Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007235

Physical Location & Seq

Genomic Coordinates Forward (+)

13576253 .. 13581002

Gene Structure 4750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGCAGAGACCAAGCGAAAAACCAGAGACGACGGAAGTAGACAACGGAGCAGCAGCAGCAAGAAGCCGAAAACCAGCAAGAAAGGCAAGAGCGCCGATAAGGCAGAAAGAAAAGGCCCTCGCTTGCCCAACGCTCTGCGGAAGGAGCTCGACCGCATAAACCCTAGAACCGCCGACTCCGACGAAGAGATTGGCTCCGATGAAGAGGCTTTGGGCCAGGACCTGTATGAGTATGAAGAGGGACTGCCGGAGGAGGAGTCCAAGAAGAACCGCCGGTTCGACCCCGTCGATAACCTCGATTATGAGCTACCTGAGGACTTCGAGGATGAAAATGTGTCATCTGATGATGACAATGAGGCCAGGAACGGTGGAGCAGAGAGTGAGGCGGAGGACGAGGTTAGAGAGGAAAATGATGTAAGGAGAATCGGAGAAATGCCGACCCCGACTGTTGAAGGGAGGAGGAAGATGATAAACAATGTTGTGGTGTCGGAGGCATATCCCGAGTCCGAGTATAACCCTACTCGTGATATGTTGGAGGGTGAAGGAGCACTTAGCATTGGAGACCTTCTGGATCCTCTCCAAGGGAAACATGGTTATAGCAAACTTAAGAAGAGAGTACGTATTCTGGATAAGAAATCTACACCCATTCAAGCTCCACTTCCCAAGCCTGTGCAGCAGAGATTGGAGAGGAATGCAGCATATGACAAATCAAAGGAAGAGTTAAGAAAGTGGGAGCCAATCGTAAAGAGGAATAGGGAGGCGCCTACCATATACTTTGATGATGATAGGGATCTAGGGCCTTCATCCGTGGGAACAATAGCATCTGAATTTGAACCTCGAACTGAGTTTGAGAAGAAAATGGCTTCATTACTTTATGATGACGAGGTTATGGATGCTCACAGAAAAGATGGTTCAAGGCTCCTTGAATTAAATAAGGTATCTGCTGAAGATGAAAAGGATCGCCAGAATCGAATCGCCAAAATGCGCAGCCTTCTATTCCGGCATGAGTTGAAGTCAAAACACATAAAAAACATCAAATCCAAAACCTATCATCGTTTGTTGAAGAAAGACAAATTGAAGGCGAACTCTTTACAAAGTCAAATGGATCCAGAAGCTTCTAAAGAACTTGCAATGAAGCAAGAGTATGAACGAGCAAAGGAACGGATGACTCTGAGGCACAAAGGCAGCTCTAAGTGGGCAAAGCGCATAAAAGAGCGTGGTCTAGATGTCCAAGATGATGGTACTCGAGCTGCTATAGCCGAACAGCAGCACCTGCATGCTCAGCTGACAAGAAAAATGAATTCTATGAAAGATAGTGACACCAGCAGTAATGACACTAGTGATGATGATGATGATGATGATGATGATGTGGATGTTAACTCAGACGACGAGGGTAGGGCATCAAAGTTGTTAGAAAAAGCAAAGGAGAAGACACTTAAACTGTTAAATGAAGATAATGAAGTTCCAAACTCGGGGGTGCTTAGTTTACCTTTCATGGAACGTGCTTCTAAAAAAAAGAATGAGGCAGCTGCTGAAGAGGCTAAACTTGCTCTTCAAGAGTATGAATCATGGGCAAATCAATTGGGGGATTCAGGTGGGGGCAAAAATCTGAAAGTAGGCCGTCTGAGTGGGAGAATGGTCTTCAATGGAAAGGAGGCTCCAGAATCAAGTAAGAAGACTAAATCAGATAACAAGAATGGATCAGATAATTATTATGGTGATAGTGATAGTGATAGTGAAGACGACTTGGAACCCATCAGTATTTCCCCTGTTGGGAAATACAGAAGTAATGAATTAATGAAGGATGCCAACATTTCTCCTGTTTTACTTCATGAAGATTCTGAAAATCATAAGGATTCTTTTTCAAAGCAAAACACTGATGGTAGCGTGCAAGACCCAGGTCCCCAGGCAACACATGAAGTTTCTATTTTTGCTTCAGGCACATGGAGAAAGATGAAGAATGGAAATGACGCAAATGCCAATGCCAAGAAGTCTCCTGCACCCCTGCAATCAGTTGAGCTTGATCAGAATGTGCAAGAACCTGTAAAGGATTTGGATGAGGACAGTGATGCAGATAGTGAGGGACACATGGTAGATGGGGTTCTTTCGGCGGTACCAGAACCATCGTATGAACTTCCTTCCCAAGAAGAGCTAATTCGTCAAGCCTTTGCAGCAGATAATGTGGAGGATGAGTTCAAGAAAACAAAAGAGGATATTTTGAACGAGGAAAATCCCGAACCTGAAAAGCCTGTATTACTCCCTGGGTGGGGTCAGTGGACTAACGTACAGAAAAAGAAAGGAATACCTTCTTATATGCAGATAGAACATGATAGTGCCAAGAAGAAGAGGGAAGAAGCCCTTAAACAAAGAAAGGATGCAAATCTCAAACATGTTATTATCTCTGAGAAGCCGCCAAATAAAAAGTCTCAGAACCTTTTCACACAATCATTGCCCTACCCTTTCACGTCCAAAGAAGTTTTTGAACAGAGCATCCGCATGCCCCTTGGTCCTGAATTCAACCCTGCAAGTATGGTTGGAGCTCTTAATCGACCTGAAGTGGTAAAGAAATCTGGTGTAATTATAAAACCCATCGAGTTTGAGGAGGTGAATGCTTATGAAAAATTAGAGGGGCCCAAAAAGAGTGGACAGAAACACAAGAAGAACAGCAAGAGTAAAAGCAATAGCAATAGCAATAGCGGCAAAAATATGACAAAGATGAAGACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp14

Protein Analysis

909

Amino Acids

102.65

Weight (kDa)

5.54

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp14	PF04615	160 - 866	6.5e-171	Utp14 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02400 AT5G08600 AT5G08600 AT5G08600 AT5G36980
fragaria_vesca	FvH4_2g25830 FvH4_2g25830 FvH4_2g25830 FvH4_2g25830 FvH4_2g25830
malus_domestica	MD03G1289000.v1.1 MD11G1308900.v1.1
prunus_persica	Prupe.8G262300_v2.0.a1 Prupe.8G262300_v2.0.a1
pyrus_communis	pycom03g22910
rosa_chinensis	RchiOBHm_Chr6g0294141
rosa_laevigata	RLG00000011895
rosa_multiflora	Rmu_sc0005037.1_g000007
rosa_roxburghii	Rroxscaffold_7G00173610
rosa_rugosa	Rorug06G0241800
rosa_samantha	Rh6AG354200 Rh6BG361100 Rh6CG368400 Rh6DG355200
rosa_wichuraiana	Rw6G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2582
AarI	CACCTGC	1 cut(s)	1281
Acc16I	TGCGCA	1 cut(s)	986
Acc36I	ACCTGC	1 cut(s)	1281
Acc65I	GGTACC	1 cut(s)	2113
AccB1I	GGYRCC	2 cut(s)	760, 2113
AccI	GTMKAC	1 cut(s)	40
AciI	CCGC	9 cut(s)	139, 154, 171, 271, 386, 2111, 2411, 2494, 2697
AclWI	GGATC	7 cut(s)	566, 579, 798, 966, 1100, 1113, 1708
AcsI	RAATTY	3 cut(s)	827, 1300, 2513
AcuI	CTGAAG	4 cut(s)	966, 1554, 1920, 2574
AcyI	GRCGYC	1 cut(s)	761
AfaI	GTAC	4 cut(s)	618, 1243, 2115, 2286
AfiI	CCNNNNNNNGG	5 cut(s)	581, 1472, 1773, 2266, 2267
AflII	CTTAAG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	2389
AhlI	ACTAGT	1 cut(s)	1337
AjiI	CACGTC	1 cut(s)	2466
AjnI	CCWGG	5 cut(s)	216, 359, 1897, 1905, 2260
AloI	GAACNNNNNNTCC	4 cut(s)	2177, 2209, 2475, 2507
Alw21I	GWGCWC	3 cut(s)	150, 550, 2542
Alw26I	GTCTC	5 cut(s)	2, 21, 555, 1998, 2430
AlwI	GGATC	7 cut(s)	566, 579, 798, 966, 1100, 1113, 1708
AlwNI	CAGNNNCTG	3 cut(s)	223, 1273, 1532
Ama87I	CYCGRG	3 cut(s)	500, 1245, 1471
AoxI	GGCC	6 cut(s)	115, 214, 357, 797, 1618, 2630
ApaI	GGGCCC	1 cut(s)	2634
ApoI	RAATTY	3 cut(s)	827, 1300, 2513
ArsI	GACNNNNNNTTYG	2 cut(s)	2408, 2440
AseI	ATTAAT	1 cut(s)	1796
Asp700I	GAANNNNTTC	2 cut(s)	2305, 2435
