Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001164

Physical Location & Seq

Genomic Coordinates Reverse (-)

38547512 .. 38553610

Gene Structure 6099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCATGCCTCTTAATGATACAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAAACACCACAGATAGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGTCCAAGTTACGTCTTAGCTGTAACTGACAACGGAGTAGTCTACTCTTTTGGGTCAGGTTCTAATTTATGTCTCGGCCATGGAGAGCAGCATGATGAGTTCCAACCACGTGCAATCCAATCATTTAGAAGGAAGGGTATTCATGTAGTTCGAGTCTGTGCAGGTGACGAGCATGCAGTGTCACTTGATTCCAGTGGATTTGTATATACCTGGGGTAAAGGGTACTGTGGTGCAGGCCATGGGGATGAGATTGACAAGACTACCCCGGAACTCTTGAGCAGAGTTCAAAGCCAGCTGGCCGTGCAGGTGTGTGCAAGAAAACGGAAGACCTTTGTTCTAATGGATAATGGTTTAGTATATGGTTGTGGTTGGATGGGGTTTGGTAGCCTTGGGTTTACAGACAGGGGACTATCTGACAAAATCTTGAGCCCTCGCATCCTTGATAGCTTAAGACCTCATCATGTTTCTCAGATTAGCACTGGGCTGTACCATACTGTTGCTATCACTAACTCTGGACAACTCTTTGGATTCGGAGATAATGAAAGAGCACAACTTGGGCACGATACACTGAGAGCATGCCTCAAACCAACTGAAATTTTTATAGCAGATCGAAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp14

Protein Analysis

307

Amino Acids

33.39

Weight (kDa)

