cut(s)	968, 1196, 1602, 2010
BmrI	ACTGGG	2 cut(s)	1594, 1785
BmsI	GCATC	6 cut(s)	322, 409, 477, 641, 934, 1902
BmuI	ACTGGG	2 cut(s)	1594, 1785
BpiI	GAAGAC	4 cut(s)	77, 298, 1212, 2061
BplI	GAGNNNNNCTC	4 cut(s)	1598, 1630, 1808, 1840
Bpu10I	CCTNAGC	2 cut(s)	1422, 1962
BpuEI	CTTGAG	3 cut(s)	302, 1298, 1926
BpuMI	CCSGG	1 cut(s)	968
Bsa29I	ATCGAT	2 cut(s)	24, 1569
BsaBI	GATNNNNATC	1 cut(s)	1716
BsaHI	GRCGYC	3 cut(s)	964, 1228, 1925
BsaI	GGTCTC	1 cut(s)	1772
BsaJI	CCNNGG	1 cut(s)	1194
BsaWI	WCCGGW	1 cut(s)	2122
BsaXI	ACNNNNNCTCC	4 cut(s)	1374, 1404, 1728, 1758
Bsc4I	CCNNNNNNNGG	7 cut(s)	81, 456, 504, 973, 1091, 1270, 1555
Bse1I	ACTGG	3 cut(s)	1326, 1589, 1791
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	2 cut(s)	230, 576
Bse8I	GATNNNNATC	1 cut(s)	1716
BseBI	CCWGG	3 cut(s)	1196, 1602, 2010
BseCI	ATCGAT	2 cut(s)	24, 1569
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	3 cut(s)	481, 1664, 1758
BseJI	GATNNNNATC	1 cut(s)	1716
BseLI	CCNNNNNNNGG	7 cut(s)	81, 456, 504, 973, 1091, 1270, 1555
BseMI	GCAATG	2 cut(s)	230, 576
BseMII	CTCAG	7 cut(s)	777, 1128, 1163, 1413, 1737, 1982, 2191
BseNI	ACTGG	3 cut(s)	1326, 1589, 1791
BseRI	GAGGAG	5 cut(s)	137, 755, 881, 1607, 1790
BseSI	GKGCMC	2 cut(s)	104, 1195
BseXI	GCAGC	5 cut(s)	264, 819, 846, 946, 1852
BseYI	CCCAGC	1 cut(s)	1055
BsgI	GTGCAG	2 cut(s)	729, 2107
Bsh1285I	CGRYCG	1 cut(s)	1526
BshFI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BshNI	GGYRCC	2 cut(s)	963, 1227
BshVI	ATCGAT	2 cut(s)	24, 1569
BsiEI	CGRYCG	1 cut(s)	1526
BsiHKAI	GWGCWC	2 cut(s)	378, 1876
BsiSI	CCGG	3 cut(s)	593, 967, 2123
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	7 cut(s)	81, 456, 504, 973, 1091, 1270, 1555
BsmAI	GTCTC	3 cut(s)	458, 461, 1772
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	30, 39, 102, 356, 387
Bso31I	GGTCTC	1 cut(s)	1772
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	4 cut(s)	104, 378, 1195, 1876
BspACI	CCGC	3 cut(s)	82, 856, 1204
BspANI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BspCNI	CTCAG	7 cut(s)	778, 1129, 1162, 1414, 1736, 1983, 2190
BspDI	ATCGAT	2 cut(s)	24, 1569
BspLI	GGNNCC	5 cut(s)	102, 965, 1229, 1548, 1599
BspMI	ACCTGC	2 cut(s)	1197, 1489
BspPI	GGATC	4 cut(s)	693, 1038, 1592, 1605
BspQI	GCTCTTC	2 cut(s)	822, 1881
BspT107I	GGYRCC	2 cut(s)	963, 1227
BspTNI	GGTCTC	1 cut(s)	1772
BsrDI	GCAATG	2 cut(s)	230, 576
BsrI	ACTGG	3 cut(s)	1326, 1589, 1791
BssECI	CCNNGG	1 cut(s)	1194
BssNI	GRCGYC	3 cut(s)	964, 1228, 1925
Bst2UI	CCWGG	3 cut(s)	1196, 1602, 2010
Bst4CI	ACNGT	5 cut(s)	361, 1099, 1346, 1527, 2035
Bst6I	CTCTTC	7 cut(s)	80, 261, 822, 1584, 1647, 1831, 1881
