Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013937

Physical Location & Seq

Genomic Coordinates Reverse (-)

2785807 .. 2789044

Gene Structure 3238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGAGCGCCCAATTGCGCCAAGACGACCAGCTCAGTCAACATGCCAAGGACGACAACGAAGAAGAAGCCAGCCGCTTATTGCGCTCGCAATCCTCGTCCTCCGACGTCGACGATGAGGTGGCTTACGAGTCGCGGGAGAAGATCCTGATCGTCGACGCCGACTCGGCCGCCGACGACGACGATTCGACTCAGGTCCCGCCCTTCTCCTGGAAGAAGCTCTGGCTGTTCACAGGCCCGGGGTTCCTGATGAGCATAGCGTTTTTGGATCCGGGGAATTTAGAAGGGGATCTCCAGGCGGGAGCGATCGCCGGCTACTCTTTGCTGTGGCTGTTAATGTGGGCCACCGCCATGGGCCTGCTGGTCCAGCTGCTCTCGGCCCGCCTCGGAGTCGCCACCGGCCGGCACCTGGCGGAGCTCTGCCGCGACGAGTATCCCAAGTGGGCCGGGCTGGTGCTCTGGTTCATGGCTGAGCTGGCGTTGATTGGGGCGGATATTCAGGAGGTCATTGGGAGTGCCATTGCTATTCAGATTCTCAGCAATGGCTTTTTGCCGCTCTGGGCCGGAGTGCTCATTACGGCGTCGGATTGTTTCCTTCTTTTAATTCTTGAGAACTATGGGGTGAGGAAGTTGGAAGGTGTTTTTGCGGTTCTCATTGCAACTATGGCTTTATCGTTTGCCTGGATGTTTGTTGACACAAAACCAAGTGGAAAAGAACTTTTAATCGGTATTCTGGTTCCAAGACTTAGCTCAAGAACAATTCGGCAGGCTGTGGGAGTTGTGGGTTGCGTCATTATGCCACACAATGTATTTTTGCACTCTGCTTTAGTCCAGTCAAGAAATATTGATCCTCACAAGAAAGGACGGGTTCAAGAGGCACTGAACTACTATTCAATTGAGTCATCAATTGCACTTTTTATCTCCTTCGTCATCAATTTGTTTGTGACCACTGTTTTCGCCAAGGGATTTTATGGTACTAAACAAGCTGATAGTATAGGACTAGTTAATGCAGGTCAGTTTCTTCAGGAGAAGTATGGAGGGGGGCTTTATCCAATTCTTTATATCTGGGGTGTTGGGTTATTGGCAGCTGGACAAAGTAGCACAATAACTGGGACATATGCTGGGCAGTTTATCATGGGAGGCTTCCTTAATCTTCGTTTGAAGAAGTGGCTGAGGGCATTGATCACAAGGAGTTTTGCTATTGTGCCAACTATAATTGTGGCAATTATCTTTAATACATCTGAGGGGTCGCTGGATGTTTTAAATGAGTGGCTTAATGTACTTCAGTCGGTTCAGATTCCTTTTGCTCTTATACCACTTCTCACTTTGGTGTCGAAGGAGCAGATCATGGGGGTCTTCAAGATTGGACCTCTACTCGAAAAAGTGGCATGGACGGTGGCTGTTTTGGTGATGGTAATCAATGGTTATCTATTGCTGGATTTCTTCATTGCTGAAGTTAATGGACTTCTGTTTGGTGTTGTGGTCTGTAGTGGTACAGCTGCATATGTAGCGTTTATTATATATCTGGTATTACGCAGCGGTGCCCTTCCTTCCACTTATTTCAATTCAGTGTACAAGAGATTTGCTGATACAGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0001558 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010042 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015318 GO:0016049 GO:0021700 GO:0022603 GO:0022604 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0046873 GO:0046915 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048638 GO:0048639 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051510 GO:0051512 GO:0051716 GO:0055085 GO:0060560 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071287 GO:0071421 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

532

Amino Acids

58.22

Weight (kDa)

5.14

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nramp	PF01566	94 - 455	3.6e-114	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47240 AT4G18790
fragaria_vesca	FvH4_2g33450 FvH4_2g33450
malus_domestica	MD08G1089600.v1.1 MD15G1074200.v1.1