Asp718I	GGTACC	1 cut(s)	2113
AspLEI	GCGC	4 cut(s)	95, 763, 987, 1206
AspS9I	GGNCC	8 cut(s)	116, 214, 220, 797, 1901, 2507, 2630, 2631
AsuHPI	GGTGA	3 cut(s)	551, 1730, 2617
AvaI	CYCGRG	3 cut(s)	500, 1245, 1471
AvaII	GGWCC	3 cut(s)	220, 1901, 2507
AxyI	CCTNAGG	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	2634
BamHI	GGATCC	2 cut(s)	571, 1105
BanI	GGYRCC	2 cut(s)	760, 2113
BanII	GRGCYC	3 cut(s)	150, 2542, 2634
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	5 cut(s)	1436, 1633, 1682, 1746, 2726
Bbv12I	GWGCWC	3 cut(s)	150, 550, 2542
BccI	CCATC	7 cut(s)	902, 1232, 1763, 1874, 2090, 2131, 2597
BceAI	ACGGC	1 cut(s)	1605
BciT130I	CCWGG	5 cut(s)	218, 361, 1899, 1907, 2262
BclI	TGATCA	1 cut(s)	2023
BcoDI	GTCTC	5 cut(s)	2, 21, 555, 1998, 2430
BcuI	ACTAGT	1 cut(s)	1337
BfaI	CTAG	4 cut(s)	165, 794, 1223, 1338
BfmI	CTRYAG	1 cut(s)	1254
BfoI	RGCGCY	2 cut(s)	96, 764
BfrI	CTTAAG	1 cut(s)	605
BfuAI	ACCTGC	1 cut(s)	1281
BglI	GCCNNNNNGGC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	1281
Bme1390I	CCNGG	5 cut(s)	218, 361, 1899, 1907, 2262
Bme18I	GGWCC	3 cut(s)	220, 1901, 2507
BmeT110I	CYCGRG	3 cut(s)	500, 1245, 1471
BmgBI	CACGTC	1 cut(s)	2466
BmgT120I	GGNCC	8 cut(s)	116, 214, 220, 797, 1901, 2507, 2630, 2631
BmrFI	CCNGG	5 cut(s)	218, 361, 1899, 1907, 2262
BmsI	GCATC	7 cut(s)	830, 883, 1409, 1795, 2059, 2365, 2499
BoxI	GACNNNNGTC	1 cut(s)	1899
BpiI	GAAGAC	5 cut(s)	1436, 1633, 1682, 1746, 2726
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	1644
Bpu1102I	GCTNAGC	1 cut(s)	1281
BsaAI	YACGTR	1 cut(s)	620
BsaBI	GATNNNNATC	2 cut(s)	789, 2379
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	2 cut(s)	2, 555
BsaJI	CCNNGG	7 cut(s)	580, 807, 1897, 1905, 2260, 2261, 2503
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 2177, 2207
Bsc4I	CCNNNNNNNGG	5 cut(s)	581, 1472, 1773, 2266, 2267
Bse118I	RCCGGY	1 cut(s)	273
Bse21I	CCTNAGG	1 cut(s)	312
Bse3DI	GCAATG	2 cut(s)	1137, 2447
Bse8I	GATNNNNATC	2 cut(s)	789, 2379
BseBI	CCWGG	5 cut(s)	218, 361, 1899, 1907, 2262
BseDI	CCNNGG	7 cut(s)	580, 807, 1897, 1905, 2260, 2261, 2503
BseJI	GATNNNNATC	2 cut(s)	789, 2379
BseLI	CCNNNNNNNGG	5 cut(s)	581, 1472, 1773, 2266, 2267
BseMI	GCAATG	2 cut(s)	1137, 2447
BseMII	CTCAG	8 cut(s)	303, 834, 1163, 1295, 1395, 1616, 2394, 2441
BseRI	GAGGAG	4 cut(s)	266, 269, 472, 2615
BseSI	GKGCMC	1 cut(s)	2634
BsgI	GTGCAG	2 cut(s)	692, 1983
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	6 cut(s)	117, 216, 359, 799, 1620, 2632
BshNI	GGYRCC	2 cut(s)	760, 2113