BstACI	GRCGYC	3 cut(s)	964, 1228, 1925
BstF5I	GGATG	3 cut(s)	481, 1664, 1758
BstH2I	RGCGCY	2 cut(s)	967, 1231
BstHHI	GCGC	3 cut(s)	277, 966, 1230
BstMAI	GTCTC	3 cut(s)	458, 461, 1772
BstMCI	CGRYCG	1 cut(s)	1526
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1840
BstNI	CCWGG	3 cut(s)	1196, 1602, 2010
BstNSI	RCATGY	5 cut(s)	1068, 1773, 2003, 2047, 2160
BstSCI	CCNGG	4 cut(s)	966, 1194, 1600, 2008
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	104, 1195
BstV1I	GCAGC	5 cut(s)	264, 819, 846, 946, 1852
BstV2I	GAAGAC	4 cut(s)	77, 298, 1212, 2061
BstX2I	RGATCY	4 cut(s)	58, 1597, 1945, 2131
BstYI	RGATCY	4 cut(s)	58, 1597, 1945, 2131
Bsu15I	ATCGAT	2 cut(s)	24, 1569
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuRI	GGCC	5 cut(s)	30, 39, 102, 356, 387
BsuTUI	ATCGAT	2 cut(s)	24, 1569
BtrI	CACGTC	2 cut(s)	6, 346
BtsCI	GGATG	3 cut(s)	481, 1664, 1758
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	2 cut(s)	1197, 1489
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	3 cut(s)	277, 966, 1230
Cfr13I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1500, 1546
ClaI	ATCGAT	2 cut(s)	24, 1569
CseI	GACGC	3 cut(s)	806, 878, 1914
Csp6I	GTAC	5 cut(s)	178, 400, 525, 1706, 1956
CviQI	GTAC	5 cut(s)	178, 400, 525, 1706, 1956
DinI	GGCGCC	2 cut(s)	965, 1229
DraI	TTTAAA	1 cut(s)	2076
EaeI	YGGCCR	3 cut(s)	37, 354, 385
Eam1104I	CTCTTC	7 cut(s)	80, 261, 822, 1584, 1647, 1831, 1881
EarI	CTCTTC	7 cut(s)	80, 261, 822, 1584, 1647, 1831, 1881
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	1772
Eco32I	GATATC	3 cut(s)	1201, 1567, 1765
Eco47I	GGWCC	3 cut(s)	1159, 1500, 1546
Eco57I	CTGAAG	1 cut(s)	1862
Eco81I	CCTNAGG	1 cut(s)	1290
EcoO109I	RGGNCCY	2 cut(s)	100, 1546
EcoRII	CCWGG	3 cut(s)	1194, 1600, 2008
EcoRV	GATATC	3 cut(s)	1201, 1567, 1765
EcoT22I	ATGCAT	2 cut(s)	1917, 2001
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	2 cut(s)	965, 1229
EheI	GGCGCC	2 cut(s)	965, 1229
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	6 cut(s)	278, 833, 857, 860, 935, 1841
FokI	GGATG	3 cut(s)	488, 1671, 1765
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	6 cut(s)	278, 833, 857, 860, 935, 1841
FspBI	CTAG	4 cut(s)	62, 863, 1176, 1337
GlaI	GCGC	3 cut(s)	276, 965, 1229
GluI	GCNGC	6 cut(s)	278, 833, 857, 860, 935, 1841
GsaI	CCCAGC	1 cut(s)	1059
HaeII	RGCGCY	2 cut(s)	967, 1231
HaeIII	GGCC	5 cut(s)	30, 39, 102, 356, 387
HapII	CCGG	3 cut(s)	593, 967, 2123
HgaI	GACGC	3 cut(s)	806, 878, 1914
HhaI	GCGC	3 cut(s)	277, 966, 1230
Hin1I	GRCGYC	3 cut(s)	964, 1228, 1925
Hin6I	GCGC	3 cut(s)	275, 964, 1228
HinP1I	GCGC	3 cut(s)	275, 964, 1228