prunus_persica	Prupe.1G427000_v2.0.a1 Prupe.1G427000_v2.0.a1
pyrus_communis	pycom08g07290 pycom15g06940
rosa_chinensis	RchiOBHm_Chr6g0309081
rosa_laevigata	RLG00000010591
rosa_roxburghii	Rroxscaffold_7G00159660
rosa_rugosa	Rorug06G0369600
rosa_samantha	Rh6AG482300 Rh6CG496100
rosa_wichuraiana	Rw6G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	998
AccB1I	GGYRCC	2 cut(s)	402, 1538
AccBSI	CCGCTC	1 cut(s)	553
AccI	GTMKAC	2 cut(s)	108, 153
AccII	CGCG	2 cut(s)	133, 423
AclWI	GGATC	5 cut(s)	136, 260, 273, 294, 839
AcoI	YGGCCR	2 cut(s)	165, 397
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	3 cut(s)	1004, 1265, 1470
AcyI	GRCGYC	3 cut(s)	105, 156, 578
AfaI	GTAC	4 cut(s)	973, 1278, 1492, 1571
AfiI	CCNNNNNNNGG	3 cut(s)	207, 399, 406
AgsI	TTSAA	5 cut(s)	869, 891, 1159, 1357, 1561
AhlI	ACTAGT	1 cut(s)	997
AjnI	CCWGG	4 cut(s)	206, 291, 405, 677
AleI	CACNNNNGTG	1 cut(s)	1325
AluBI	AGCT	9 cut(s)	31, 217, 367, 415, 472, 747, 983, 1085, 1496
AluI	AGCT	9 cut(s)	31, 217, 367, 415, 472, 747, 983, 1085, 1496
Alw21I	GWGCWC	3 cut(s)	417, 456, 570
AlwI	GGATC	5 cut(s)	136, 260, 273, 294, 839
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	8 cut(s)	165, 232, 339, 352, 375, 397, 441, 558
ApeKI	GCWGC	4 cut(s)	367, 1082, 1496, 1533
ApoI	RAATTY	1 cut(s)	274
AsiSI	GCGATCGC	1 cut(s)	306
AspLEI	GCGC	3 cut(s)	8, 18, 84
AspS9I	GGNCC	9 cut(s)	193, 233, 339, 352, 361, 376, 441, 558, 1364
AsuC2I	CCSGG	4 cut(s)	236, 237, 270, 445
AsuHPI	GGTGA	2 cut(s)	631, 1417
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	3 cut(s)	193, 361, 1364
BaeGI	GKGCMC	1 cut(s)	1543
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	402, 1538
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	1345
Bbv12I	GWGCWC	3 cut(s)	417, 456, 570
BbvCI	CCTCAGC	1 cut(s)	1169
BbvI	GCAGC	4 cut(s)	354, 1094, 1483, 1545
BccI	CCATC	1 cut(s)	1402
BceAI	ACGGC	1 cut(s)	591
BciT130I	CCWGG	4 cut(s)	208, 293, 407, 679
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	1179
BcnI	CCSGG	4 cut(s)	236, 237, 270, 445
BcuI	ACTAGT	1 cut(s)	997
BfaI	CTAG	1 cut(s)	998
BfmI	CTRYAG	1 cut(s)	1483
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	441
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	8 cut(s)	73, 168, 368, 421, 551, 1083, 1497, 1534
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	8 cut(s)	74, 169, 369, 422, 552, 1084, 1498, 1535
Bme1390I	CCNGG	8 cut(s)	208, 236, 237, 270, 293, 407, 445, 679
Bme18I	GGWCC	3 cut(s)	193, 361, 1364
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	9 cut(s)	193, 233, 339, 352, 361, 376, 441, 558, 1364
BmiI	GGNNCC	6 cut(s)	195, 242, 267, 404, 735, 1540
BmrFI	CCNGG	8 cut(s)	208, 236, 237, 270, 293, 407, 445, 679
BmrI	ACTGGG	1 cut(s)	1116
BmuI	ACTGGG	1 cut(s)	1116