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	3 cut(s)	150, 550, 2542
BsiHKCI	CYCGRG	3 cut(s)	500, 1245, 1471
BsiSI	CCGG	3 cut(s)	248, 274, 1000
BslFI	GGGAC	3 cut(s)	255, 1887, 2097
BslI	CCNNNNNNNGG	5 cut(s)	581, 1472, 1773, 2266, 2267
BsmAI	GTCTC	5 cut(s)	2, 21, 555, 1998, 2430
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	3 cut(s)	255, 1887, 2097
BsmI	GAATGC	2 cut(s)	697, 2614
BsnI	GGCC	6 cut(s)	117, 216, 359, 799, 1620, 2632
Bso31I	GGTCTC	2 cut(s)	2, 555
BsoBI	CYCGRG	3 cut(s)	500, 1245, 1471
Bsp120I	GGGCCC	1 cut(s)	2630
Bsp1286I	GDGCHC	4 cut(s)	150, 550, 2542, 2634
Bsp143I	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
Bsp1720I	GCTNAGC	1 cut(s)	1281
BspACI	CCGC	9 cut(s)	139, 154, 171, 271, 386, 2111, 2411, 2494, 2697
BspANI	GGCC	6 cut(s)	117, 216, 359, 799, 1620, 2632
BspCNI	CTCAG	8 cut(s)	304, 835, 1164, 1294, 1394, 1617, 2395, 2440
BspHI	TCATGA	1 cut(s)	1831
BspMI	ACCTGC	1 cut(s)	1281
BspPI	GGATC	7 cut(s)	566, 579, 798, 966, 1100, 1113, 1708
BspQI	GCTCTTC	2 cut(s)	1557, 2142
BspT107I	GGYRCC	2 cut(s)	760, 2113
BspTI	CTTAAG	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	2, 555
BsrDI	GCAATG	2 cut(s)	1137, 2447
BsrFI	RCCGGY	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	7 cut(s)	580, 807, 1897, 1905, 2260, 2261, 2503
BssMI	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	2 cut(s)	580, 2503
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	5 cut(s)	218, 361, 1899, 1907, 2262
Bst4CI	ACNGT	4 cut(s)	368, 448, 1443, 2066
Bst6I	CTCTTC	9 cut(s)	180, 198, 231, 605, 711, 1530, 1557, 2142, 2339
BstACI	GRCGYC	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	125, 1278, 1889, 2498
BstDSI	CCRYGG	1 cut(s)	807
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstH2I	RGCGCY	2 cut(s)	96, 764
BstHHI	GCGC	4 cut(s)	95, 763, 987, 1206
BstKTI	GATC	6 cut(s)	574, 793, 961, 1108, 1703, 2026
BstMAI	GTCTC	5 cut(s)	2, 21, 555, 1998, 2430
BstMBI	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
BstMCI	CGRYCG	1 cut(s)	154
BstNI	CCWGG	5 cut(s)	218, 361, 1899, 1907, 2262
BstNSI	RCATGY	3 cut(s)	1280, 2393, 2500
BstPAI	GACNNNNGTC	1 cut(s)	1899
BstSCI	CCNGG	5 cut(s)	216, 359, 1897, 1905, 2260
BstSFI	CTRYAG	1 cut(s)	1254
BstSLI	GKGCMC	1 cut(s)	2634
BstSNI	TACGTA	1 cut(s)	620
BstV2I	GAAGAC	5 cut(s)	1436, 1633, 1682, 1746, 2726
BstX2I	RGATCY	3 cut(s)	571, 790, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	1238
BstYI	RGATCY	3 cut(s)	571, 790, 1105
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	6 cut(s)	117, 216, 359, 799, 1620, 2632