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	3 cut(s)	290, 651, 1017
HinfI	GANTC	7 cut(s)	440, 446, 670, 869, 1805, 2015, 2175
HpaII	CCGG	3 cut(s)	593, 967, 2123
HphI	GGTGA	6 cut(s)	1307, 1358, 1523, 1616, 1779, 2024
Hpy166II	GTNNAC	3 cut(s)	298, 1342, 1747
Hpy188III	TCNNGA	9 cut(s)	56, 310, 319, 617, 893, 1429, 1443, 1943, 2190
Hpy8I	GTNNAC	3 cut(s)	298, 1342, 1747
Hpy99I	CGWCG	2 cut(s)	894, 1284
HpyAV	CCTTC	7 cut(s)	622, 838, 967, 1537, 1631, 1915, 2196
HpyCH4III	ACNGT	5 cut(s)	361, 1099, 1346, 1527, 2035
HpyCH4IV	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1870
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1840
HpySE526I	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1870
Hsp92I	GRCGYC	3 cut(s)	964, 1228, 1925
HspAI	GCGC	3 cut(s)	275, 964, 1228
KasI	GGCGCC	2 cut(s)	963, 1227
Ksp22I	TGATCA	1 cut(s)	601
LguI	GCTCTTC	2 cut(s)	822, 1881
LmnI	GCTCC	3 cut(s)	619, 766, 847
Lsp1109I	GCAGC	5 cut(s)	264, 819, 846, 946, 1852
LweI	GCATC	6 cut(s)	322, 409, 477, 641, 934, 1902
MaeI	CTAG	4 cut(s)	62, 863, 1176, 1337
MaeII	ACGT	6 cut(s)	5, 345, 350, 811, 1279, 1870
MaeIII	GTNAC	7 cut(s)	230, 346, 1144, 1178, 1455, 1529, 2012
MflI	RGATCY	4 cut(s)	58, 1597, 1945, 2131
MhlI	GDGCHC	4 cut(s)	104, 378, 1195, 1876
MlsI	TGGCCA	3 cut(s)	39, 356, 387
MluNI	TGGCCA	3 cut(s)	39, 356, 387
Mly113I	GGCGCC	2 cut(s)	964, 1228
MlyI	GAGTC	3 cut(s)	878, 2009, 2169
MmeI	TCCRAC	2 cut(s)	411, 1262
Mox20I	TGGCCA	3 cut(s)	39, 356, 387
Mph1103I	ATGCAT	2 cut(s)	1917, 2001
MroXI	GAANNNNTTC	2 cut(s)	1338, 2185
MscI	TGGCCA	3 cut(s)	39, 356, 387
MseI	TTAA	8 cut(s)	680, 1041, 1305, 1392, 1895, 2075, 2094, 2224
MslI	CAYNNNNRTG	1 cut(s)	1347
Msp20I	TGGCCA	3 cut(s)	39, 356, 387
MspI	CCGG	3 cut(s)	593, 967, 2123
MspR9I	CCNGG	4 cut(s)	968, 1196, 1602, 2010
MvaI	CCWGG	3 cut(s)	1196, 1602, 2010
MwoI	GCNNNNNNNGC	5 cut(s)	36, 566, 856, 1065, 1840
NarI	GGCGCC	2 cut(s)	964, 1228
NciI	CCSGG	1 cut(s)	968
NlaIV	GGNNCC	5 cut(s)	102, 965, 1229, 1548, 1599
NmuCI	GTSAC	4 cut(s)	346, 1178, 1529, 2012
NsiI	ATGCAT	2 cut(s)	1917, 2001
NspI	RCATGY	5 cut(s)	1068, 1773, 2003, 2047, 2160
PaeI	GCATGC	3 cut(s)	1068, 2047, 2160
PciI	ACATGT	1 cut(s)	1769
PciSI	GCTCTTC	2 cut(s)	822, 1881
PdmI	GAANNNNTTC	2 cut(s)	1338, 2185
PfeI	GAWTC	4 cut(s)	440, 446, 670, 1805
PflFI	GACNNNGTC	2 cut(s)	302, 1527
PkrI	GCNGC	6 cut(s)	279, 834, 858, 861, 936, 1842
PleI	GAGTC	3 cut(s)	877, 2009, 2169
PluTI	GGCGCC	2 cut(s)	967, 1231
PpsI	GAGTC	3 cut(s)	877, 2009, 2169
PpuMI	RGGWCCY	1 cut(s)	1546
PscI	ACATGT	1 cut(s)	1769
PshBI	ATTAAT	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	1546