8.25

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	8 - 143	3e-31	RCC1-like domain
RCC1	PF00415	8 - 56	1.2e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	44 - 72	6.9e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	59 - 109	1.3e-13	Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD	PF25384	110 - 305	8.3e-09	Alsin RCC1-like domain
RCC1	PF00415	112 - 162	1.6e-11	Regulator of chromosome condensation (RCC1) repeat
WD40_RLD	PF25390	148 - 300	1.7e-28	RCC1-like domain
RCC1_2	PF13540	256 - 285	3.9e-08	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65730
fragaria_vesca	FvH4_1g25380 FvH4_4g36810
malus_domestica	MD13G1006700.v1.1 MD16G1001100.v1.1
prunus_persica	Prupe.1G346200_v2.0.a1 Prupe.1G346200_v2.0.a1
pyrus_communis	pycom13g00560 pycom16g00430
rosa_chinensis	RchiOBHm_Chr2g0123411 RchiOBHm_Chr4g0446541 RchiOBHm_Chr5g0030651 RchiOBHm_Chr5g0030671 RchiOBHm_Chr6g0294131
rosa_laevigata	RLG00000005650 RLG00000011896 RLG00000018750 RLG00000018751 RLG00000033236 RLG00000033243
rosa_multiflora	Rmu_co8173216.1_g000001 Rmu_sc0002840.1_g000001 Rmu_sc0003238.1_g000020 Rmu_sc0005037.1_g000008 Rmu_sc0005876.1_g000010 Rmu_sc0008328.1_g000001 Rmu_sc0022360.1_g000001 Rmu_ssc0000144.1_g000011 Rmu_ssc0000144.1_g000013
rosa_roxburghii	Rroxscaffold_1G00049650 Rroxscaffold_5G00386960 Rroxscaffold_7G00173620
rosa_rugosa	Rorug04G0372300 Rorug05G0119100 Rorug06G0241800
rosa_samantha	Rh2AG304200 Rh2BG312200 Rh2CG290700 Rh2DG328200 Rh4AG434000 Rh4BG443200 Rh4CG460500 Rh4DG441800 Rh5AG211400 Rh5AG211600 Rh5BG210500 Rh5CG234100 Rh5DG215400 Rh5DG215700 Rh6BG361000 Rh6CG368300 Rh6DG354900
rosa_wichuraiana	Rw2G024350 Rw4G037100 Rw5G019350 Rw5G019390 Rw6G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	455, 598
AasI	GACNNNNNNGTC	1 cut(s)	219
Acc36I	ACCTGC	3 cut(s)	124, 455, 598
AccI	GTMKAC	1 cut(s)	345
AcoI	YGGCCR	3 cut(s)	80, 379, 600
AcsI	RAATTY	3 cut(s)	120, 263, 897
AcvI	CACGTG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	527, 791
AflII	CTTAAG	1 cut(s)	751
AflIII	ACRYGT	2 cut(s)	32, 191
AgsI	TTSAA	2 cut(s)	263, 590
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	4 cut(s)	161, 323, 598, 750
AluI	AGCT	4 cut(s)	161, 323, 598, 750
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	1 cut(s)	380
AoxI	GGCC	7 cut(s)	80, 92, 178, 198, 379, 538, 600
ApeKI	GCWGC	2 cut(s)	299, 391
ApoI	RAATTY	3 cut(s)	120, 263, 897
AspA2I	CCTAGG	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	198, 305
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	305
AvrII	CCTAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	864
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BanII	GRGCYC	1 cut(s)	734
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	2 cut(s)	286, 403
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	751
BfuAI	ACCTGC	3 cut(s)	124, 455, 598
BisI	GCNGC	2 cut(s)	300, 392
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	301, 393
Bme1390I	CCNGG	2 cut(s)	514, 569
Bme18I	GGWCC	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	198, 305
BmiI	GGNNCC	2 cut(s)	199, 283
BmrFI	CCNGG	2 cut(s)	514, 569
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	1 cut(s)	747
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	635
BplI	GAGNNNNNCTC	2 cut(s)	867, 899
BpuEI	CTTGAG	3 cut(s)	254, 598, 748
BpuMI	CCSGG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	413
BsaJI	CCNNGG	6 cut(s)	95, 382, 513, 541, 567, 691
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	495, 787
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	6 cut(s)	95, 382, 513, 541, 567, 691
BseGI	GGATG	3 cut(s)	553, 681, 738
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	785, 863
BseNI	ACTGG	2 cut(s)	495, 787
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	2 cut(s)	286, 403
BsgI	GTGCAG	3 cut(s)	483, 555, 626
BshFI	GGCC	7 cut(s)	82, 94, 180, 200, 381, 540, 602
BsiHKAI	GWGCWC	1 cut(s)	853
BsiSI	CCGG	2 cut(s)	79, 569
BslFI	GGGAC	2 cut(s)	53, 723
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	53, 723
BsnI	GGCC	7 cut(s)	82, 94, 180, 200, 381, 540, 602
Bsp1286I	GDGCHC	3 cut(s)	734, 853, 864
Bsp143I	GATC	1 cut(s)	910
Bsp19I	CCATGG	2 cut(s)	382, 541
BspANI	GGCC	7 cut(s)	82, 94, 180, 200, 381, 540, 602
BspCNI	CTCAG	2 cut(s)	784, 864
BspLI	GGNNCC	2 cut(s)	199, 283
BspMI	ACCTGC	3 cut(s)	124, 455, 598
BspTI	CTTAAG	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	495, 787
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	6 cut(s)	95, 382, 513, 541, 567, 691
BssMI	GATC	1 cut(s)	910
BssT1I	CCWWGG	4 cut(s)	95, 382, 541, 691
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	530, 799
BstAFI	CTTAAG	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	6 cut(s)	131, 477, 538, 596, 600, 880
BstDEI	CTNAG	3 cut(s)	319, 771, 872
BstDSI	CCRYGG	2 cut(s)	382, 541
BstF5I	GGATG	3 cut(s)	553, 681, 738
BstKTI	GATC	1 cut(s)	913