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	1345
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	1169
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	626, 733
BpuMI	CCSGG	4 cut(s)	236, 237, 270, 445
BsaBI	GATNNNNATC	2 cut(s)	146, 1412
BsaHI	GRCGYC	3 cut(s)	105, 156, 578
BsaJI	CCNNGG	7 cut(s)	45, 235, 236, 269, 348, 382, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 399, 406
Bse118I	RCCGGY	3 cut(s)	308, 395, 399
Bse1I	ACTGG	2 cut(s)	829, 1111
Bse3DI	GCAATG	4 cut(s)	516, 544, 651, 1443
Bse8I	GATNNNNATC	2 cut(s)	146, 1412
BseBI	CCWGG	4 cut(s)	208, 293, 407, 679
BseDI	CCNNGG	7 cut(s)	45, 235, 236, 269, 348, 382, 957
BseGI	GGATG	2 cut(s)	687, 1258
BseJI	GATNNNNATC	2 cut(s)	146, 1412
BseLI	CCNNNNNNNGG	3 cut(s)	207, 399, 406
BseMI	GCAATG	4 cut(s)	516, 544, 651, 1443
BseMII	CTCAG	6 cut(s)	46, 203, 459, 547, 1160, 1230
BseNI	ACTGG	2 cut(s)	829, 1111
BseSI	GKGCMC	1 cut(s)	1543
BseX3I	CGGCCG	2 cut(s)	165, 397
BseXI	GCAGC	4 cut(s)	354, 1094, 1483, 1545
BseYI	CCCAGC	1 cut(s)	1118
Bsh1236I	CGCG	2 cut(s)	133, 423
Bsh1285I	CGRYCG	3 cut(s)	168, 306, 400
BshFI	GGCC	8 cut(s)	167, 234, 341, 354, 377, 399, 443, 560
BshNI	GGYRCC	2 cut(s)	402, 1538
BsiEI	CGRYCG	3 cut(s)	168, 306, 400
BsiHKAI	GWGCWC	3 cut(s)	417, 456, 570
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	7 cut(s)	236, 269, 309, 396, 400, 444, 561
BslFI	GGGAC	2 cut(s)	179, 1123
BslI	CCNNNNNNNGG	3 cut(s)	207, 399, 406
BsmFI	GGGAC	2 cut(s)	179, 1123
BsnI	GGCC	8 cut(s)	167, 234, 341, 354, 377, 399, 443, 560
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	4 cut(s)	417, 456, 570, 1543
Bsp1407I	TGTACA	1 cut(s)	1569
Bsp143I	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
Bsp1720I	GCTNAGC	1 cut(s)	468
Bsp19I	CCATGG	1 cut(s)	348
BspANI	GGCC	8 cut(s)	167, 234, 341, 354, 377, 399, 443, 560
BspCNI	CTCAG	6 cut(s)	45, 202, 460, 546, 1161, 1231
BspFNI	CGCG	2 cut(s)	133, 423
BspLI	GGNNCC	6 cut(s)	195, 242, 267, 404, 735, 1540
BspMI	ACCTGC	1 cut(s)	998
BspPI	GGATC	5 cut(s)	136, 260, 273, 294, 839
BspT107I	GGYRCC	2 cut(s)	402, 1538
BsrBI	CCGCTC	1 cut(s)	553
BsrDI	GCAATG	4 cut(s)	516, 544, 651, 1443
BsrFI	RCCGGY	3 cut(s)	308, 395, 399
BsrGI	TGTACA	1 cut(s)	1569
BsrI	ACTGG	2 cut(s)	829, 1111
BssAI	RCCGGY	3 cut(s)	308, 395, 399
BssECI	CCNNGG	7 cut(s)	45, 235, 236, 269, 348, 382, 957
BssMI	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
BssNI	GRCGYC	3 cut(s)	105, 156, 578
BssT1I	CCWWGG	3 cut(s)	45, 348, 957
Bst2UI	CCWGG	4 cut(s)	208, 293, 407, 679
Bst4CI	ACNGT	2 cut(s)	949, 1393
BstACI	GRCGYC	3 cut(s)	105, 156, 578
BstAUI	TGTACA	1 cut(s)	1569
BstC8I	GCNNGC	8 cut(s)	70, 86, 310, 356, 379, 401, 474, 765
BstDEI	CTNAG	7 cut(s)	32, 189, 468, 533, 743, 1169, 1239
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	687, 1258