Psp6I	CCWGG	3 cut(s)	1194, 1600, 2008
PspFI	CCCAGC	1 cut(s)	1055
PspGI	CCWGG	3 cut(s)	1194, 1600, 2008
PspN4I	GGNNCC	5 cut(s)	102, 965, 1229, 1548, 1599
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	6 cut(s)	29, 100, 101, 1159, 1500, 1546
PspPPI	RGGWCCY	1 cut(s)	1546
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	4 cut(s)	58, 1597, 1945, 2131
PsyI	GACNNNGTC	2 cut(s)	302, 1527
RsaI	GTAC	5 cut(s)	179, 401, 526, 1707, 1957
RsaNI	GTAC	5 cut(s)	178, 400, 525, 1706, 1956
RseI	CAYNNNNRTG	1 cut(s)	1347
SapI	GCTCTTC	2 cut(s)	822, 1881
SaqAI	TTAA	8 cut(s)	680, 1041, 1305, 1392, 1895, 2075, 2094, 2224
SatI	GCNGC	6 cut(s)	278, 833, 857, 860, 935, 1841
Sau96I	GGNCC	6 cut(s)	29, 100, 101, 1159, 1500, 1546
ScaI	AGTACT	1 cut(s)	1957
SchI	GAGTC	3 cut(s)	878, 2009, 2169
ScrFI	CCNGG	4 cut(s)	968, 1196, 1602, 2010
SduI	GDGCHC	4 cut(s)	104, 378, 1195, 1876
SfaNI	GCATC	6 cut(s)	322, 409, 477, 641, 934, 1902
SfcI	CTRYAG	1 cut(s)	181
SfiI	GGCCNNNNNGGCC	1 cut(s)	36
SfoI	GGCGCC	2 cut(s)	965, 1229
SinI	GGWCC	3 cut(s)	1159, 1500, 1546
SmiMI	CAYNNNNRTG	1 cut(s)	1347
SmlI	CTYRAG	3 cut(s)	317, 1313, 1941
SmoI	CTYRAG	3 cut(s)	317, 1313, 1941
SpeI	ACTAGT	1 cut(s)	1336
SphI	GCATGC	3 cut(s)	1068, 2047, 2160
SsiI	CCGC	3 cut(s)	82, 856, 1204
SspDI	GGCGCC	2 cut(s)	963, 1227
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	62, 863, 1176, 1337
StyD4I	CCNGG	4 cut(s)	966, 1194, 1600, 2008
TaaI	ACNGT	5 cut(s)	361, 1099, 1346, 1527, 2035
TaiI	ACGT	6 cut(s)	8, 348, 353, 814, 1282, 1873
TaqI	TCGA	4 cut(s)	24, 532, 1522, 1569
TaqII	GACCGA	1 cut(s)	235
TatI	WGTACW	1 cut(s)	1955
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	4 cut(s)	440, 446, 670, 1805
Tru1I	TTAA	8 cut(s)	680, 1041, 1305, 1392, 1895, 2075, 2094, 2224
Tru9I	TTAA	8 cut(s)	680, 1041, 1305, 1392, 1895, 2075, 2094, 2224
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	4 cut(s)	346, 1178, 1529, 2012
TseI	GCWGC	5 cut(s)	277, 832, 859, 934, 1840
Tsp45I	GTSAC	4 cut(s)	346, 1178, 1529, 2012
TspDTI	ATGAA	9 cut(s)	561, 641, 924, 1098, 1140, 1161, 1650, 1692, 1698
TspGWI	ACGGA	3 cut(s)	339, 487, 940
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	2 cut(s)	302, 1527
VpaK11BI	GGWCC	3 cut(s)	1159, 1500, 1546
VspI	ATTAAT	1 cut(s)	680
XapI	RAATTY	7 cut(s)	1129, 1184, 1413, 1433, 1820, 1858, 1906
XceI	RCATGY	5 cut(s)	1068, 1773, 2003, 2047, 2160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2168
XmnI	GAANNNNTTC	2 cut(s)	1338, 2185
XspI	CTAG	4 cut(s)	62, 863, 1176, 1337
ZrmI	AGTACT	1 cut(s)	1957
Zsp2I	ATGCAT	2 cut(s)	1917, 2001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.