BtgI	CCRYGG	1 cut(s)	807
BtrI	CACGTC	1 cut(s)	2466
BtsIMutI	CAGTG	3 cut(s)	1875, 2071, 2279
BveI	ACCTGC	1 cut(s)	1281
Cac8I	GCNNGC	4 cut(s)	125, 1278, 1889, 2498
CaiI	CAGNNNCTG	3 cut(s)	223, 1273, 1532
CciI	TCATGA	1 cut(s)	1831
CfoI	GCGC	4 cut(s)	95, 763, 987, 1206
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	8 cut(s)	116, 214, 220, 797, 1901, 2507, 2630, 2631
CseI	GACGC	1 cut(s)	1979
Csp6I	GTAC	4 cut(s)	617, 1242, 2114, 2285
CspCI	CAANNNNNGTGG	2 cut(s)	2623, 2658
CviQI	GTAC	4 cut(s)	617, 1242, 2114, 2285
DinI	GGCGCC	1 cut(s)	762
DpnI	GATC	6 cut(s)	573, 792, 960, 1107, 1702, 2025
DpnII	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
Eam1104I	CTCTTC	9 cut(s)	180, 198, 231, 605, 711, 1530, 1557, 2142, 2339
EarI	CTCTTC	9 cut(s)	180, 198, 231, 605, 711, 1530, 1557, 2142, 2339
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	2 cut(s)	148, 2540
Eco105I	TACGTA	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	580, 2503
Eco24I	GRGCYC	3 cut(s)	150, 2542, 2634
Eco31I	GGTCTC	2 cut(s)	2, 555
Eco47I	GGWCC	3 cut(s)	220, 1901, 2507
Eco53kI	GAGCTC	2 cut(s)	148, 2540
Eco57I	CTGAAG	4 cut(s)	966, 1554, 1920, 2574
Eco81I	CCTNAGG	1 cut(s)	312
Eco88I	CYCGRG	3 cut(s)	500, 1245, 1471
EcoICRI	GAGCTC	2 cut(s)	148, 2540
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	5 cut(s)	116, 220, 797, 1901, 2630
EcoRI	GAATTC	2 cut(s)	1300, 2513
EcoRII	CCWGG	5 cut(s)	216, 359, 1897, 1905, 2260
EcoT14I	CCWWGG	2 cut(s)	580, 2503
EcoT38I	GRGCYC	3 cut(s)	150, 2542, 2634
EgeI	GGCGCC	1 cut(s)	762
EheI	GGCGCC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	580, 2503
Esp3I	CGTCTC	1 cut(s)	21
FalI	AAGNNNNNCTT	6 cut(s)	534, 566, 642, 674, 2343, 2375
FaqI	GGGAC	3 cut(s)	255, 1887, 2097
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	2023
FblI	GTMKAC	1 cut(s)	40
FriOI	GRGCYC	3 cut(s)	150, 2542, 2634
FspBI	CTAG	4 cut(s)	165, 794, 1223, 1338
FspI	TGCGCA	1 cut(s)	986
GlaI	GCGC	4 cut(s)	94, 762, 986, 1205
GsuI	CTGGAG	1 cut(s)	1644
HaeII	RGCGCY	2 cut(s)	96, 764
HaeIII	GGCC	6 cut(s)	117, 216, 359, 799, 1620, 2632
HapII	CCGG	3 cut(s)	248, 274, 1000
HgaI	GACGC	1 cut(s)	1979
HhaI	GCGC	4 cut(s)	95, 763, 987, 1206
Hin1I	GRCGYC	1 cut(s)	761
Hin6I	GCGC	4 cut(s)	93, 761, 985, 1204
HinP1I	GCGC	4 cut(s)	93, 761, 985, 1204
HincII	GTYRAC	1 cut(s)	1378
HindII	GTYRAC	1 cut(s)	1378
HindIII	AAGCTT	1 cut(s)	1113
HpaI	GTTAAC	1 cut(s)	1378
HpaII	CCGG	3 cut(s)	248, 274, 1000
HphI	GGTGA	3 cut(s)	551, 1730, 2617