BstFNI	CGCG	2 cut(s)	133, 423
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	3 cut(s)	8, 18, 84
BstKTI	GATC	8 cut(s)	144, 150, 268, 289, 306, 847, 1182, 1344
BstMBI	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
BstMCI	CGRYCG	3 cut(s)	168, 306, 400
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 164, 364, 473, 662, 1505
BstNI	CCWGG	4 cut(s)	208, 293, 407, 679
BstNSI	RCATGY	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	8 cut(s)	206, 234, 235, 268, 291, 405, 443, 677
BstSFI	CTRYAG	1 cut(s)	1483
BstSLI	GKGCMC	1 cut(s)	1543
BstUI	CGCG	2 cut(s)	133, 423
BstV1I	GCAGC	4 cut(s)	354, 1094, 1483, 1545
BstV2I	GAAGAC	1 cut(s)	1345
BstX2I	RGATCY	3 cut(s)	141, 265, 286
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	3 cut(s)	141, 265, 286
BstZI	CGGCCG	2 cut(s)	165, 397
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	8 cut(s)	167, 234, 341, 354, 377, 399, 443, 560
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	687, 1258
BtsIMutI	CAGTG	3 cut(s)	875, 945, 1572
BveI	ACCTGC	1 cut(s)	998
Cac8I	GCNNGC	8 cut(s)	70, 86, 310, 356, 379, 401, 474, 765
CfoI	GCGC	3 cut(s)	8, 18, 84
Cfr10I	RCCGGY	3 cut(s)	308, 395, 399
Cfr13I	GGNCC	9 cut(s)	193, 233, 339, 352, 361, 376, 441, 558, 1364
Cfr9I	CCCGGG	1 cut(s)	235
CseI	GACGC	3 cut(s)	164, 567, 775
Csp6I	GTAC	4 cut(s)	972, 1277, 1491, 1570
CviAII	CATG	6 cut(s)	41, 349, 463, 1132, 1345, 1386
CviQI	GTAC	4 cut(s)	972, 1277, 1491, 1570
DdeI	CTNAG	7 cut(s)	32, 189, 468, 533, 743, 1169, 1239
DpnI	GATC	8 cut(s)	143, 149, 267, 288, 305, 846, 1181, 1343
DpnII	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
DraI	TTTAAA	1 cut(s)	1260
EaeI	YGGCCR	2 cut(s)	165, 397
EagI	CGGCCG	2 cut(s)	165, 397
EciI	GGCGGA	2 cut(s)	425, 503
Ecl136II	GAGCTC	1 cut(s)	415
EclXI	CGGCCG	2 cut(s)	165, 397
Eco130I	CCWWGG	3 cut(s)	45, 348, 957
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	193, 361, 1364
Eco52I	CGGCCG	2 cut(s)	165, 397
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	3 cut(s)	1004, 1265, 1470
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	4 cut(s)	206, 291, 405, 677
EcoT14I	CCWWGG	3 cut(s)	45, 348, 957
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	3 cut(s)	45, 348, 957
FaeI	CATG	6 cut(s)	44, 352, 466, 1135, 1348, 1389
FaqI	GGGAC	2 cut(s)	179, 1123
FatI	CATG	6 cut(s)	40, 348, 462, 1131, 1344, 1385
FauI	CCCGC	4 cut(s)	126, 204, 289, 386
FauNDI	CATATG	2 cut(s)	1114, 1501
FbaI	TGATCA	1 cut(s)	1179
FblI	GTMKAC	2 cut(s)	108, 153
Fnu4HI	GCNGC	8 cut(s)	73, 168, 368, 421, 551, 1083, 1497, 1534
FokI	GGATG	2 cut(s)	694, 1265
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	8 cut(s)	73, 168, 368, 421, 551, 1083, 1497, 1534
FspBI	CTAG	1 cut(s)	998
GlaI	GCGC	3 cut(s)	7, 17, 83
