Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013937

Physical Location & Seq

Genomic Coordinates Forward (+)

51638929 .. 51639664

Gene Structure 736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCATGCAAAGACTAGCAGAACTAGGGTTTGGCTTCGATCTTCGATCAACCCCAAATTTCTGAACAAAAGGGAAGACAAAACGATGCACTTACCGAGTGATCTTGCAGAAAAGATATTGTCACACTTGCCAATTGGGGATGCAGTGAGGACGAGTGTTTTGTCAAGTAAGTGGAGGTACAAATCAGCTATGCTACCACATTTGGTGTTTGATGATAAGTGTATCCCGACTGAGCACTATACATTTGTGAATATAGTTGATCATGTACTCTCAAGTCACATTGGCTCCATACACAAGTTCGAGCTTGCTCAAGAAAATTTATCGTTTAGAGATATTGATAGGTGGATACTTCATGTATCAAGAAACTCTGTTAAAGAGTTGATACTTGAAAAAGCTTGTGGAGACTACGAACTCTATTTGATGCCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0001558 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010042 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015318 GO:0016049 GO:0021700 GO:0022603 GO:0022604 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0046873 GO:0046915 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048638 GO:0048639 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051510 GO:0051512 GO:0051716 GO:0055085 GO:0060560 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071287 GO:0071421 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

143

Amino Acids

16.64

Weight (kDa)

8.91

Isoelectric Point (pI)

66.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	30 - 61	3.6e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47240 AT4G18790
fragaria_vesca	FvH4_2g33450 FvH4_2g33450
malus_domestica	MD08G1089600.v1.1 MD15G1074200.v1.1
prunus_persica	Prupe.1G427000_v2.0.a1 Prupe.1G427000_v2.0.a1
pyrus_communis	pycom08g07290 pycom15g06940
rosa_chinensis	RchiOBHm_Chr6g0309081
rosa_laevigata	RLG00000010591
rosa_roxburghii	Rroxscaffold_7G00159660
rosa_rugosa	Rorug06G0369600
rosa_samantha	Rh6AG482300 Rh6CG496100
rosa_wichuraiana	Rw6G041990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	56, 316
AfaI	GTAC	2 cut(s)	179, 267
AgsI	TTSAA	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	3 cut(s)	188, 304, 395
AluI	AGCT	3 cut(s)	188, 304, 395
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	396
ApoI	RAATTY	2 cut(s)	56, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	237
BciVI	GTATCC	2 cut(s)	233, 339
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	15, 24
BfuI	GTATCC	2 cut(s)	233, 339
BmiI	GGNNCC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	75, 130, 411
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	256, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	38, 45, 100, 259
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	286
BssMI	GATC	4 cut(s)	38, 45, 100, 259
BstC8I	GCNNGC	2 cut(s)	6, 306
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	41, 48, 103, 262
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	4 cut(s)	38, 45, 100, 259
BstNSI	RCATGY	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	81
BsuI	GTATCC	2 cut(s)	233, 339
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	6, 306
Csp6I	GTAC	2 cut(s)	178, 266
CviAII	CATG	3 cut(s)	5, 263, 353
CviJI	RGCY	5 cut(s)	34, 188, 285, 304, 395
CviKI_1	RGCY	5 cut(s)	34, 188, 285, 304, 395
CviQI	GTAC	2 cut(s)	178, 266
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	40, 47, 102, 261
DpnII	GATC	4 cut(s)	38, 45, 100, 259
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 266, 356
FaiI	YATR	8 cut(s)	6, 191, 240, 254, 264, 290, 354, 430
FatI	CATG	3 cut(s)	4, 262, 352
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	15, 24
Hin1II	CATG	3 cut(s)	8, 266, 356
HindIII	AAGCTT	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	3 cut(s)	226, 311, 360
HpyCH4V	TGCA	5 cut(s)	4, 8, 88, 107, 143
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	8, 266, 356
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	38, 45, 100, 259
LmnI	GCTCC	1 cut(s)	290
LweI	GCATC	3 cut(s)	75, 130, 411
MaeI	CTAG	2 cut(s)	15, 24
MaeIII	GTNAC	2 cut(s)	120, 275
MalI	GATC	4 cut(s)	40, 47, 102, 261
MboI	GATC	4 cut(s)	38, 45, 100, 259
MboII	GAAGA	2 cut(s)	33, 86
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	56, 132, 316
MnlI	CCTC	2 cut(s)	141, 168
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	372
MunI	CAATTG	1 cut(s)	132
NdeII	GATC	4 cut(s)	38, 45, 100, 259
NlaIII	CATG	3 cut(s)	8, 266, 356
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	120, 275
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	286
RsaI	GTAC	2 cut(s)	179, 267
RsaNI	GTAC	2 cut(s)	178, 266
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	38, 45, 100, 259
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	5 cut(s)	179, 190, 306, 344, 397
SfaNI	GCATC	3 cut(s)	75, 130, 411
SmlI	CTYRAG	2 cut(s)	271, 309
SmoI	CTYRAG	2 cut(s)	271, 309
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	3 cut(s)	56, 132, 316
SspMI	CTAG	2 cut(s)	15, 24
TaqI	TCGA	3 cut(s)	37, 44, 300
TasI	AATT	3 cut(s)	56, 132, 316
TatI	WGTACW	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	2 cut(s)	120, 275
Tsp45I	GTSAC	2 cut(s)	120, 275
TspDTI	ATGAA	2 cut(s)	341, 417
TspRI	CASTG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	56, 316
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	2 cut(s)	15, 24
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.