Hpy166II	GTNNAC	5 cut(s)	41, 1378, 1487, 2277, 2645
Hpy8I	GTNNAC	5 cut(s)	41, 1378, 1487, 2277, 2645
Hpy99I	CGWCG	4 cut(s)	35, 185, 290, 1391
HpyCH4III	ACNGT	4 cut(s)	368, 448, 1443, 2066
HpyCH4IV	ACGT	4 cut(s)	619, 1501, 2283, 2465
HpySE526I	ACGT	4 cut(s)	619, 1501, 2283, 2465
Hsp92I	GRCGYC	1 cut(s)	761
HspAI	GCGC	4 cut(s)	93, 761, 985, 1204
KasI	GGCGCC	1 cut(s)	760
KpnI	GGTACC	1 cut(s)	2117
Ksp22I	TGATCA	1 cut(s)	2023
KspAI	GTTAAC	1 cut(s)	1378
Kzo9I	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
LguI	GCTCTTC	2 cut(s)	1557, 2142
LweI	GCATC	7 cut(s)	830, 883, 1409, 1795, 2059, 2365, 2499
MaeI	CTAG	4 cut(s)	165, 794, 1223, 1338
MaeII	ACGT	4 cut(s)	619, 1501, 2283, 2465
MaeIII	GTNAC	1 cut(s)	1316
MalI	GATC	6 cut(s)	573, 792, 960, 1107, 1702, 2025
MboI	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
MfeI	CAATTG	1 cut(s)	1580
MflI	RGATCY	3 cut(s)	571, 790, 1105
MhlI	GDGCHC	4 cut(s)	150, 550, 2542, 2634
Mly113I	GGCGCC	1 cut(s)	761
MlyI	GAGTC	4 cut(s)	170, 266, 512, 1162
MmeI	TCCRAC	4 cut(s)	204, 468, 513, 2515
MroXI	GAANNNNTTC	2 cut(s)	2305, 2435
MseI	TTAA	9 cut(s)	606, 722, 929, 1377, 1437, 1445, 1796, 2361, 2544
MslI	CAYNNNNRTG	3 cut(s)	1275, 2331, 2495
MspA1I	CMGCKG	2 cut(s)	1285, 1529
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	3 cut(s)	248, 274, 1000
MspR9I	CCNGG	5 cut(s)	218, 361, 1899, 1907, 2262
MunI	CAATTG	1 cut(s)	1580
Mva1269I	GAATGC	2 cut(s)	697, 2614
MvaI	CCWGG	5 cut(s)	218, 361, 1899, 1907, 2262
NarI	GGCGCC	1 cut(s)	761
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
NmuCI	GTSAC	1 cut(s)	1316
NsbI	TGCGCA	1 cut(s)	986
NspI	RCATGY	3 cut(s)	1280, 2393, 2500
PaeI	GCATGC	2 cut(s)	1280, 2500
PaeR7I	CTCGAG	1 cut(s)	1245
PagI	TCATGA	1 cut(s)	1831
PaqCI	CACCTGC	1 cut(s)	1281
PasI	CCCWGGG	1 cut(s)	2261
PciI	ACATGT	1 cut(s)	2389
PciSI	GCTCTTC	2 cut(s)	1557, 2142
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 294, 967
PctI	GAATGC	2 cut(s)	697, 2614
PdmI	GAANNNNTTC	2 cut(s)	2305, 2435
PfeI	GAWTC	8 cut(s)	423, 967, 972, 1565, 1589, 1664, 1838, 1856
PflFI	GACNNNGTC	1 cut(s)	284
PleI	GAGTC	4 cut(s)	170, 265, 511, 1162
PluTI	GGCGCC	1 cut(s)	764
PpsI	GAGTC	4 cut(s)	170, 265, 511, 1162
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	2 cut(s)	220, 1901
PscI	ACATGT	1 cut(s)	2389
PshAI	GACNNNNGTC	1 cut(s)	1899
PshBI	ATTAAT	1 cut(s)	1796
PsiI	TTATAA	1 cut(s)	2582
Psp124BI	GAGCTC	2 cut(s)	150, 2542
Psp5II	RGGWCCY	2 cut(s)	220, 1901
Psp6I	CCWGG	5 cut(s)	216, 359, 1897, 1905, 2260
PspGI	CCWGG	5 cut(s)	216, 359, 1897, 1905, 2260