GluI	GCNGC	8 cut(s)	73, 168, 368, 421, 551, 1083, 1497, 1534
GsaI	CCCAGC	1 cut(s)	1122
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	8 cut(s)	167, 234, 341, 354, 377, 399, 443, 560
HapII	CCGG	7 cut(s)	236, 269, 309, 396, 400, 444, 561
HgaI	GACGC	3 cut(s)	164, 567, 775
HhaI	GCGC	3 cut(s)	8, 18, 84
Hin1I	GRCGYC	3 cut(s)	105, 156, 578
Hin1II	CATG	6 cut(s)	44, 352, 466, 1135, 1348, 1389
Hin6I	GCGC	3 cut(s)	6, 16, 82
HinP1I	GCGC	3 cut(s)	6, 16, 82
HincII	GTYRAC	4 cut(s)	38, 109, 154, 691
HindII	GTYRAC	4 cut(s)	38, 109, 154, 691
HinfI	GANTC	8 cut(s)	128, 161, 182, 187, 387, 529, 896, 1294
HpaII	CCGG	7 cut(s)	236, 269, 309, 396, 400, 444, 561
HphI	GGTGA	2 cut(s)	631, 1417
Hpy166II	GTNNAC	6 cut(s)	38, 109, 154, 228, 691, 1570
Hpy188I	TCNGA	6 cut(s)	103, 386, 528, 583, 1240, 1293
Hpy188III	TCNNGA	9 cut(s)	145, 244, 497, 605, 750, 834, 869, 1022, 1357
Hpy8I	GTNNAC	6 cut(s)	38, 109, 154, 228, 691, 1570
HpyAV	CCTTC	8 cut(s)	211, 275, 602, 626, 931, 1327, 1553, 1557
HpyCH4III	ACNGT	2 cut(s)	949, 1393
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	656, 814, 908, 1007, 1499
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 164, 364, 473, 662, 1505
HpyF3I	CTNAG	7 cut(s)	32, 189, 468, 533, 743, 1169, 1239
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	3 cut(s)	105, 156, 578
Hsp92II	CATG	6 cut(s)	44, 352, 466, 1135, 1348, 1389
HspAI	GCGC	3 cut(s)	6, 16, 82
KroI	GCCGGC	2 cut(s)	308, 399
KroNI	GCCGGC	2 cut(s)	310, 401
Ksp22I	TGATCA	1 cut(s)	1179
Kzo9I	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
LmnI	GCTCC	3 cut(s)	299, 412, 1336
Lsp1109I	GCAGC	4 cut(s)	354, 1094, 1483, 1545
MaeI	CTAG	1 cut(s)	998
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	940
MalI	GATC	8 cut(s)	143, 149, 267, 288, 305, 846, 1181, 1343
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
MboII	GAAGA	9 cut(s)	71, 74, 151, 223, 1010, 1142, 1171, 1345, 1432
MfeI	CAATTG	3 cut(s)	11, 891, 903
MflI	RGATCY	3 cut(s)	141, 265, 286
MhlI	GDGCHC	4 cut(s)	417, 456, 570, 1543
MlyI	GAGTC	5 cut(s)	137, 155, 181, 396, 905
MmeI	TCCRAC	3 cut(s)	126, 561, 609
MroNI	GCCGGC	2 cut(s)	308, 399
MslI	CAYNNNNRTG	2 cut(s)	347, 1325
MspA1I	CMGCKG	4 cut(s)	367, 1085, 1496, 1536
MspI	CCGG	7 cut(s)	236, 269, 309, 396, 400, 444, 561
MspR9I	CCNGG	8 cut(s)	208, 236, 237, 270, 293, 407, 445, 679
MunI	CAATTG	3 cut(s)	11, 891, 903
MvaI	CCWGG	4 cut(s)	208, 293, 407, 679
MvnI	CGCG	2 cut(s)	133, 423
MwoI	GCNNNNNNNGC	6 cut(s)	81, 164, 364, 473, 662, 1505
NaeI	GCCGGC	2 cut(s)	310, 401
NciI	CCSGG	4 cut(s)	236, 237, 270, 445
NcoI	CCATGG	1 cut(s)	348
NdeI	CATATG	2 cut(s)	1114, 1501
NdeII	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
NgoMIV	GCCGGC	2 cut(s)	308, 399
NlaIII	CATG	6 cut(s)	44, 352, 466, 1135, 1348, 1389