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	4 cut(s)	36, 195, 479, 882
BstSCI	CCNGG	2 cut(s)	512, 567
BstSLI	GKGCMC	1 cut(s)	864
BstV1I	GCAGC	2 cut(s)	286, 403
BstV2I	GAAGAC	1 cut(s)	635
BsuRI	GGCC	7 cut(s)	82, 94, 180, 200, 381, 540, 602
BtgI	CCRYGG	2 cut(s)	382, 541
BtsCI	GGATG	3 cut(s)	553, 681, 738
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	4 cut(s)	486, 502, 780, 869
BveI	ACCTGC	3 cut(s)	124, 455, 598
Cac8I	GCNNGC	6 cut(s)	131, 477, 538, 596, 600, 880
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	198, 305
Csp6I	GTAC	2 cut(s)	526, 790
CviQI	GTAC	2 cut(s)	526, 790
DdeI	CTNAG	3 cut(s)	319, 771, 872
DpnI	GATC	1 cut(s)	912
DpnII	GATC	1 cut(s)	910
DrdI	GACNNNNNNGTC	1 cut(s)	219
DriI	GACNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	219
EaeI	YGGCCR	3 cut(s)	80, 379, 600
Eam1105I	GACNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	4 cut(s)	95, 382, 541, 691
Eco147I	AGGCCT	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	305
Eco72I	CACGTG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	4 cut(s)	95, 382, 541, 691
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	4 cut(s)	95, 382, 541, 691
FaqI	GGGAC	2 cut(s)	53, 723
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	300, 392
FokI	GGATG	3 cut(s)	560, 688, 725
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	2 cut(s)	300, 392
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	300, 392
HaeIII	GGCC	7 cut(s)	82, 94, 180, 200, 381, 540, 602
HapII	CCGG	2 cut(s)	79, 569
HinfI	GANTC	3 cut(s)	456, 491, 831
HpaII	CCGG	2 cut(s)	79, 569
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	346, 699
Hpy188I	TCNGA	4 cut(s)	294, 718, 774, 836
Hpy188III	TCNNGA	3 cut(s)	577, 727, 816
Hpy8I	GTNNAC	2 cut(s)	346, 699
HpyAV	CCTTC	3 cut(s)	109, 426, 430
HpyCH4III	ACNGT	2 cut(s)	530, 799
HpyCH4IV	ACGT	2 cut(s)	315, 412
HpyCH4V	TGCA	8 cut(s)	129, 143, 416, 464, 479, 536, 607, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	3 cut(s)	319, 771, 872
HpySE526I	ACGT	2 cut(s)	315, 412
Kzo9I	GATC	1 cut(s)	910
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	2 cut(s)	286, 403
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	2 cut(s)	315, 412
MaeIII	GTNAC	4 cut(s)	311, 325, 467, 483
MalI	GATC	1 cut(s)	912
MboI	GATC	1 cut(s)	910
MboII	GAAGA	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	734, 853, 864
MluCI	AATT	9 cut(s)	43, 120, 151, 255, 263, 276, 288, 367, 897
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	430, 653
MnlI	CCTC	5 cut(s)	20, 100, 744, 768, 893
MseI	TTAA	3 cut(s)	14, 150, 752
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	598
MspCI	CTTAAG	1 cut(s)	751
MspI	CCGG	2 cut(s)	79, 569
MspR9I	CCNGG	2 cut(s)	514, 569
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	604
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	2 cut(s)	382, 541
NdeII	GATC	1 cut(s)	910
NlaIV	GGNNCC	2 cut(s)	199, 283
NmeAIII	GCCGAG	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	467, 483
NspI	RCATGY	4 cut(s)	36, 195, 479, 882
PaeI	GCATGC	2 cut(s)	479, 882
PaqCI	CACCTGC	2 cut(s)	455, 598
PceI	AGGCCT	1 cut(s)	94
PciI	ACATGT	2 cut(s)	32, 191
PfeI	GAWTC	2 cut(s)	491, 831
PkrI	GCNGC	2 cut(s)	301, 393
PleI	GAGTC	1 cut(s)	464
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	413
PscI	ACATGT	2 cut(s)	32, 191
Psp6I	CCWGG	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	199, 283
PspPI	GGNCC	2 cut(s)	198, 305
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	527, 791
RsaNI	GTAC	2 cut(s)	526, 790
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	14, 150, 752
SatI	GCNGC	2 cut(s)	300, 392
Sau3AI	GATC	1 cut(s)	910
Sau96I	GGNCC	2 cut(s)	198, 305
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	2 cut(s)	514, 569
SduI	GDGCHC	3 cut(s)	734, 853, 864
SfaNI	GCATC	1 cut(s)	747
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	4 cut(s)	269, 577, 727, 751
SmoI	CTYRAG	4 cut(s)	269, 577, 727, 751
SphI	GCATGC	2 cut(s)	479, 882
Sse9I	AATT	9 cut(s)	43, 120, 151, 255, 263, 276, 288, 367, 897
SseBI	AGGCCT	1 cut(s)	94
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	512, 567
StyI	CCWWGG	4 cut(s)	95, 382, 541, 691
TaaI	ACNGT	2 cut(s)	530, 799
TaiI	ACGT	2 cut(s)	318, 415
TaqI	TCGA	2 cut(s)	454, 913
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	9 cut(s)	43, 120, 151, 255, 263, 276, 288, 367, 897
TfiI	GAWTC	2 cut(s)	491, 831
Tru1I	TTAA	3 cut(s)	14, 150, 752
Tru9I	TTAA	3 cut(s)	14, 150, 752
TscAI	CASTG	4 cut(s)	486, 502, 787, 876
TseFI	GTSAC	2 cut(s)	467, 483
TseI	GCWGC	2 cut(s)	299, 391
Tsp45I	GTSAC	2 cut(s)	467, 483
TspDTI	ATGAA	3 cut(s)	128, 434, 858
TspGWI	ACGGA	2 cut(s)	351, 640
TspRI	CASTG	4 cut(s)	486, 502, 787, 876
Vha464I	CTTAAG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	3 cut(s)	120, 263, 897
XceI	RCATGY	4 cut(s)	36, 195, 479, 882
XmaJI	CCTAGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.