PspOMI	GGGCCC	1 cut(s)	2630
PspPI	GGNCC	8 cut(s)	116, 214, 220, 797, 1901, 2507, 2630, 2631
PspPPI	RGGWCCY	2 cut(s)	220, 1901
PspXI	VCTCGAGB	1 cut(s)	1245
PsrI	GAACNNNNNNTAC	2 cut(s)	2085, 2117
PstNI	CAGNNNCTG	3 cut(s)	223, 1273, 1532
PsuI	RGATCY	3 cut(s)	571, 790, 1105
PsyI	GACNNNGTC	1 cut(s)	284
PvuII	CAGCTG	2 cut(s)	1285, 1529
RsaI	GTAC	4 cut(s)	618, 1243, 2115, 2286
RsaNI	GTAC	4 cut(s)	617, 1242, 2114, 2285
RseI	CAYNNNNRTG	3 cut(s)	1275, 2331, 2495
SacI	GAGCTC	2 cut(s)	150, 2542
SapI	GCTCTTC	2 cut(s)	1557, 2142
SaqAI	TTAA	9 cut(s)	606, 722, 929, 1377, 1437, 1445, 1796, 2361, 2544
Sau3AI	GATC	6 cut(s)	571, 790, 958, 1105, 1700, 2023
Sau96I	GGNCC	8 cut(s)	116, 214, 220, 797, 1901, 2507, 2630, 2631
SchI	GAGTC	4 cut(s)	170, 266, 512, 1162
ScrFI	CCNGG	5 cut(s)	218, 361, 1899, 1907, 2262
SduI	GDGCHC	4 cut(s)	150, 550, 2542, 2634
SfaNI	GCATC	7 cut(s)	830, 883, 1409, 1795, 2059, 2365, 2499
SfcI	CTRYAG	1 cut(s)	1254
SfoI	GGCGCC	1 cut(s)	762
Sfr274I	CTCGAG	1 cut(s)	1245
SinI	GGWCC	3 cut(s)	220, 1901, 2507
SlaI	CTCGAG	1 cut(s)	1245
SmiMI	CAYNNNNRTG	3 cut(s)	1275, 2331, 2495
SmlI	CTYRAG	2 cut(s)	605, 1245
SmoI	CTYRAG	2 cut(s)	605, 1245
SnaBI	TACGTA	1 cut(s)	620
SpeI	ACTAGT	1 cut(s)	1337
SphI	GCATGC	2 cut(s)	1280, 2500
SsiI	CCGC	9 cut(s)	139, 154, 171, 271, 386, 2111, 2411, 2494, 2697
SspDI	GGCGCC	1 cut(s)	760
SspMI	CTAG	4 cut(s)	165, 794, 1223, 1338
SstI	GAGCTC	2 cut(s)	150, 2542
StyD4I	CCNGG	5 cut(s)	216, 359, 1897, 1905, 2260
StyI	CCWWGG	2 cut(s)	580, 2503
TaaI	ACNGT	4 cut(s)	368, 448, 1443, 2066
TaiI	ACGT	4 cut(s)	622, 1504, 2286, 2468
TauI	GCSGC	2 cut(s)	2413, 2700
TfiI	GAWTC	8 cut(s)	423, 967, 972, 1565, 1589, 1664, 1838, 1856
Tru1I	TTAA	9 cut(s)	606, 722, 929, 1377, 1437, 1445, 1796, 2361, 2544
Tru9I	TTAA	9 cut(s)	606, 722, 929, 1377, 1437, 1445, 1796, 2361, 2544
TscAI	CASTG	3 cut(s)	1882, 2071, 2279
TseFI	GTSAC	1 cut(s)	1316
Tsp45I	GTSAC	1 cut(s)	1316
TspGWI	ACGGA	4 cut(s)	48, 61, 796, 1177
TspRI	CASTG	3 cut(s)	1882, 2071, 2279
Tth111I	GACNNNGTC	1 cut(s)	284
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	220, 1901, 2507
VspI	ATTAAT	1 cut(s)	1796
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	3 cut(s)	827, 1300, 2513
XbaI	TCTAGA	1 cut(s)	1222
XceI	RCATGY	3 cut(s)	1280, 2393, 2500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	1245
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	2 cut(s)	2305, 2435
XspI	CTAG	4 cut(s)	165, 794, 1223, 1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.