NlaIV	GGNNCC	6 cut(s)	195, 242, 267, 404, 735, 1540
NmeAIII	GCCGAG	2 cut(s)	143, 353
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	1325
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 156
PdiI	GCCGGC	2 cut(s)	310, 401
PfeI	GAWTC	3 cut(s)	182, 529, 1294
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	8 cut(s)	74, 169, 369, 422, 552, 1084, 1498, 1535
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	5 cut(s)	136, 155, 181, 395, 904
PpsI	GAGTC	5 cut(s)	136, 155, 181, 395, 904
PpuMI	RGGWCCY	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	4 cut(s)	206, 291, 405, 677
PspFI	CCCAGC	1 cut(s)	1118
PspGI	CCWGG	4 cut(s)	206, 291, 405, 677
PspN4I	GGNNCC	6 cut(s)	195, 242, 267, 404, 735, 1540
PspPI	GGNCC	9 cut(s)	193, 233, 339, 352, 361, 376, 441, 558, 1364
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	3 cut(s)	141, 265, 286
PvuI	CGATCG	1 cut(s)	306
PvuII	CAGCTG	3 cut(s)	367, 1085, 1496
RgaI	GCGATCGC	1 cut(s)	306
RsaI	GTAC	4 cut(s)	973, 1278, 1492, 1571
RsaNI	GTAC	4 cut(s)	972, 1277, 1491, 1570
RseI	CAYNNNNRTG	2 cut(s)	347, 1325
SacI	GAGCTC	1 cut(s)	417
SalI	GTCGAC	2 cut(s)	107, 152
SatI	GCNGC	8 cut(s)	73, 168, 368, 421, 551, 1083, 1497, 1534
Sau3AI	GATC	8 cut(s)	141, 147, 265, 286, 303, 844, 1179, 1341
Sau96I	GGNCC	9 cut(s)	193, 233, 339, 352, 361, 376, 441, 558, 1364
SchI	GAGTC	5 cut(s)	137, 155, 181, 396, 905
ScrFI	CCNGG	8 cut(s)	208, 236, 237, 270, 293, 407, 445, 679
SduI	GDGCHC	4 cut(s)	417, 456, 570, 1543
SfaAI	GCGATCGC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	1483
SgfI	GCGATCGC	1 cut(s)	306
SgrDI	CGTCGACG	2 cut(s)	107, 152
SinI	GGWCC	3 cut(s)	193, 361, 1364
SmaI	CCCGGG	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	347, 1325
SmlI	CTYRAG	2 cut(s)	605, 748
SmoI	CTYRAG	2 cut(s)	605, 748
SpeI	ACTAGT	1 cut(s)	997
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	998
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	8 cut(s)	206, 234, 235, 268, 291, 405, 443, 677
StyI	CCWWGG	3 cut(s)	45, 348, 957
TaaI	ACNGT	2 cut(s)	949, 1393
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	5 cut(s)	108, 153, 185, 1331, 1374
TatI	WGTACW	2 cut(s)	1276, 1569
TauI	GCSGC	4 cut(s)	75, 170, 423, 553
TfiI	GAWTC	3 cut(s)	182, 529, 1294
TscAI	CASTG	3 cut(s)	882, 952, 1572
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	4 cut(s)	367, 1082, 1496, 1533
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	2 cut(s)	451, 1432
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	3 cut(s)	882, 952, 1572
VpaK11BI	GGWCC	3 cut(s)	193, 361, 1364
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmaI	CCCGGG	1 cut(s)	235
XmiI	GTMKAC	2 cut(s)	108, 153
XspI	CTAG	1 cut(s)	998
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.